data_5XIO # _model_server_result.job_id FG_-96xfAio1aM6FjDjjIg _model_server_result.datetime_utc '2024-11-24 17:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":802}' # _entry.id 5XIO # _exptl.entry_id 5XIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.681 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XIO _cell.length_a 82.768 _cell.length_b 112.635 _cell.length_c 140.494 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 431 A CYS 652 1_555 D ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A SG CYS 436 A CYS 657 1_555 D ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 A SG CYS 481 A CYS 702 1_555 D ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 B SG CYS 431 B CYS 652 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc5 B SG CYS 436 B CYS 657 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 B SG CYS 481 B CYS 702 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'C16 H17 Br Cl N3 O3' _chem_comp.formula_weight 414.681 _chem_comp.id HFG _chem_comp.mon_nstd_flag . _chem_comp.name 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Halofuginone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C6 HFG sing 179 n n C6 C5 HFG doub 180 n y C6 C7 HFG sing 181 n y BR1 C7 HFG sing 182 n n C5 C10 HFG sing 183 n y C7 C8 HFG doub 184 n y O11 C4 HFG doub 185 n n C10 C4 HFG sing 186 n n C10 C9 HFG doub 187 n y C8 C9 HFG sing 188 n y C4 N3 HFG sing 189 n n C9 N1 HFG sing 190 n n N1' C6' HFG sing 191 n n N1' C2' HFG sing 192 n n C6' C5' HFG sing 193 n n O4' C21 HFG doub 194 n n N3 C1' HFG sing 195 n n N3 C2 HFG sing 196 n n N1 C2 HFG doub 197 n n C21 C3' HFG sing 198 n n C21 C1' HFG sing 199 n n C3' C2' HFG sing 200 n n C2' C39 HFG sing 201 n n C5' C4' HFG sing 202 n n C39 C4' HFG sing 203 n n C39 O7' HFG sing 204 n n C3' H1 HFG sing 205 n n C3' H2 HFG sing 206 n n C2' H3 HFG sing 207 n n N1' H4 HFG sing 208 n n C6' H6 HFG sing 209 n n C6' H7 HFG sing 210 n n C5' H8 HFG sing 211 n n C5' H9 HFG sing 212 n n C4' H10 HFG sing 213 n n C4' H11 HFG sing 214 n n C39 H12 HFG sing 215 n n O7' H13 HFG sing 216 n n C1' H14 HFG sing 217 n n C1' H15 HFG sing 218 n n C5 H16 HFG sing 219 n n C2 H17 HFG sing 220 n n C8 H18 HFG sing 221 n n # _atom_sites.entry_id 5XIO _atom_sites.fract_transf_matrix[1][1] 0.012082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007118 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HFG A 1 801 905 HFG HFG . D 3 ZN A 1 802 951 ZN ZN . E 4 ANP A 1 803 1001 ANP ANP . F 3 ZN B 1 801 951 ZN ZN . G 2 HFG B 1 802 905 HFG HFG . H 4 ANP B 1 803 1001 ANP ANP . I 5 HOH A 1 901 144 HOH HOH . I 5 HOH A 2 902 79 HOH HOH . I 5 HOH A 3 903 22 HOH HOH . I 5 HOH A 4 904 18 HOH HOH . I 5 HOH A 5 905 159 HOH HOH . I 5 HOH A 6 906 77 HOH HOH . I 5 HOH A 7 907 11 HOH HOH . I 5 HOH A 8 908 12 HOH HOH . I 5 HOH A 9 909 109 HOH HOH . I 5 HOH A 10 910 83 HOH HOH . I 5 HOH A 11 911 45 HOH HOH . I 5 HOH A 12 912 141 HOH HOH . I 5 HOH A 13 913 180 HOH HOH . I 5 HOH A 14 914 3 HOH HOH . I 5 HOH A 15 915 19 HOH HOH . I 5 HOH A 16 916 2 HOH HOH . I 5 HOH A 17 917 161 HOH HOH . I 5 HOH A 18 918 107 HOH HOH . I 5 HOH A 19 919 93 HOH HOH . I 5 HOH A 20 920 134 HOH HOH . I 5 HOH A 21 921 51 HOH HOH . I 5 HOH A 22 922 168 HOH HOH . I 5 HOH A 23 923 1 HOH HOH . I 5 HOH A 24 924 92 HOH HOH . I 5 HOH A 25 925 40 HOH HOH . I 5 HOH A 26 926 88 HOH HOH . I 5 HOH A 27 927 54 HOH HOH . I 5 HOH A 28 928 4 HOH HOH . I 5 HOH A 29 929 5 HOH HOH . I 5 HOH A 30 930 34 HOH HOH . I 5 HOH A 31 931 65 HOH HOH . I 5 HOH A 32 932 48 HOH HOH . I 5 HOH A 33 933 82 HOH HOH . I 5 HOH A 34 934 113 HOH HOH . I 5 HOH A 35 935 87 HOH HOH . I 5 HOH A 36 936 70 HOH HOH . I 5 HOH A 37 937 164 HOH HOH . I 5 HOH A 38 938 163 HOH HOH . I 5 HOH A 39 939 154 HOH HOH . I 5 HOH A 40 940 61 HOH HOH . I 5 HOH A 41 941 80 HOH HOH . I 5 HOH A 42 942 112 HOH HOH . I 5 HOH A 43 943 43 HOH HOH . I 5 HOH A 44 944 115 HOH HOH . I 5 HOH A 45 945 86 HOH HOH . I 5 HOH A 46 946 162 HOH HOH . I 5 HOH A 47 947 49 HOH HOH . I 5 HOH A 48 948 114 HOH HOH . I 5 HOH A 49 949 94 HOH HOH . I 5 HOH A 50 950 91 HOH HOH . I 5 HOH A 51 951 135 HOH HOH . I 5 HOH A 52 952 15 HOH HOH . I 5 HOH A 53 953 66 HOH HOH . I 5 HOH A 54 954 187 HOH HOH . I 5 HOH A 55 955 150 HOH HOH . I 5 HOH A 56 956 44 HOH HOH . I 5 HOH A 57 957 33 HOH HOH . I 5 HOH A 58 958 123 HOH HOH . I 5 HOH A 59 959 151 HOH HOH . I 5 HOH A 60 960 181 HOH HOH . I 5 HOH A 61 961 153 HOH HOH . I 5 HOH A 62 962 171 HOH HOH . I 5 HOH A 63 963 38 HOH HOH . I 5 HOH A 64 964 172 HOH HOH . I 5 HOH A 65 965 132 HOH HOH . I 5 HOH A 66 966 41 HOH HOH . I 5 HOH A 67 967 14 HOH HOH . I 5 HOH A 68 968 146 HOH HOH . I 5 HOH A 69 969 17 HOH HOH . I 5 HOH A 70 970 131 HOH HOH . I 5 HOH A 71 971 62 HOH HOH . I 5 HOH A 72 972 57 HOH HOH . I 5 HOH A 73 973 98 HOH HOH . I 5 HOH A 74 974 193 HOH HOH . I 5 HOH A 75 975 76 HOH HOH . I 5 HOH A 76 976 90 HOH HOH . I 5 HOH A 77 977 56 HOH HOH . I 5 HOH A 78 978 157 HOH HOH . I 5 HOH A 79 979 97 HOH HOH . I 5 HOH A 80 980 188 HOH HOH . I 5 HOH A 81 981 13 HOH HOH . I 5 HOH A 82 982 167 HOH HOH . I 5 HOH A 83 983 108 HOH HOH . I 5 HOH A 84 984 136 HOH HOH . I 5 HOH A 85 985 170 HOH HOH . I 5 HOH A 86 986 189 HOH HOH . I 5 HOH A 87 987 138 HOH HOH . I 5 HOH A 88 988 176 HOH HOH . I 5 HOH A 89 989 196 HOH HOH . I 5 HOH A 90 990 143 HOH HOH . I 5 HOH A 91 991 111 HOH HOH . I 5 HOH A 92 992 178 HOH HOH . I 5 HOH A 93 993 166 HOH HOH . I 5 HOH A 94 994 191 HOH HOH . I 5 HOH A 95 995 175 HOH HOH . I 5 HOH A 96 996 152 HOH HOH . J 5 HOH B 1 901 7 HOH HOH . J 5 HOH B 2 902 39 HOH HOH . J 5 HOH B 3 903 74 HOH HOH . J 5 HOH B 4 904 23 HOH HOH . J 5 HOH B 5 905 117 HOH HOH . J 5 HOH B 6 906 46 HOH HOH . J 5 HOH B 7 907 158 HOH HOH . J 5 HOH B 8 908 21 HOH HOH . J 5 HOH B 9 909 121 HOH HOH . J 5 HOH B 10 910 185 HOH HOH . J 5 HOH B 11 911 8 HOH HOH . J 5 HOH B 12 912 73 HOH HOH . J 5 HOH B 13 913 160 HOH HOH . J 5 HOH B 14 914 139 HOH HOH . J 5 HOH B 15 915 24 HOH HOH . J 5 HOH B 16 916 99 HOH HOH . J 5 HOH B 17 917 169 HOH HOH . J 5 HOH B 18 918 32 HOH HOH . J 5 HOH B 19 919 129 HOH HOH . J 5 HOH B 20 920 71 HOH HOH . J 5 HOH B 21 921 100 HOH HOH . J 5 HOH B 22 922 85 HOH HOH . J 5 HOH B 23 923 50 HOH HOH . J 5 HOH B 24 924 69 HOH HOH . J 5 HOH B 25 925 27 HOH HOH . J 5 HOH B 26 926 130 HOH HOH . J 5 HOH B 27 927 9 HOH HOH . J 5 HOH B 28 928 182 HOH HOH . J 5 HOH B 29 929 6 HOH HOH . J 5 HOH B 30 930 155 HOH HOH . J 5 HOH B 31 931 186 HOH HOH . J 5 HOH B 32 932 103 HOH HOH . J 5 HOH B 33 933 106 HOH HOH . J 5 HOH B 34 934 47 HOH HOH . J 5 HOH B 35 935 36 HOH HOH . J 5 HOH B 36 936 25 HOH HOH . J 5 HOH B 37 937 68 HOH HOH . J 5 HOH B 38 938 58 HOH HOH . J 5 HOH B 39 939 63 HOH HOH . J 5 HOH B 40 940 127 HOH HOH . J 5 HOH B 41 941 59 HOH HOH . J 5 HOH B 42 942 78 HOH HOH . J 5 HOH B 43 943 72 HOH HOH . J 5 HOH B 44 944 53 HOH HOH . J 5 HOH B 45 945 119 HOH HOH . J 5 HOH B 46 946 64 HOH HOH . J 5 HOH B 47 947 10 HOH HOH . J 5 HOH B 48 948 125 HOH HOH . J 5 HOH B 49 949 124 HOH HOH . J 5 HOH B 50 950 67 HOH HOH . J 5 HOH B 51 951 142 HOH HOH . J 5 HOH B 52 952 104 HOH HOH . J 5 HOH B 53 953 30 HOH HOH . J 5 HOH B 54 954 60 HOH HOH . J 5 HOH B 55 955 137 HOH HOH . J 5 HOH B 56 956 128 HOH HOH . J 5 HOH B 57 957 28 HOH HOH . J 5 HOH B 58 958 133 HOH HOH . J 5 HOH B 59 959 16 HOH HOH . J 5 HOH B 60 960 26 HOH HOH . J 5 HOH B 61 961 149 HOH HOH . J 5 HOH B 62 962 75 HOH HOH . J 5 HOH B 63 963 110 HOH HOH . J 5 HOH B 64 964 177 HOH HOH . J 5 HOH B 65 965 29 HOH HOH . J 5 HOH B 66 966 20 HOH HOH . J 5 HOH B 67 967 52 HOH HOH . J 5 HOH B 68 968 120 HOH HOH . J 5 HOH B 69 969 118 HOH HOH . J 5 HOH B 70 970 190 HOH HOH . J 5 HOH B 71 971 116 HOH HOH . J 5 HOH B 72 972 156 HOH HOH . J 5 HOH B 73 973 84 HOH HOH . J 5 HOH B 74 974 81 HOH HOH . J 5 HOH B 75 975 35 HOH HOH . J 5 HOH B 76 976 122 HOH HOH . J 5 HOH B 77 977 95 HOH HOH . J 5 HOH B 78 978 148 HOH HOH . J 5 HOH B 79 979 96 HOH HOH . J 5 HOH B 80 980 31 HOH HOH . J 5 HOH B 81 981 37 HOH HOH . J 5 HOH B 82 982 55 HOH HOH . J 5 HOH B 83 983 145 HOH HOH . J 5 HOH B 84 984 42 HOH HOH . J 5 HOH B 85 985 102 HOH HOH . J 5 HOH B 86 986 165 HOH HOH . J 5 HOH B 87 987 192 HOH HOH . J 5 HOH B 88 988 195 HOH HOH . J 5 HOH B 89 989 198 HOH HOH . J 5 HOH B 90 990 174 HOH HOH . J 5 HOH B 91 991 101 HOH HOH . J 5 HOH B 92 992 140 HOH HOH . J 5 HOH B 93 993 89 HOH HOH . J 5 HOH B 94 994 183 HOH HOH . J 5 HOH B 95 995 126 HOH HOH . J 5 HOH B 96 996 184 HOH HOH . J 5 HOH B 97 997 194 HOH HOH . J 5 HOH B 98 998 179 HOH HOH . J 5 HOH B 99 999 173 HOH HOH . J 5 HOH B 100 1000 197 HOH HOH . J 5 HOH B 101 1001 105 HOH HOH . J 5 HOH B 102 1002 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4' HFG . . . G 2 -27.555 4.145 -40.832 1 25.13 ? O4' HFG 802 B 1 HETATM 2 C C21 HFG . . . G 2 -27.668 3.082 -41.39 1 26.22 ? C21 HFG 802 B 1 HETATM 3 C C3' HFG . . . G 2 -26.676 2.598 -42.437 1 25.67 ? C3' HFG 802 B 1 HETATM 4 C C2' HFG . . . G 2 -25.409 3.45 -42.454 1 26.72 ? C2' HFG 802 B 1 HETATM 5 N N1' HFG . . . G 2 -25.656 4.844 -42.793 1 25.43 ? N1' HFG 802 B 1 HETATM 6 C C6' HFG . . . G 2 -24.39 5.547 -43.002 1 24.68 ? C6' HFG 802 B 1 HETATM 7 C C5' HFG . . . G 2 -23.46 5.432 -41.797 1 28.07 ? C5' HFG 802 B 1 HETATM 8 C C4' HFG . . . G 2 -23.295 3.982 -41.366 1 24.81 ? C4' HFG 802 B 1 HETATM 9 C C39 HFG . . . G 2 -24.657 3.369 -41.155 1 24.94 ? C39 HFG 802 B 1 HETATM 10 O O7' HFG . . . G 2 -24.518 2.021 -40.752 1 21.26 ? O7' HFG 802 B 1 HETATM 11 C C1' HFG . . . G 2 -28.821 2.121 -41.098 1 25.89 ? C1' HFG 802 B 1 HETATM 12 N N3 HFG . . . G 2 -29.89 2.812 -40.374 1 28.92 ? N3 HFG 802 B 1 HETATM 13 C C4 HFG . . . G 2 -30.845 3.489 -41.105 1 27.58 ? C4 HFG 802 B 1 HETATM 14 O O11 HFG . . . G 2 -30.799 3.567 -42.291 1 33.99 ? O11 HFG 802 B 1 HETATM 15 C C10 HFG . . . G 2 -31.869 4.148 -40.304 1 29.62 ? C10 HFG 802 B 1 HETATM 16 C C5 HFG . . . G 2 -32.872 4.875 -40.917 1 32.98 ? C5 HFG 802 B 1 HETATM 17 C C2 HFG . . . G 2 -29.966 2.744 -39.036 1 30.12 ? C2 HFG 802 B 1 HETATM 18 N N1 HFG . . . G 2 -30.851 3.295 -38.298 1 29.8 ? N1 HFG 802 B 1 HETATM 19 C C9 HFG . . . G 2 -31.844 4.032 -38.928 1 32.24 ? C9 HFG 802 B 1 HETATM 20 C C8 HFG . . . G 2 -32.819 4.653 -38.164 1 34.27 ? C8 HFG 802 B 1 HETATM 21 C C7 HFG . . . G 2 -33.83 5.394 -38.758 1 40.57 ? C7 HFG 802 B 1 HETATM 22 BR BR1 HFG . . . G 2 -35.103 6.227 -37.627 1 91.78 ? BR1 HFG 802 B 1 HETATM 23 C C6 HFG . . . G 2 -33.85 5.504 -40.157 1 41.64 ? C6 HFG 802 B 1 HETATM 24 CL CL1 HFG . . . G 2 -35.06 6.382 -40.978 1 49.5 ? CL1 HFG 802 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #