data_5XIP
#
_model_server_result.job_id            nhuLoYhLcodL3Rnl6vH7GQ 
_model_server_result.datetime_utc      '2024-11-24 08:51:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xip 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1001}' 
#
_entry.id    5XIP 
#
_exptl.entry_id    5XIP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5XIP 
_cell.length_a            138.757 
_cell.length_b            138.757 
_cell.length_c            425.671 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XIP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,Q,R 1 1 
C,D,K,L,M,N,O,P,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 K N N 
? 2 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E O3G ANP . A ANP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc2 E O1B ANP . A ANP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc3 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc4 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc5 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
metalc ? metalc6 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? 
metalc ? metalc7 H O1G ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc8 H O2G ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc9 H O2B ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? 
metalc ? metalc10 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc11 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
metalc ? metalc12 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc13 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
metalc ? metalc14 K O1G ANP . C ANP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? 
metalc ? metalc15 K O1B ANP . C ANP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? 
metalc ? metalc16 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
metalc ? metalc17 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? 
metalc ? metalc18 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
metalc ? metalc19 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc20 N O2G ANP . D ANP 1001 1_555 O MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? 
metalc ? metalc21 N O2B ANP . D ANP 1001 1_555 O MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc22 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc23 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc24 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc25 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     5XIP 
_atom_sites.fract_transf_matrix[1][1]    0.007207 
_atom_sites.fract_transf_matrix[1][2]    0.004161 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008322 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ANP A 1 1001 1001 ANP ANP . 
F 3 MG A 1 1002 1051 MG MG . 
G 4 HFG A 1 1003 1101 HFG HFG . 
H 2 ANP B 1 1001 1001 ANP ANP . 
I 3 MG B 1 1002 1051 MG MG . 
J 4 HFG B 1 1003 1101 HFG HFG . 
K 2 ANP C 1 1001 1001 ANP ANP . 
L 3 MG C 1 1002 1051 MG MG . 
M 4 HFG C 1 1003 1101 HFG HFG . 
N 2 ANP D 1 1001 1001 ANP ANP . 
O 3 MG D 1 1002 1051 MG MG . 
P 4 HFG D 1 1003 1101 HFG HFG . 
Q 5 HOH A 1 1101 3 HOH HOH . 
Q 5 HOH A 2 1102 1 HOH HOH . 
Q 5 HOH A 3 1103 2 HOH HOH . 
Q 5 HOH A 4 1104 4 HOH HOH . 
R 5 HOH B 1 1101 5 HOH HOH . 
R 5 HOH B 2 1102 7 HOH HOH . 
R 5 HOH B 3 1103 8 HOH HOH . 
R 5 HOH B 4 1104 6 HOH HOH . 
S 5 HOH C 1 1101 10 HOH HOH . 
S 5 HOH C 2 1102 12 HOH HOH . 
S 5 HOH C 3 1103 11 HOH HOH . 
S 5 HOH C 4 1104 9 HOH HOH . 
T 5 HOH D 1 1101 14 HOH HOH . 
T 5 HOH D 2 1102 13 HOH HOH . 
T 5 HOH D 3 1103 16 HOH HOH . 
T 5 HOH D 4 1104 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . K 2 -77.753 165.547 -32.699 1 43.77 ? PG ANP 1001 C 1 
HETATM 2 O O1G ANP . . . K 2 -77.594 166.552 -33.869 1 38.08 ? O1G ANP 1001 C 1 
HETATM 3 O O2G ANP . . . K 2 -76.915 166.109 -31.53 1 43.16 ? O2G ANP 1001 C 1 
HETATM 4 O O3G ANP . . . K 2 -77.345 164.207 -33.05 1 45.13 ? O3G ANP 1001 C 1 
HETATM 5 P PB ANP . . . K 2 -80.625 166.442 -33.018 1 44.33 ? PB ANP 1001 C 1 
HETATM 6 O O1B ANP . . . K 2 -80.138 167.179 -34.261 1 39.45 ? O1B ANP 1001 C 1 
HETATM 7 O O2B ANP . . . K 2 -81.33 167.294 -32.144 1 44.49 ? O2B ANP 1001 C 1 
HETATM 8 N N3B ANP . . . K 2 -79.42 165.505 -32.274 1 43.41 ? N3B ANP 1001 C 1 
HETATM 9 P PA ANP . . . K 2 -83.246 165.347 -33.854 1 41.12 ? PA ANP 1001 C 1 
HETATM 10 O O1A ANP . . . K 2 -83.581 166.673 -34.377 1 40.24 ? O1A ANP 1001 C 1 
HETATM 11 O O2A ANP . . . K 2 -84 164.768 -32.74 1 34.96 ? O2A ANP 1001 C 1 
HETATM 12 O O3A ANP . . . K 2 -81.686 165.327 -33.495 1 43.14 ? O3A ANP 1001 C 1 
HETATM 13 O O5' ANP . . . K 2 -83.281 164.341 -35.083 1 43.97 ? O5' ANP 1001 C 1 
HETATM 14 C C5' ANP . . . K 2 -84.1 163.186 -35.067 1 43.6 ? C5' ANP 1001 C 1 
HETATM 15 C C4' ANP . . . K 2 -83.228 161.939 -35.242 1 41 ? C4' ANP 1001 C 1 
HETATM 16 O O4' ANP . . . K 2 -82.6 161.952 -36.51 1 39.26 ? O4' ANP 1001 C 1 
HETATM 17 C C3' ANP . . . K 2 -82.134 161.939 -34.187 1 39.55 ? C3' ANP 1001 C 1 
HETATM 18 O O3' ANP . . . K 2 -82.56 161.209 -33.031 1 39.17 ? O3' ANP 1001 C 1 
HETATM 19 C C2' ANP . . . K 2 -80.996 161.253 -34.878 1 39.35 ? C2' ANP 1001 C 1 
HETATM 20 O O2' ANP . . . K 2 -81.019 159.843 -34.715 1 38.26 ? O2' ANP 1001 C 1 
HETATM 21 C C1' ANP . . . K 2 -81.24 161.552 -36.344 1 40.76 ? C1' ANP 1001 C 1 
HETATM 22 N N9 ANP . . . K 2 -80.437 162.646 -36.877 1 43.97 ? N9 ANP 1001 C 1 
HETATM 23 C C8 ANP . . . K 2 -80.111 163.825 -36.286 1 44.14 ? C8 ANP 1001 C 1 
HETATM 24 N N7 ANP . . . K 2 -79.395 164.646 -37.053 1 44.89 ? N7 ANP 1001 C 1 
HETATM 25 C C5 ANP . . . K 2 -79.266 163.977 -38.256 1 47 ? C5 ANP 1001 C 1 
HETATM 26 C C6 ANP . . . K 2 -78.642 164.191 -39.522 1 47.93 ? C6 ANP 1001 C 1 
HETATM 27 N N6 ANP . . . K 2 -77.986 165.297 -39.817 1 47.18 ? N6 ANP 1001 C 1 
HETATM 28 N N1 ANP . . . K 2 -78.691 163.273 -40.517 1 49.81 ? N1 ANP 1001 C 1 
HETATM 29 C C2 ANP . . . K 2 -79.347 162.157 -40.243 1 50.61 ? C2 ANP 1001 C 1 
HETATM 30 N N3 ANP . . . K 2 -79.966 161.825 -39.115 1 50.71 ? N3 ANP 1001 C 1 
HETATM 31 C C4 ANP . . . K 2 -79.903 162.74 -38.136 1 47.29 ? C4 ANP 1001 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#