data_5XIP # _model_server_result.job_id BO6RPi1yAw2MDZBONkxWWw _model_server_result.datetime_utc '2024-11-24 08:36:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 5XIP # _exptl.entry_id 5XIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XIP _cell.length_a 138.757 _cell.length_b 138.757 _cell.length_c 425.671 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,D,K,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O3G ANP . A ANP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 E O1B ANP . A ANP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc5 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc6 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc7 H O1G ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 H O2G ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc9 H O2B ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc10 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc11 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc12 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc13 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc14 K O1G ANP . C ANP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc15 K O1B ANP . C ANP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc16 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc17 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? metalc ? metalc18 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc19 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc20 N O2G ANP . D ANP 1001 1_555 O MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc21 N O2B ANP . D ANP 1001 1_555 O MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc22 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc23 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc24 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc25 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XIP _atom_sites.fract_transf_matrix[1][1] 0.007207 _atom_sites.fract_transf_matrix[1][2] 0.004161 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ANP A 1 1001 1001 ANP ANP . F 3 MG A 1 1002 1051 MG MG . G 4 HFG A 1 1003 1101 HFG HFG . H 2 ANP B 1 1001 1001 ANP ANP . I 3 MG B 1 1002 1051 MG MG . J 4 HFG B 1 1003 1101 HFG HFG . K 2 ANP C 1 1001 1001 ANP ANP . L 3 MG C 1 1002 1051 MG MG . M 4 HFG C 1 1003 1101 HFG HFG . N 2 ANP D 1 1001 1001 ANP ANP . O 3 MG D 1 1002 1051 MG MG . P 4 HFG D 1 1003 1101 HFG HFG . Q 5 HOH A 1 1101 3 HOH HOH . Q 5 HOH A 2 1102 1 HOH HOH . Q 5 HOH A 3 1103 2 HOH HOH . Q 5 HOH A 4 1104 4 HOH HOH . R 5 HOH B 1 1101 5 HOH HOH . R 5 HOH B 2 1102 7 HOH HOH . R 5 HOH B 3 1103 8 HOH HOH . R 5 HOH B 4 1104 6 HOH HOH . S 5 HOH C 1 1101 10 HOH HOH . S 5 HOH C 2 1102 12 HOH HOH . S 5 HOH C 3 1103 11 HOH HOH . S 5 HOH C 4 1104 9 HOH HOH . T 5 HOH D 1 1101 14 HOH HOH . T 5 HOH D 2 1102 13 HOH HOH . T 5 HOH D 3 1103 16 HOH HOH . T 5 HOH D 4 1104 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x -32.777 _atom_site.Cartn_y 169.814 _atom_site.Cartn_z 5.727 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #