data_5XIP # _model_server_result.job_id IP0H7GTwlXITta8WhIyGjg _model_server_result.datetime_utc '2024-11-24 09:06:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1003}' # _entry.id 5XIP # _exptl.entry_id 5XIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.681 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XIP _cell.length_a 138.757 _cell.length_b 138.757 _cell.length_c 425.671 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,D,K,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O3G ANP . A ANP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc2 E O1B ANP . A ANP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc5 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? metalc ? metalc6 F MG MG . A MG 1002 1_555 Q O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc7 H O1G ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc8 H O2G ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc9 H O2B ANP . B ANP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc10 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc11 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc12 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc13 I MG MG . B MG 1002 1_555 R O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc14 K O1G ANP . C ANP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc15 K O1B ANP . C ANP 1001 1_555 L MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? metalc ? metalc16 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc17 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? metalc ? metalc18 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc19 L MG MG . C MG 1002 1_555 S O HOH . C HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc20 N O2G ANP . D ANP 1001 1_555 O MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc21 N O2B ANP . D ANP 1001 1_555 O MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc22 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc23 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc24 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc25 O MG MG . D MG 1002 1_555 T O HOH . D HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? # _chem_comp.formula 'C16 H17 Br Cl N3 O3' _chem_comp.formula_weight 414.681 _chem_comp.id HFG _chem_comp.mon_nstd_flag . _chem_comp.name 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Halofuginone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C6 HFG sing 179 n n C6 C5 HFG doub 180 n y C6 C7 HFG sing 181 n y BR1 C7 HFG sing 182 n n C5 C10 HFG sing 183 n y C7 C8 HFG doub 184 n y O11 C4 HFG doub 185 n n C10 C4 HFG sing 186 n n C10 C9 HFG doub 187 n y C8 C9 HFG sing 188 n y C4 N3 HFG sing 189 n n C9 N1 HFG sing 190 n n N1' C6' HFG sing 191 n n N1' C2' HFG sing 192 n n C6' C5' HFG sing 193 n n O4' C21 HFG doub 194 n n N3 C1' HFG sing 195 n n N3 C2 HFG sing 196 n n N1 C2 HFG doub 197 n n C21 C3' HFG sing 198 n n C21 C1' HFG sing 199 n n C3' C2' HFG sing 200 n n C2' C39 HFG sing 201 n n C5' C4' HFG sing 202 n n C39 C4' HFG sing 203 n n C39 O7' HFG sing 204 n n C3' H1 HFG sing 205 n n C3' H2 HFG sing 206 n n C2' H3 HFG sing 207 n n N1' H4 HFG sing 208 n n C6' H6 HFG sing 209 n n C6' H7 HFG sing 210 n n C5' H8 HFG sing 211 n n C5' H9 HFG sing 212 n n C4' H10 HFG sing 213 n n C4' H11 HFG sing 214 n n C39 H12 HFG sing 215 n n O7' H13 HFG sing 216 n n C1' H14 HFG sing 217 n n C1' H15 HFG sing 218 n n C5 H16 HFG sing 219 n n C2 H17 HFG sing 220 n n C8 H18 HFG sing 221 n n # _atom_sites.entry_id 5XIP _atom_sites.fract_transf_matrix[1][1] 0.007207 _atom_sites.fract_transf_matrix[1][2] 0.004161 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ANP A 1 1001 1001 ANP ANP . F 3 MG A 1 1002 1051 MG MG . G 4 HFG A 1 1003 1101 HFG HFG . H 2 ANP B 1 1001 1001 ANP ANP . I 3 MG B 1 1002 1051 MG MG . J 4 HFG B 1 1003 1101 HFG HFG . K 2 ANP C 1 1001 1001 ANP ANP . L 3 MG C 1 1002 1051 MG MG . M 4 HFG C 1 1003 1101 HFG HFG . N 2 ANP D 1 1001 1001 ANP ANP . O 3 MG D 1 1002 1051 MG MG . P 4 HFG D 1 1003 1101 HFG HFG . Q 5 HOH A 1 1101 3 HOH HOH . Q 5 HOH A 2 1102 1 HOH HOH . Q 5 HOH A 3 1103 2 HOH HOH . Q 5 HOH A 4 1104 4 HOH HOH . R 5 HOH B 1 1101 5 HOH HOH . R 5 HOH B 2 1102 7 HOH HOH . R 5 HOH B 3 1103 8 HOH HOH . R 5 HOH B 4 1104 6 HOH HOH . S 5 HOH C 1 1101 10 HOH HOH . S 5 HOH C 2 1102 12 HOH HOH . S 5 HOH C 3 1103 11 HOH HOH . S 5 HOH C 4 1104 9 HOH HOH . T 5 HOH D 1 1101 14 HOH HOH . T 5 HOH D 2 1102 13 HOH HOH . T 5 HOH D 3 1103 16 HOH HOH . T 5 HOH D 4 1104 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4' HFG . . . P 4 -88.453 170.322 -66.222 1 55.06 ? O4' HFG 1003 D 1 HETATM 2 C C21 HFG . . . P 4 -88.791 170.476 -67.376 1 54.51 ? C21 HFG 1003 D 1 HETATM 3 C C3' HFG . . . P 4 -89.482 169.36 -68.154 1 55.5 ? C3' HFG 1003 D 1 HETATM 4 C C2' HFG . . . P 4 -89.13 167.98 -67.563 1 54.7 ? C2' HFG 1003 D 1 HETATM 5 N N1' HFG . . . P 4 -88.254 168.076 -66.39 1 54.46 ? N1' HFG 1003 D 1 HETATM 6 C C6' HFG . . . P 4 -87.935 166.759 -65.859 1 53.07 ? C6' HFG 1003 D 1 HETATM 7 C C5' HFG . . . P 4 -89.193 166.059 -65.422 1 51.7 ? C5' HFG 1003 D 1 HETATM 8 C C4' HFG . . . P 4 -90.11 165.895 -66.611 1 50.4 ? C4' HFG 1003 D 1 HETATM 9 C C39 HFG . . . P 4 -90.408 167.239 -67.231 1 52.44 ? C39 HFG 1003 D 1 HETATM 10 O O7' HFG . . . P 4 -91.148 167.039 -68.432 1 47.72 ? O7' HFG 1003 D 1 HETATM 11 C C1' HFG . . . P 4 -88.43 171.729 -68.169 1 53.25 ? C1' HFG 1003 D 1 HETATM 12 N N3 HFG . . . P 4 -87.969 172.786 -67.254 1 52.75 ? N3 HFG 1003 D 1 HETATM 13 C C4 HFG . . . P 4 -86.615 172.896 -67.012 1 54.16 ? C4 HFG 1003 D 1 HETATM 14 O O11 HFG . . . P 4 -85.806 172.128 -67.491 1 53.31 ? O11 HFG 1003 D 1 HETATM 15 C C10 HFG . . . P 4 -86.242 173.978 -66.105 1 56.97 ? C10 HFG 1003 D 1 HETATM 16 C C5 HFG . . . P 4 -84.917 174.181 -65.784 1 58.74 ? C5 HFG 1003 D 1 HETATM 17 C C2 HFG . . . P 4 -88.832 173.662 -66.721 1 51.64 ? C2 HFG 1003 D 1 HETATM 18 N N1 HFG . . . P 4 -88.543 174.632 -65.924 1 55 ? N1 HFG 1003 D 1 HETATM 19 C C9 HFG . . . P 4 -87.213 174.807 -65.585 1 58.76 ? C9 HFG 1003 D 1 HETATM 20 C C8 HFG . . . P 4 -86.857 175.839 -64.734 1 64.35 ? C8 HFG 1003 D 1 HETATM 21 C C7 HFG . . . P 4 -85.529 176.042 -64.397 1 70.31 ? C7 HFG 1003 D 1 HETATM 22 BR BR1 HFG . . . P 4 -85.079 177.433 -63.228 1 98.74 ? BR1 HFG 1003 D 1 HETATM 23 C C6 HFG . . . P 4 -84.559 175.207 -64.931 1 68.09 ? C6 HFG 1003 D 1 HETATM 24 CL CL1 HFG . . . P 4 -82.92 175.431 -64.553 1 89.99 ? CL1 HFG 1003 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #