data_5XIU # _model_server_result.job_id TSdHex8Z5bSxg68FSdohzQ _model_server_result.datetime_utc '2024-10-19 16:38:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5XIU # _exptl.entry_id 5XIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XIU _cell.length_a 59.442 _cell.length_b 78.548 _cell.length_c 31.015 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5XIU _atom_sites.fract_transf_matrix[1][1] 0.016823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 501 3 EDO EDO . D 3 EDO A 1 502 4 EDO EDO . E 3 EDO A 1 503 6 EDO EDO . F 3 EDO B 1 101 5 EDO EDO . G 3 EDO B 1 102 7 EDO EDO . H 4 HOH A 1 601 142 HOH HOH . H 4 HOH A 2 602 138 HOH HOH . H 4 HOH A 3 603 53 HOH HOH . H 4 HOH A 4 604 2 HOH HOH . H 4 HOH A 5 605 130 HOH HOH . H 4 HOH A 6 606 35 HOH HOH . H 4 HOH A 7 607 88 HOH HOH . H 4 HOH A 8 608 9 HOH HOH . H 4 HOH A 9 609 7 HOH HOH . H 4 HOH A 10 610 78 HOH HOH . H 4 HOH A 11 611 5 HOH HOH . H 4 HOH A 12 612 41 HOH HOH . H 4 HOH A 13 613 1 HOH HOH . H 4 HOH A 14 614 8 HOH HOH . H 4 HOH A 15 615 79 HOH HOH . H 4 HOH A 16 616 105 HOH HOH . H 4 HOH A 17 617 106 HOH HOH . H 4 HOH A 18 618 23 HOH HOH . H 4 HOH A 19 619 128 HOH HOH . H 4 HOH A 20 620 19 HOH HOH . H 4 HOH A 21 621 111 HOH HOH . H 4 HOH A 22 622 44 HOH HOH . H 4 HOH A 23 623 32 HOH HOH . H 4 HOH A 24 624 124 HOH HOH . H 4 HOH A 25 625 22 HOH HOH . H 4 HOH A 26 626 96 HOH HOH . H 4 HOH A 27 627 117 HOH HOH . H 4 HOH A 28 628 62 HOH HOH . H 4 HOH A 29 629 15 HOH HOH . H 4 HOH A 30 630 81 HOH HOH . H 4 HOH A 31 631 33 HOH HOH . H 4 HOH A 32 632 65 HOH HOH . H 4 HOH A 33 633 3 HOH HOH . H 4 HOH A 34 634 56 HOH HOH . H 4 HOH A 35 635 69 HOH HOH . H 4 HOH A 36 636 42 HOH HOH . H 4 HOH A 37 637 4 HOH HOH . H 4 HOH A 38 638 59 HOH HOH . H 4 HOH A 39 639 129 HOH HOH . H 4 HOH A 40 640 137 HOH HOH . H 4 HOH A 41 641 91 HOH HOH . H 4 HOH A 42 642 82 HOH HOH . H 4 HOH A 43 643 144 HOH HOH . H 4 HOH A 44 644 151 HOH HOH . H 4 HOH A 45 645 92 HOH HOH . H 4 HOH A 46 646 85 HOH HOH . H 4 HOH A 47 647 139 HOH HOH . H 4 HOH A 48 648 134 HOH HOH . H 4 HOH A 49 649 146 HOH HOH . H 4 HOH A 50 650 77 HOH HOH . H 4 HOH A 51 651 107 HOH HOH . H 4 HOH A 52 652 149 HOH HOH . H 4 HOH A 53 653 97 HOH HOH . H 4 HOH A 54 654 74 HOH HOH . H 4 HOH A 55 655 95 HOH HOH . H 4 HOH A 56 656 86 HOH HOH . H 4 HOH A 57 657 131 HOH HOH . H 4 HOH A 58 658 135 HOH HOH . I 4 HOH B 1 201 113 HOH HOH . I 4 HOH B 2 202 118 HOH HOH . I 4 HOH B 3 203 133 HOH HOH . I 4 HOH B 4 204 66 HOH HOH . I 4 HOH B 5 205 87 HOH HOH . I 4 HOH B 6 206 43 HOH HOH . I 4 HOH B 7 207 109 HOH HOH . I 4 HOH B 8 208 98 HOH HOH . I 4 HOH B 9 209 58 HOH HOH . I 4 HOH B 10 210 45 HOH HOH . I 4 HOH B 11 211 75 HOH HOH . I 4 HOH B 12 212 61 HOH HOH . I 4 HOH B 13 213 143 HOH HOH . I 4 HOH B 14 214 34 HOH HOH . I 4 HOH B 15 215 31 HOH HOH . I 4 HOH B 16 216 16 HOH HOH . I 4 HOH B 17 217 6 HOH HOH . I 4 HOH B 18 218 90 HOH HOH . I 4 HOH B 19 219 29 HOH HOH . I 4 HOH B 20 220 148 HOH HOH . I 4 HOH B 21 221 99 HOH HOH . I 4 HOH B 22 222 18 HOH HOH . I 4 HOH B 23 223 119 HOH HOH . I 4 HOH B 24 224 89 HOH HOH . I 4 HOH B 25 225 72 HOH HOH . I 4 HOH B 26 226 10 HOH HOH . I 4 HOH B 27 227 102 HOH HOH . I 4 HOH B 28 228 125 HOH HOH . I 4 HOH B 29 229 39 HOH HOH . I 4 HOH B 30 230 54 HOH HOH . I 4 HOH B 31 231 26 HOH HOH . I 4 HOH B 32 232 71 HOH HOH . I 4 HOH B 33 233 67 HOH HOH . I 4 HOH B 34 234 27 HOH HOH . I 4 HOH B 35 235 13 HOH HOH . I 4 HOH B 36 236 73 HOH HOH . I 4 HOH B 37 237 114 HOH HOH . I 4 HOH B 38 238 51 HOH HOH . I 4 HOH B 39 239 25 HOH HOH . I 4 HOH B 40 240 68 HOH HOH . I 4 HOH B 41 241 48 HOH HOH . I 4 HOH B 42 242 122 HOH HOH . I 4 HOH B 43 243 83 HOH HOH . I 4 HOH B 44 244 11 HOH HOH . I 4 HOH B 45 245 123 HOH HOH . I 4 HOH B 46 246 20 HOH HOH . I 4 HOH B 47 247 12 HOH HOH . I 4 HOH B 48 248 21 HOH HOH . I 4 HOH B 49 249 38 HOH HOH . I 4 HOH B 50 250 14 HOH HOH . I 4 HOH B 51 251 101 HOH HOH . I 4 HOH B 52 252 24 HOH HOH . I 4 HOH B 53 253 36 HOH HOH . I 4 HOH B 54 254 145 HOH HOH . I 4 HOH B 55 255 104 HOH HOH . I 4 HOH B 56 256 84 HOH HOH . I 4 HOH B 57 257 63 HOH HOH . I 4 HOH B 58 258 46 HOH HOH . I 4 HOH B 59 259 93 HOH HOH . I 4 HOH B 60 260 17 HOH HOH . I 4 HOH B 61 261 64 HOH HOH . I 4 HOH B 62 262 141 HOH HOH . I 4 HOH B 63 263 37 HOH HOH . I 4 HOH B 64 264 52 HOH HOH . I 4 HOH B 65 265 136 HOH HOH . I 4 HOH B 66 266 121 HOH HOH . I 4 HOH B 67 267 55 HOH HOH . I 4 HOH B 68 268 120 HOH HOH . I 4 HOH B 69 269 132 HOH HOH . I 4 HOH B 70 270 112 HOH HOH . I 4 HOH B 71 271 28 HOH HOH . I 4 HOH B 72 272 110 HOH HOH . I 4 HOH B 73 273 116 HOH HOH . I 4 HOH B 74 274 60 HOH HOH . I 4 HOH B 75 275 100 HOH HOH . I 4 HOH B 76 276 40 HOH HOH . I 4 HOH B 77 277 103 HOH HOH . I 4 HOH B 78 278 115 HOH HOH . I 4 HOH B 79 279 127 HOH HOH . I 4 HOH B 80 280 140 HOH HOH . I 4 HOH B 81 281 47 HOH HOH . I 4 HOH B 82 282 147 HOH HOH . I 4 HOH B 83 283 49 HOH HOH . I 4 HOH B 84 284 50 HOH HOH . I 4 HOH B 85 285 30 HOH HOH . I 4 HOH B 86 286 70 HOH HOH . I 4 HOH B 87 287 80 HOH HOH . I 4 HOH B 88 288 76 HOH HOH . I 4 HOH B 89 289 94 HOH HOH . I 4 HOH B 90 290 57 HOH HOH . I 4 HOH B 91 291 108 HOH HOH . I 4 HOH B 92 292 150 HOH HOH . I 4 HOH B 93 293 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -1.583 21.16 11.975 1 20.23 ? C1 EDO 501 A 1 HETATM 2 O O1 EDO . . . C 3 -0.851 20.371 12.926 1 26.28 ? O1 EDO 501 A 1 HETATM 3 C C2 EDO . . . C 3 -1.074 22.594 12.019 1 25.7 ? C2 EDO 501 A 1 HETATM 4 O O2 EDO . . . C 3 0.347 22.592 11.864 1 25.64 ? O2 EDO 501 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #