data_5XJ5 # _model_server_result.job_id nlJYbbXes6XtD26wYHbg7g _model_server_result.datetime_utc '2024-12-11 09:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":321}' # _entry.id 5XJ5 # _exptl.entry_id 5XJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XJ5 _cell.length_a 57.675 _cell.length_b 83.437 _cell.length_c 107.588 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id FME _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id FME _struct_conn.ptnr1_auth_seq_id 0 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 1 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.326 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 5XJ5 _atom_sites.fract_transf_matrix[1][1] 0.017339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 2 SO4 SO4 . C 2 SO4 A 1 302 3 SO4 SO4 . D 2 SO4 A 1 303 4 SO4 SO4 . E 2 SO4 A 1 304 5 SO4 SO4 . F 2 SO4 A 1 305 6 SO4 SO4 . G 2 SO4 A 1 306 8 SO4 SO4 . H 2 SO4 A 1 307 9 SO4 SO4 . I 3 78M A 1 308 2 78M 78M . J 3 78M A 1 309 4 78M 78M . K 3 78M A 1 310 5 78M 78M . L 3 78M A 1 311 6 78M 78M . M 3 78M A 1 312 8 78M 78M . N 3 78M A 1 313 10 78M 78M . O 3 78M A 1 314 11 78M 78M . P 3 78M A 1 315 12 78M 78M . Q 3 78M A 1 316 13 78M 78M . R 3 78M A 1 317 15 78M 78M . S 3 78M A 1 318 16 78M 78M . T 3 78M A 1 319 17 78M 78M . U 3 78M A 1 320 18 78M 78M . V 3 78M A 1 321 19 78M 78M . W 3 78M A 1 322 20 78M 78M . X 4 PGE A 1 323 1 PGE PGE . Y 5 GLY A 1 324 3 GLY GCI . Z 6 HOH A 1 401 77 HOH HOH . Z 6 HOH A 2 402 70 HOH HOH . Z 6 HOH A 3 403 68 HOH HOH . Z 6 HOH A 4 404 43 HOH HOH . Z 6 HOH A 5 405 55 HOH HOH . Z 6 HOH A 6 406 78 HOH HOH . Z 6 HOH A 7 407 98 HOH HOH . Z 6 HOH A 8 408 65 HOH HOH . Z 6 HOH A 9 409 108 HOH HOH . Z 6 HOH A 10 410 110 HOH HOH . Z 6 HOH A 11 411 35 HOH HOH . Z 6 HOH A 12 412 116 HOH HOH . Z 6 HOH A 13 413 62 HOH HOH . Z 6 HOH A 14 414 9 HOH HOH . Z 6 HOH A 15 415 19 HOH HOH . Z 6 HOH A 16 416 80 HOH HOH . Z 6 HOH A 17 417 18 HOH HOH . Z 6 HOH A 18 418 109 HOH HOH . Z 6 HOH A 19 419 2 HOH HOH . Z 6 HOH A 20 420 20 HOH HOH . Z 6 HOH A 21 421 73 HOH HOH . Z 6 HOH A 22 422 51 HOH HOH . Z 6 HOH A 23 423 75 HOH HOH . Z 6 HOH A 24 424 24 HOH HOH . Z 6 HOH A 25 425 59 HOH HOH . Z 6 HOH A 26 426 25 HOH HOH . Z 6 HOH A 27 427 57 HOH HOH . Z 6 HOH A 28 428 118 HOH HOH . Z 6 HOH A 29 429 82 HOH HOH . Z 6 HOH A 30 430 1 HOH HOH . Z 6 HOH A 31 431 122 HOH HOH . Z 6 HOH A 32 432 119 HOH HOH . Z 6 HOH A 33 433 28 HOH HOH . Z 6 HOH A 34 434 67 HOH HOH . Z 6 HOH A 35 435 81 HOH HOH . Z 6 HOH A 36 436 14 HOH HOH . Z 6 HOH A 37 437 7 HOH HOH . Z 6 HOH A 38 438 79 HOH HOH . Z 6 HOH A 39 439 22 HOH HOH . Z 6 HOH A 40 440 3 HOH HOH . Z 6 HOH A 41 441 11 HOH HOH . Z 6 HOH A 42 442 13 HOH HOH . Z 6 HOH A 43 443 36 HOH HOH . Z 6 HOH A 44 444 17 HOH HOH . Z 6 HOH A 45 445 10 HOH HOH . Z 6 HOH A 46 446 37 HOH HOH . Z 6 HOH A 47 447 71 HOH HOH . Z 6 HOH A 48 448 115 HOH HOH . Z 6 HOH A 49 449 6 HOH HOH . Z 6 HOH A 50 450 125 HOH HOH . Z 6 HOH A 51 451 8 HOH HOH . Z 6 HOH A 52 452 29 HOH HOH . Z 6 HOH A 53 453 12 HOH HOH . Z 6 HOH A 54 454 32 HOH HOH . Z 6 HOH A 55 455 101 HOH HOH . Z 6 HOH A 56 456 5 HOH HOH . Z 6 HOH A 57 457 93 HOH HOH . Z 6 HOH A 58 458 76 HOH HOH . Z 6 HOH A 59 459 53 HOH HOH . Z 6 HOH A 60 460 126 HOH HOH . Z 6 HOH A 61 461 52 HOH HOH . Z 6 HOH A 62 462 26 HOH HOH . Z 6 HOH A 63 463 66 HOH HOH . Z 6 HOH A 64 464 86 HOH HOH . Z 6 HOH A 65 465 121 HOH HOH . Z 6 HOH A 66 466 58 HOH HOH . Z 6 HOH A 67 467 120 HOH HOH . Z 6 HOH A 68 468 114 HOH HOH . Z 6 HOH A 69 469 113 HOH HOH . Z 6 HOH A 70 470 40 HOH HOH . Z 6 HOH A 71 471 103 HOH HOH . Z 6 HOH A 72 472 124 HOH HOH . Z 6 HOH A 73 473 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . V 3 41.18 22.222 9.792 1 65.06 ? O21 78M 321 A 1 HETATM 2 C C20 78M . . . V 3 40.946 21.996 11.174 1 50.57 ? C20 78M 321 A 1 HETATM 3 C C18 78M . . . V 3 39.598 22.529 11.601 1 52.37 ? C18 78M 321 A 1 HETATM 4 O O19 78M . . . V 3 39.574 23.955 11.508 1 62.48 ? O19 78M 321 A 1 HETATM 5 C C17 78M . . . V 3 39.217 22.071 12.988 1 46.39 ? C17 78M 321 A 1 HETATM 6 O O2 78M . . . V 3 38.389 23.036 13.68 1 52.38 ? O2 78M 321 A 1 HETATM 7 C C1 78M . . . V 3 39.024 23.918 14.456 1 49.34 ? C1 78M 321 A 1 HETATM 8 O O1 78M . . . V 3 40.188 24.179 14.345 1 54.81 ? O1 78M 321 A 1 HETATM 9 C C2 78M . . . V 3 38.116 24.493 15.505 1 46.63 ? C2 78M 321 A 1 HETATM 10 C C3 78M . . . V 3 37.498 25.828 15.127 1 49.17 ? C3 78M 321 A 1 HETATM 11 C C4 78M . . . V 3 36.801 26.534 16.289 1 43.34 ? C4 78M 321 A 1 HETATM 12 C C5 78M . . . V 3 37.741 27.27 17.237 1 46.9 ? C5 78M 321 A 1 HETATM 13 C C6 78M . . . V 3 37.07 28.35 18.1 1 51.63 ? C6 78M 321 A 1 HETATM 14 C C7 78M . . . V 3 36.911 27.949 19.537 1 52.1 ? C7 78M 321 A 1 HETATM 15 C C8 78M . . . V 3 36.581 28.723 20.566 1 53.07 ? C8 78M 321 A 1 HETATM 16 C C9 78M . . . V 3 36.272 30.194 20.547 1 43.68 ? C9 78M 321 A 1 HETATM 17 C C10 78M . . . V 3 36.303 30.817 21.95 1 41.12 ? C10 78M 321 A 1 HETATM 18 C C11 78M . . . V 3 37.691 30.912 22.57 1 45.63 ? C11 78M 321 A 1 HETATM 19 C C12 78M . . . V 3 37.726 31.395 24.017 1 44.74 ? C12 78M 321 A 1 HETATM 20 C C13 78M . . . V 3 36.975 32.693 24.289 1 45.15 ? C13 78M 321 A 1 HETATM 21 C C15 78M . . . V 3 36.006 34.139 26.151 1 36.44 ? C15 78M 321 A 1 HETATM 22 C C14 78M . . . V 3 37.123 33.206 25.716 1 41.98 ? C14 78M 321 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #