data_5XJ6 # _model_server_result.job_id 0UCAs1OG6gVI7aLXZuRdqQ _model_server_result.datetime_utc '2024-12-11 23:22:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5XJ6 # _exptl.entry_id 5XJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.074 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SN-GLYCEROL-3-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XJ6 _cell.length_a 42.148 _cell.length_b 53.772 _cell.length_c 87.688 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H9 O6 P' _chem_comp.formula_weight 172.074 _chem_comp.id G3P _chem_comp.mon_nstd_flag . _chem_comp.name SN-GLYCEROL-3-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 G3P sing 91 n n C1 C2 G3P sing 92 n n C2 O2 G3P sing 93 n n C2 C3 G3P sing 94 n n C3 O1P G3P sing 95 n n O1P P G3P sing 96 n n O4P P G3P sing 97 n n O2P P G3P doub 98 n n O3P P G3P sing 99 n n O1 HO1 G3P sing 100 n n C1 H11 G3P sing 101 n n C1 H12 G3P sing 102 n n C2 H2 G3P sing 103 n n O2 HO2 G3P sing 104 n n C3 H31 G3P sing 105 n n C3 H32 G3P sing 106 n n O3P HOP3 G3P sing 107 n n O4P HOP4 G3P sing 108 n n # _atom_sites.entry_id 5XJ6 _atom_sites.fract_transf_matrix[1][1] 0.023726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G3P A 1 301 1 G3P G3P . C 3 OLC A 1 302 1 OLC OLC . D 3 OLC A 1 303 2 OLC OLC . E 3 OLC A 1 304 3 OLC OLC . F 3 OLC A 1 305 4 OLC OLC . G 4 PO4 A 1 306 1 PO4 PO4 . H 5 HOH A 1 401 17 HOH HOH . H 5 HOH A 2 402 12 HOH HOH . H 5 HOH A 3 403 6 HOH HOH . H 5 HOH A 4 404 2 HOH HOH . H 5 HOH A 5 405 8 HOH HOH . H 5 HOH A 6 406 4 HOH HOH . H 5 HOH A 7 407 15 HOH HOH . H 5 HOH A 8 408 7 HOH HOH . H 5 HOH A 9 409 3 HOH HOH . H 5 HOH A 10 410 9 HOH HOH . H 5 HOH A 11 411 5 HOH HOH . H 5 HOH A 12 412 10 HOH HOH . H 5 HOH A 13 413 14 HOH HOH . H 5 HOH A 14 414 16 HOH HOH . H 5 HOH A 15 415 13 HOH HOH . H 5 HOH A 16 416 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 G3P . . . B 2 49.844 13.621 97.546 1 61.28 ? O1 G3P 301 A 1 HETATM 2 C C1 G3P . . . B 2 48.997 14.386 96.699 1 48.21 ? C1 G3P 301 A 1 HETATM 3 C C2 G3P . . . B 2 47.666 13.699 96.5 1 44.93 ? C2 G3P 301 A 1 HETATM 4 O O2 G3P . . . B 2 46.848 13.843 97.665 1 45.78 ? O2 G3P 301 A 1 HETATM 5 C C3 G3P . . . B 2 46.929 14.2 95.285 1 33.04 ? C3 G3P 301 A 1 HETATM 6 O O1P G3P . . . B 2 47.881 14.321 94.209 1 37.2 ? O1P G3P 301 A 1 HETATM 7 O O4P G3P . . . B 2 46.55 14.029 92.107 1 51.67 ? O4P G3P 301 A 1 HETATM 8 O O2P G3P . . . B 2 48.799 15.171 92.014 1 43.84 ? O2P G3P 301 A 1 HETATM 9 O O3P G3P . . . B 2 46.815 16.291 93.082 1 38.85 ? O3P G3P 301 A 1 HETATM 10 P P G3P . . . B 2 47.543 14.98 92.792 1 47.28 ? P G3P 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #