data_5XJ6
#
_model_server_result.job_id            OJnqCB3NqIyuU6KnauyrZQ 
_model_server_result.datetime_utc      '2024-12-04 09:47:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xj6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    5XJ6 
#
_exptl.entry_id    5XJ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XJ6 
_cell.length_a            42.148 
_cell.length_b            53.772 
_cell.length_c            87.688 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XJ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 263 n n 
C10 C9 OLC doub 264 n n 
C10 C11 OLC sing 265 n n 
C9 C8 OLC sing 266 n n 
C17 C16 OLC sing 267 z n 
C11 C12 OLC sing 268 n n 
C8 C7 OLC sing 269 n n 
C24 C22 OLC sing 270 n n 
C24 O25 OLC sing 271 n n 
C16 C15 OLC sing 272 n n 
C12 C13 OLC sing 273 n n 
C7 C6 OLC sing 274 n n 
C15 C14 OLC sing 275 n n 
C13 C14 OLC sing 276 n n 
C6 C5 OLC sing 277 n n 
C5 C4 OLC sing 278 n n 
C4 C3 OLC sing 279 n n 
C3 C2 OLC sing 280 n n 
C2 C1 OLC sing 281 n n 
C21 C22 OLC sing 282 n n 
C21 O20 OLC sing 283 n n 
C1 O19 OLC doub 284 n n 
C1 O20 OLC sing 285 n n 
C22 O23 OLC sing 286 n n 
C18 H18 OLC sing 287 n n 
C18 H18A OLC sing 288 n n 
C18 H18B OLC sing 289 n n 
C10 H10 OLC sing 290 n n 
C9 H9 OLC sing 291 n n 
C17 H17 OLC sing 292 n n 
C17 H17A OLC sing 293 n n 
C11 H11 OLC sing 294 n n 
C11 H11A OLC sing 295 n n 
C8 H8 OLC sing 296 n n 
C8 H8A OLC sing 297 n n 
C24 H24 OLC sing 298 n n 
C24 H24A OLC sing 299 n n 
C16 H16 OLC sing 300 n n 
C16 H16A OLC sing 301 n n 
C12 H12 OLC sing 302 n n 
C12 H12A OLC sing 303 n n 
C7 H7 OLC sing 304 n n 
C7 H7A OLC sing 305 n n 
C15 H15 OLC sing 306 n n 
C15 H15A OLC sing 307 n n 
C13 H13 OLC sing 308 n n 
C13 H13A OLC sing 309 n n 
C6 H6 OLC sing 310 n n 
C6 H6A OLC sing 311 n n 
C14 H14 OLC sing 312 n n 
C14 H14A OLC sing 313 n n 
C5 H5 OLC sing 314 n n 
C5 H5A OLC sing 315 n n 
C4 H4 OLC sing 316 n n 
C4 H4A OLC sing 317 n n 
C3 H3 OLC sing 318 n n 
C3 H3A OLC sing 319 n n 
C2 H2 OLC sing 320 n n 
C2 H2A OLC sing 321 n n 
C21 H21 OLC sing 322 n n 
C21 H21A OLC sing 323 n n 
C22 H22 OLC sing 324 n n 
O25 HO25 OLC sing 325 n n 
O23 HO23 OLC sing 326 n n 
#
_atom_sites.entry_id                     5XJ6 
_atom_sites.fract_transf_matrix[1][1]    0.023726 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018597 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011404 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 G3P A 1 301 1 G3P G3P . 
C 3 OLC A 1 302 1 OLC OLC . 
D 3 OLC A 1 303 2 OLC OLC . 
E 3 OLC A 1 304 3 OLC OLC . 
F 3 OLC A 1 305 4 OLC OLC . 
G 4 PO4 A 1 306 1 PO4 PO4 . 
H 5 HOH A 1 401 17 HOH HOH . 
H 5 HOH A 2 402 12 HOH HOH . 
H 5 HOH A 3 403 6 HOH HOH . 
H 5 HOH A 4 404 2 HOH HOH . 
H 5 HOH A 5 405 8 HOH HOH . 
H 5 HOH A 6 406 4 HOH HOH . 
H 5 HOH A 7 407 15 HOH HOH . 
H 5 HOH A 8 408 7 HOH HOH . 
H 5 HOH A 9 409 3 HOH HOH . 
H 5 HOH A 10 410 9 HOH HOH . 
H 5 HOH A 11 411 5 HOH HOH . 
H 5 HOH A 12 412 10 HOH HOH . 
H 5 HOH A 13 413 14 HOH HOH . 
H 5 HOH A 14 414 16 HOH HOH . 
H 5 HOH A 15 415 13 HOH HOH . 
H 5 HOH A 16 416 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . C 3 46.259 15.158 112.008 1 38.39 ? C18 OLC 302 A 1 
HETATM 2 C C10 OLC . . . C 3 47.25 8.268 105.248 1 43.76 ? C10 OLC 302 A 1 
HETATM 3 C C9 OLC . . . C 3 48.032 7.917 104.243 1 46.8 ? C9 OLC 302 A 1 
HETATM 4 C C17 OLC . . . C 3 45.753 15.011 110.592 1 26.46 ? C17 OLC 302 A 1 
HETATM 5 C C11 OLC . . . C 3 46.456 9.527 105.358 1 37.23 ? C11 OLC 302 A 1 
HETATM 6 C C8 OLC . . . C 3 48.275 8.701 102.994 1 38.04 ? C8 OLC 302 A 1 
HETATM 7 C C24 OLC . . . C 3 52.15 5.407 92.599 1 63.88 ? C24 OLC 302 A 1 
HETATM 8 C C16 OLC . . . C 3 46.564 13.991 109.831 1 37.13 ? C16 OLC 302 A 1 
HETATM 9 C C12 OLC . . . C 3 46.668 10.165 106.716 1 41.22 ? C12 OLC 302 A 1 
HETATM 10 C C7 OLC . . . C 3 49.27 8.027 102.046 1 49.56 ? C7 OLC 302 A 1 
HETATM 11 C C15 OLC . . . C 3 45.943 13.484 108.548 1 36.74 ? C15 OLC 302 A 1 
HETATM 12 C C13 OLC . . . C 3 46.074 11.547 106.871 1 43.56 ? C13 OLC 302 A 1 
HETATM 13 C C6 OLC . . . C 3 49.268 8.624 100.649 1 47.02 ? C6 OLC 302 A 1 
HETATM 14 C C14 OLC . . . C 3 46.664 12.244 108.074 1 42.17 ? C14 OLC 302 A 1 
HETATM 15 C C5 OLC . . . C 3 50.434 8.225 99.751 1 56.48 ? C5 OLC 302 A 1 
HETATM 16 C C4 OLC . . . C 3 50.491 6.769 99.302 1 59.37 ? C4 OLC 302 A 1 
HETATM 17 C C3 OLC . . . C 3 51.361 6.559 98.061 1 68.17 ? C3 OLC 302 A 1 
HETATM 18 C C2 OLC . . . C 3 51.323 7.78 97.151 1 69.21 ? C2 OLC 302 A 1 
HETATM 19 C C21 OLC . . . C 3 51.177 7.539 93.502 1 65.63 ? C21 OLC 302 A 1 
HETATM 20 C C1 OLC . . . C 3 51.88 7.602 95.768 1 65.48 ? C1 OLC 302 A 1 
HETATM 21 C C22 OLC . . . C 3 50.925 6.285 92.705 1 62.38 ? C22 OLC 302 A 1 
HETATM 22 O O19 OLC . . . C 3 53.025 7.788 95.455 1 64.46 ? O19 OLC 302 A 1 
HETATM 23 O O25 OLC . . . C 3 52.071 4.565 91.457 1 63.05 ? O25 OLC 302 A 1 
HETATM 24 O O23 OLC . . . C 3 49.845 5.549 93.289 1 66.89 ? O23 OLC 302 A 1 
HETATM 25 O O20 OLC . . . C 3 50.918 7.278 94.901 1 64.6 ? O20 OLC 302 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#