data_5XJ7
#
_model_server_result.job_id            iA0bbUyeJTsCNW6hgCdz8Q 
_model_server_result.datetime_utc      '2024-12-11 10:39:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5XJ7 
#
_exptl.entry_id    5XJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XJ7 
_cell.length_a            46.224 
_cell.length_b            65.599 
_cell.length_c            84.678 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C FME 1 A FME 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A O PRO 96 A PRO 95 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc2 A O PHE 98 A PHE 97 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc3 A O PHE 101 A PHE 100 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc4 K K K . A K 310 1_555 N O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
metalc ? metalc5 L K K . A K 311 1_555 M O1 PO4 . A PO4 312 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.231 ? 
metalc ? metalc6 L K K . A K 311 1_555 M O4 PO4 . A PO4 312 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.984 ? 
metalc ? metalc7 L K K . A K 311 1_555 M O4 PO4 . A PO4 312 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc8 L K K . A K 311 1_555 M O2 PO4 . A PO4 312 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.729 ? 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     5XJ7 
_atom_sites.fract_transf_matrix[1][1]    0.021634 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015244 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 78M A 1 301 1 78M 78M . 
C 2 78M A 1 302 2 78M 78M . 
D 2 78M A 1 303 3 78M 78M . 
E 2 78M A 1 304 4 78M 78M . 
F 2 78M A 1 305 6 78M 78M . 
G 2 78M A 1 306 7 78M 78M . 
H 2 78M A 1 307 8 78M 78M . 
I 3 87O A 1 308 1 87O PPA . 
J 3 87O A 1 309 2 87O PPA . 
K 4 K A 1 310 1 K K . 
L 4 K A 1 311 3 K K . 
M 5 PO4 A 1 312 1 PO4 PO4 . 
N 6 HOH A 1 401 62 HOH HOH . 
N 6 HOH A 2 402 64 HOH HOH . 
N 6 HOH A 3 403 56 HOH HOH . 
N 6 HOH A 4 404 21 HOH HOH . 
N 6 HOH A 5 405 58 HOH HOH . 
N 6 HOH A 6 406 51 HOH HOH . 
N 6 HOH A 7 407 5 HOH HOH . 
N 6 HOH A 8 408 61 HOH HOH . 
N 6 HOH A 9 409 41 HOH HOH . 
N 6 HOH A 10 410 49 HOH HOH . 
N 6 HOH A 11 411 44 HOH HOH . 
N 6 HOH A 12 412 37 HOH HOH . 
N 6 HOH A 13 413 9 HOH HOH . 
N 6 HOH A 14 414 25 HOH HOH . 
N 6 HOH A 15 415 53 HOH HOH . 
N 6 HOH A 16 416 23 HOH HOH . 
N 6 HOH A 17 417 11 HOH HOH . 
N 6 HOH A 18 418 19 HOH HOH . 
N 6 HOH A 19 419 14 HOH HOH . 
N 6 HOH A 20 420 1 HOH HOH . 
N 6 HOH A 21 421 15 HOH HOH . 
N 6 HOH A 22 422 20 HOH HOH . 
N 6 HOH A 23 423 55 HOH HOH . 
N 6 HOH A 24 424 27 HOH HOH . 
N 6 HOH A 25 425 38 HOH HOH . 
N 6 HOH A 26 426 3 HOH HOH . 
N 6 HOH A 27 427 8 HOH HOH . 
N 6 HOH A 28 428 63 HOH HOH . 
N 6 HOH A 29 429 12 HOH HOH . 
N 6 HOH A 30 430 13 HOH HOH . 
N 6 HOH A 31 431 18 HOH HOH . 
N 6 HOH A 32 432 26 HOH HOH . 
N 6 HOH A 33 433 2 HOH HOH . 
N 6 HOH A 34 434 57 HOH HOH . 
N 6 HOH A 35 435 24 HOH HOH . 
N 6 HOH A 36 436 17 HOH HOH . 
N 6 HOH A 37 437 28 HOH HOH . 
N 6 HOH A 38 438 43 HOH HOH . 
N 6 HOH A 39 439 4 HOH HOH . 
N 6 HOH A 40 440 16 HOH HOH . 
N 6 HOH A 41 441 47 HOH HOH . 
N 6 HOH A 42 442 30 HOH HOH . 
N 6 HOH A 43 443 60 HOH HOH . 
N 6 HOH A 44 444 39 HOH HOH . 
N 6 HOH A 45 445 6 HOH HOH . 
N 6 HOH A 46 446 40 HOH HOH . 
N 6 HOH A 47 447 35 HOH HOH . 
N 6 HOH A 48 448 31 HOH HOH . 
N 6 HOH A 49 449 48 HOH HOH . 
N 6 HOH A 50 450 10 HOH HOH . 
N 6 HOH A 51 451 65 HOH HOH . 
N 6 HOH A 52 452 46 HOH HOH . 
N 6 HOH A 53 453 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . D 2 -9.715 -6.294 -34.412 1 54.25 ? O21 78M 303 A 1 
HETATM 2 C C20 78M . . . D 2 -8.575 -6.482 -33.583 1 52.27 ? C20 78M 303 A 1 
HETATM 3 C C18 78M . . . D 2 -8.76 -7.723 -32.743 1 53.83 ? C18 78M 303 A 1 
HETATM 4 O O19 78M . . . D 2 -10.039 -7.689 -32.108 1 55.48 ? O19 78M 303 A 1 
HETATM 5 C C17 78M . . . D 2 -7.719 -7.882 -31.666 1 58.12 ? C17 78M 303 A 1 
HETATM 6 O O2 78M . . . D 2 -8.515 -8.72 -30.798 1 54.75 ? O2 78M 303 A 1 
HETATM 7 C C1 78M . . . D 2 -8.05 -8.999 -29.583 1 54.14 ? C1 78M 303 A 1 
HETATM 8 O O1 78M . . . D 2 -6.944 -8.717 -29.208 1 57.84 ? O1 78M 303 A 1 
HETATM 9 C C2 78M . . . D 2 -9.102 -9.684 -28.764 1 49.47 ? C2 78M 303 A 1 
HETATM 10 C C3 78M . . . D 2 -8.607 -10.902 -28.004 1 52.77 ? C3 78M 303 A 1 
HETATM 11 C C4 78M . . . D 2 -7.78 -10.532 -26.789 1 49.53 ? C4 78M 303 A 1 
HETATM 12 C C5 78M . . . D 2 -7.458 -11.715 -25.9 1 52.83 ? C5 78M 303 A 1 
HETATM 13 C C6 78M . . . D 2 -6.762 -11.329 -24.607 1 51.7 ? C6 78M 303 A 1 
HETATM 14 C C7 78M . . . D 2 -6.926 -12.387 -23.569 1 59.53 ? C7 78M 303 A 1 
HETATM 15 C C8 78M . . . D 2 -6.281 -12.447 -22.424 1 63.38 ? C8 78M 303 A 1 
HETATM 16 C C9 78M . . . D 2 -5.263 -11.464 -21.927 1 58.6 ? C9 78M 303 A 1 
HETATM 17 C C10 78M . . . D 2 -4.966 -11.7 -20.447 1 58.82 ? C10 78M 303 A 1 
HETATM 18 C C11 78M . . . D 2 -6.193 -12.171 -19.675 1 59.3 ? C11 78M 303 A 1 
HETATM 19 C C12 78M . . . D 2 -5.89 -12.771 -18.309 1 62.28 ? C12 78M 303 A 1 
HETATM 20 C C13 78M . . . D 2 -5.292 -14.17 -18.346 1 53.95 ? C13 78M 303 A 1 
HETATM 21 C C15 78M . . . D 2 -3.753 -14.184 -16.319 1 64.04 ? C15 78M 303 A 1 
HETATM 22 C C14 78M . . . D 2 -4.993 -14.763 -16.974 1 60.16 ? C14 78M 303 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#