data_5XJ7 # _model_server_result.job_id WCscrJiDYZ5uC272lLwnYw _model_server_result.datetime_utc '2024-11-07 22:51:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5XJ7 # _exptl.entry_id 5XJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XJ7 _cell.length_a 46.224 _cell.length_b 65.599 _cell.length_c 84.678 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A O PRO 96 A PRO 95 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc2 A O PHE 98 A PHE 97 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc3 A O PHE 101 A PHE 100 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc4 K K K . A K 310 1_555 N O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc5 L K K . A K 311 1_555 M O1 PO4 . A PO4 312 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.231 ? metalc ? metalc6 L K K . A K 311 1_555 M O4 PO4 . A PO4 312 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.984 ? metalc ? metalc7 L K K . A K 311 1_555 M O4 PO4 . A PO4 312 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 L K K . A K 311 1_555 M O2 PO4 . A PO4 312 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.729 ? # _chem_comp.formula 'C18 H34 O4' _chem_comp.formula_weight 314.46 _chem_comp.id 78M _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '7.8 MONOACYLGLYCEROL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C20 78M sing 1 n n C20 C18 78M sing 2 n n C18 O19 78M sing 3 n n C18 C17 78M sing 4 n n C17 O2 78M sing 5 n n O2 C1 78M sing 6 n n C1 O1 78M doub 7 n n C1 C2 78M sing 8 n n C2 C3 78M sing 9 n n C3 C4 78M sing 10 n n C4 C5 78M sing 11 n n C5 C6 78M sing 12 n n C6 C7 78M sing 13 n n C7 C8 78M doub 14 z n C8 C9 78M sing 15 n n C9 C10 78M sing 16 n n C10 C11 78M sing 17 n n C11 C12 78M sing 18 n n C12 C13 78M sing 19 n n C15 C14 78M sing 20 n n C13 C14 78M sing 21 n n O21 H21 78M sing 22 n n C20 H201 78M sing 23 n n C20 H202 78M sing 24 n n C18 H18 78M sing 25 n n O19 H19 78M sing 26 n n C17 H171 78M sing 27 n n C17 H172 78M sing 28 n n C2 H21C 78M sing 29 n n C2 H22C 78M sing 30 n n C3 H31C 78M sing 31 n n C3 H32C 78M sing 32 n n C4 H41C 78M sing 33 n n C4 H42C 78M sing 34 n n C5 H51C 78M sing 35 n n C5 H52C 78M sing 36 n n C6 H61C 78M sing 37 n n C6 H62C 78M sing 38 n n C7 H7 78M sing 39 n n C8 H8 78M sing 40 n n C9 H91C 78M sing 41 n n C9 H92C 78M sing 42 n n C10 H101 78M sing 43 n n C10 H102 78M sing 44 n n C11 H111 78M sing 45 n n C11 H112 78M sing 46 n n C12 H121 78M sing 47 n n C12 H122 78M sing 48 n n C13 H131 78M sing 49 n n C13 H132 78M sing 50 n n C15 H151 78M sing 51 n n C15 H152 78M sing 52 n n C15 H153 78M sing 53 n n C14 H141 78M sing 54 n n C14 H142 78M sing 55 n n # _atom_sites.entry_id 5XJ7 _atom_sites.fract_transf_matrix[1][1] 0.021634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 78M A 1 301 1 78M 78M . C 2 78M A 1 302 2 78M 78M . D 2 78M A 1 303 3 78M 78M . E 2 78M A 1 304 4 78M 78M . F 2 78M A 1 305 6 78M 78M . G 2 78M A 1 306 7 78M 78M . H 2 78M A 1 307 8 78M 78M . I 3 87O A 1 308 1 87O PPA . J 3 87O A 1 309 2 87O PPA . K 4 K A 1 310 1 K K . L 4 K A 1 311 3 K K . M 5 PO4 A 1 312 1 PO4 PO4 . N 6 HOH A 1 401 62 HOH HOH . N 6 HOH A 2 402 64 HOH HOH . N 6 HOH A 3 403 56 HOH HOH . N 6 HOH A 4 404 21 HOH HOH . N 6 HOH A 5 405 58 HOH HOH . N 6 HOH A 6 406 51 HOH HOH . N 6 HOH A 7 407 5 HOH HOH . N 6 HOH A 8 408 61 HOH HOH . N 6 HOH A 9 409 41 HOH HOH . N 6 HOH A 10 410 49 HOH HOH . N 6 HOH A 11 411 44 HOH HOH . N 6 HOH A 12 412 37 HOH HOH . N 6 HOH A 13 413 9 HOH HOH . N 6 HOH A 14 414 25 HOH HOH . N 6 HOH A 15 415 53 HOH HOH . N 6 HOH A 16 416 23 HOH HOH . N 6 HOH A 17 417 11 HOH HOH . N 6 HOH A 18 418 19 HOH HOH . N 6 HOH A 19 419 14 HOH HOH . N 6 HOH A 20 420 1 HOH HOH . N 6 HOH A 21 421 15 HOH HOH . N 6 HOH A 22 422 20 HOH HOH . N 6 HOH A 23 423 55 HOH HOH . N 6 HOH A 24 424 27 HOH HOH . N 6 HOH A 25 425 38 HOH HOH . N 6 HOH A 26 426 3 HOH HOH . N 6 HOH A 27 427 8 HOH HOH . N 6 HOH A 28 428 63 HOH HOH . N 6 HOH A 29 429 12 HOH HOH . N 6 HOH A 30 430 13 HOH HOH . N 6 HOH A 31 431 18 HOH HOH . N 6 HOH A 32 432 26 HOH HOH . N 6 HOH A 33 433 2 HOH HOH . N 6 HOH A 34 434 57 HOH HOH . N 6 HOH A 35 435 24 HOH HOH . N 6 HOH A 36 436 17 HOH HOH . N 6 HOH A 37 437 28 HOH HOH . N 6 HOH A 38 438 43 HOH HOH . N 6 HOH A 39 439 4 HOH HOH . N 6 HOH A 40 440 16 HOH HOH . N 6 HOH A 41 441 47 HOH HOH . N 6 HOH A 42 442 30 HOH HOH . N 6 HOH A 43 443 60 HOH HOH . N 6 HOH A 44 444 39 HOH HOH . N 6 HOH A 45 445 6 HOH HOH . N 6 HOH A 46 446 40 HOH HOH . N 6 HOH A 47 447 35 HOH HOH . N 6 HOH A 48 448 31 HOH HOH . N 6 HOH A 49 449 48 HOH HOH . N 6 HOH A 50 450 10 HOH HOH . N 6 HOH A 51 451 65 HOH HOH . N 6 HOH A 52 452 46 HOH HOH . N 6 HOH A 53 453 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 78M . . . D 2 -9.715 -6.294 -34.412 1 54.25 ? O21 78M 303 A 1 HETATM 2 C C20 78M . . . D 2 -8.575 -6.482 -33.583 1 52.27 ? C20 78M 303 A 1 HETATM 3 C C18 78M . . . D 2 -8.76 -7.723 -32.743 1 53.83 ? C18 78M 303 A 1 HETATM 4 O O19 78M . . . D 2 -10.039 -7.689 -32.108 1 55.48 ? O19 78M 303 A 1 HETATM 5 C C17 78M . . . D 2 -7.719 -7.882 -31.666 1 58.12 ? C17 78M 303 A 1 HETATM 6 O O2 78M . . . D 2 -8.515 -8.72 -30.798 1 54.75 ? O2 78M 303 A 1 HETATM 7 C C1 78M . . . D 2 -8.05 -8.999 -29.583 1 54.14 ? C1 78M 303 A 1 HETATM 8 O O1 78M . . . D 2 -6.944 -8.717 -29.208 1 57.84 ? O1 78M 303 A 1 HETATM 9 C C2 78M . . . D 2 -9.102 -9.684 -28.764 1 49.47 ? C2 78M 303 A 1 HETATM 10 C C3 78M . . . D 2 -8.607 -10.902 -28.004 1 52.77 ? C3 78M 303 A 1 HETATM 11 C C4 78M . . . D 2 -7.78 -10.532 -26.789 1 49.53 ? C4 78M 303 A 1 HETATM 12 C C5 78M . . . D 2 -7.458 -11.715 -25.9 1 52.83 ? C5 78M 303 A 1 HETATM 13 C C6 78M . . . D 2 -6.762 -11.329 -24.607 1 51.7 ? C6 78M 303 A 1 HETATM 14 C C7 78M . . . D 2 -6.926 -12.387 -23.569 1 59.53 ? C7 78M 303 A 1 HETATM 15 C C8 78M . . . D 2 -6.281 -12.447 -22.424 1 63.38 ? C8 78M 303 A 1 HETATM 16 C C9 78M . . . D 2 -5.263 -11.464 -21.927 1 58.6 ? C9 78M 303 A 1 HETATM 17 C C10 78M . . . D 2 -4.966 -11.7 -20.447 1 58.82 ? C10 78M 303 A 1 HETATM 18 C C11 78M . . . D 2 -6.193 -12.171 -19.675 1 59.3 ? C11 78M 303 A 1 HETATM 19 C C12 78M . . . D 2 -5.89 -12.771 -18.309 1 62.28 ? C12 78M 303 A 1 HETATM 20 C C13 78M . . . D 2 -5.292 -14.17 -18.346 1 53.95 ? C13 78M 303 A 1 HETATM 21 C C15 78M . . . D 2 -3.753 -14.184 -16.319 1 64.04 ? C15 78M 303 A 1 HETATM 22 C C14 78M . . . D 2 -4.993 -14.763 -16.974 1 60.16 ? C14 78M 303 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 22 #