data_5XJ7 # _model_server_result.job_id 7QjpBsSPWQYog8EYqtdB7w _model_server_result.datetime_utc '2024-12-11 10:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 5XJ7 # _exptl.entry_id 5XJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.404 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'phosphono hexadecanoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XJ7 _cell.length_a 46.224 _cell.length_b 65.599 _cell.length_c 84.678 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A O PRO 96 A PRO 95 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc2 A O PHE 98 A PHE 97 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc3 A O PHE 101 A PHE 100 1_555 K K K . A K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc4 K K K . A K 310 1_555 N O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc5 L K K . A K 311 1_555 M O1 PO4 . A PO4 312 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.231 ? metalc ? metalc6 L K K . A K 311 1_555 M O4 PO4 . A PO4 312 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.984 ? metalc ? metalc7 L K K . A K 311 1_555 M O4 PO4 . A PO4 312 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.525 ? metalc ? metalc8 L K K . A K 311 1_555 M O2 PO4 . A PO4 312 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.729 ? # _chem_comp.formula 'C16 H33 O5 P' _chem_comp.formula_weight 336.404 _chem_comp.id 87O _chem_comp.mon_nstd_flag . _chem_comp.name 'phosphono hexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 P 87O doub 56 n n P O3 87O sing 57 n n P O4 87O sing 58 n n P O1 87O sing 59 n n O C15 87O doub 60 n n O1 C15 87O sing 61 n n C15 C14 87O sing 62 n n C14 C13 87O sing 63 n n C13 C12 87O sing 64 n n C12 C11 87O sing 65 n n C11 C10 87O sing 66 n n C10 C9 87O sing 67 n n C9 C8 87O sing 68 n n C8 C7 87O sing 69 n n C7 C6 87O sing 70 n n C6 C5 87O sing 71 n n C5 C4 87O sing 72 n n C4 C3 87O sing 73 n n C3 C2 87O sing 74 n n C2 C1 87O sing 75 n n C1 C 87O sing 76 n n C H1 87O sing 77 n n C H2 87O sing 78 n n C H3 87O sing 79 n n C1 H4 87O sing 80 n n C1 H5 87O sing 81 n n C10 H6 87O sing 82 n n C10 H7 87O sing 83 n n C11 H8 87O sing 84 n n C11 H9 87O sing 85 n n C12 H10 87O sing 86 n n C12 H11 87O sing 87 n n C13 H12 87O sing 88 n n C13 H13 87O sing 89 n n C14 H14 87O sing 90 n n C14 H15 87O sing 91 n n C2 H16 87O sing 92 n n C2 H17 87O sing 93 n n C3 H18 87O sing 94 n n C3 H19 87O sing 95 n n C4 H20 87O sing 96 n n C4 H21 87O sing 97 n n C5 H22 87O sing 98 n n C5 H23 87O sing 99 n n C6 H24 87O sing 100 n n C6 H25 87O sing 101 n n C7 H26 87O sing 102 n n C7 H27 87O sing 103 n n C8 H28 87O sing 104 n n C8 H29 87O sing 105 n n C9 H30 87O sing 106 n n C9 H31 87O sing 107 n n O3 H32 87O sing 108 n n O4 H33 87O sing 109 n n # _atom_sites.entry_id 5XJ7 _atom_sites.fract_transf_matrix[1][1] 0.021634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 78M A 1 301 1 78M 78M . C 2 78M A 1 302 2 78M 78M . D 2 78M A 1 303 3 78M 78M . E 2 78M A 1 304 4 78M 78M . F 2 78M A 1 305 6 78M 78M . G 2 78M A 1 306 7 78M 78M . H 2 78M A 1 307 8 78M 78M . I 3 87O A 1 308 1 87O PPA . J 3 87O A 1 309 2 87O PPA . K 4 K A 1 310 1 K K . L 4 K A 1 311 3 K K . M 5 PO4 A 1 312 1 PO4 PO4 . N 6 HOH A 1 401 62 HOH HOH . N 6 HOH A 2 402 64 HOH HOH . N 6 HOH A 3 403 56 HOH HOH . N 6 HOH A 4 404 21 HOH HOH . N 6 HOH A 5 405 58 HOH HOH . N 6 HOH A 6 406 51 HOH HOH . N 6 HOH A 7 407 5 HOH HOH . N 6 HOH A 8 408 61 HOH HOH . N 6 HOH A 9 409 41 HOH HOH . N 6 HOH A 10 410 49 HOH HOH . N 6 HOH A 11 411 44 HOH HOH . N 6 HOH A 12 412 37 HOH HOH . N 6 HOH A 13 413 9 HOH HOH . N 6 HOH A 14 414 25 HOH HOH . N 6 HOH A 15 415 53 HOH HOH . N 6 HOH A 16 416 23 HOH HOH . N 6 HOH A 17 417 11 HOH HOH . N 6 HOH A 18 418 19 HOH HOH . N 6 HOH A 19 419 14 HOH HOH . N 6 HOH A 20 420 1 HOH HOH . N 6 HOH A 21 421 15 HOH HOH . N 6 HOH A 22 422 20 HOH HOH . N 6 HOH A 23 423 55 HOH HOH . N 6 HOH A 24 424 27 HOH HOH . N 6 HOH A 25 425 38 HOH HOH . N 6 HOH A 26 426 3 HOH HOH . N 6 HOH A 27 427 8 HOH HOH . N 6 HOH A 28 428 63 HOH HOH . N 6 HOH A 29 429 12 HOH HOH . N 6 HOH A 30 430 13 HOH HOH . N 6 HOH A 31 431 18 HOH HOH . N 6 HOH A 32 432 26 HOH HOH . N 6 HOH A 33 433 2 HOH HOH . N 6 HOH A 34 434 57 HOH HOH . N 6 HOH A 35 435 24 HOH HOH . N 6 HOH A 36 436 17 HOH HOH . N 6 HOH A 37 437 28 HOH HOH . N 6 HOH A 38 438 43 HOH HOH . N 6 HOH A 39 439 4 HOH HOH . N 6 HOH A 40 440 16 HOH HOH . N 6 HOH A 41 441 47 HOH HOH . N 6 HOH A 42 442 30 HOH HOH . N 6 HOH A 43 443 60 HOH HOH . N 6 HOH A 44 444 39 HOH HOH . N 6 HOH A 45 445 6 HOH HOH . N 6 HOH A 46 446 40 HOH HOH . N 6 HOH A 47 447 35 HOH HOH . N 6 HOH A 48 448 31 HOH HOH . N 6 HOH A 49 449 48 HOH HOH . N 6 HOH A 50 450 10 HOH HOH . N 6 HOH A 51 451 65 HOH HOH . N 6 HOH A 52 452 46 HOH HOH . N 6 HOH A 53 453 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 87O . . . J 3 -22.868 6.158 -9.477 1 28.46 ? P 87O 309 A 1 HETATM 2 O O1 87O . . . J 3 -23.512 5.306 -8.294 1 40.26 ? O1 87O 309 A 1 HETATM 3 O O2 87O . . . J 3 -23.497 5.759 -10.727 1 24.43 ? O2 87O 309 A 1 HETATM 4 C C 87O . . . J 3 -14.518 2.417 -17.162 1 31.24 ? C 87O 309 A 1 HETATM 5 O O 87O . . . J 3 -24.136 3.693 -6.875 1 27.84 ? O 87O 309 A 1 HETATM 6 C C1 87O . . . J 3 -15.699 2.126 -16.266 1 26.2 ? C1 87O 309 A 1 HETATM 7 C C10 87O . . . J 3 -22.46 -1.109 -10.108 1 32.24 ? C10 87O 309 A 1 HETATM 8 C C11 87O . . . J 3 -23.363 0.09 -10.279 1 42.64 ? C11 87O 309 A 1 HETATM 9 C C12 87O . . . J 3 -23.815 0.629 -8.954 1 48.47 ? C12 87O 309 A 1 HETATM 10 C C13 87O . . . J 3 -22.914 1.717 -8.466 1 25.06 ? C13 87O 309 A 1 HETATM 11 C C14 87O . . . J 3 -23.325 3.051 -9.042 1 29.34 ? C14 87O 309 A 1 HETATM 12 C C15 87O . . . J 3 -23.71 4.007 -7.96 1 37.06 ? C15 87O 309 A 1 HETATM 13 C C2 87O . . . J 3 -15.891 0.662 -15.943 1 30.94 ? C2 87O 309 A 1 HETATM 14 C C3 87O . . . J 3 -16.922 0.388 -14.861 1 27.22 ? C3 87O 309 A 1 HETATM 15 C C4 87O . . . J 3 -16.885 -1.055 -14.394 1 29.11 ? C4 87O 309 A 1 HETATM 16 C C5 87O . . . J 3 -17.753 -1.377 -13.201 1 33.66 ? C5 87O 309 A 1 HETATM 17 C C6 87O . . . J 3 -19.229 -1.173 -13.424 1 27.39 ? C6 87O 309 A 1 HETATM 18 C C7 87O . . . J 3 -20.057 -1.574 -12.23 1 29.04 ? C7 87O 309 A 1 HETATM 19 C C8 87O . . . J 3 -21.528 -1.306 -12.422 1 33.43 ? C8 87O 309 A 1 HETATM 20 C C9 87O . . . J 3 -22.382 -1.924 -11.357 1 34.13 ? C9 87O 309 A 1 HETATM 21 O O3 87O . . . J 3 -23.137 7.626 -9.028 1 23.8 ? O3 87O 309 A 1 HETATM 22 O O4 87O . . . J 3 -21.368 5.857 -9.392 1 26.44 ? O4 87O 309 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #