data_5XJ8 # _model_server_result.job_id P4SqHsFhu_Dpb10mwPBIzw _model_server_result.datetime_utc '2024-11-07 20:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5XJ8 # _exptl.entry_id 5XJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.59 _cell.angle_gamma 90 _cell.entry_id 5XJ8 _cell.length_a 123.888 _cell.length_b 40.895 _cell.length_c 91.705 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 333 n n P O2 PO4 sing 334 n n P O3 PO4 sing 335 n n P O4 PO4 sing 336 n n # _atom_sites.entry_id 5XJ8 _atom_sites.fract_transf_matrix[1][1] 0.008072 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00079 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 1 PO4 PO4 . D 2 PO4 A 1 302 3 PO4 PO4 . E 2 PO4 B 1 301 2 PO4 PO4 . F 3 NKO B 1 302 1 NKO PPA . G 4 HOH A 1 401 16 HOH HOH . G 4 HOH A 2 402 1 HOH HOH . G 4 HOH A 3 403 3 HOH HOH . G 4 HOH A 4 404 2 HOH HOH . G 4 HOH A 5 405 4 HOH HOH . G 4 HOH A 6 406 17 HOH HOH . G 4 HOH A 7 407 5 HOH HOH . H 4 HOH B 1 401 10 HOH HOH . H 4 HOH B 2 402 7 HOH HOH . H 4 HOH B 3 403 6 HOH HOH . H 4 HOH B 4 404 12 HOH HOH . H 4 HOH B 5 405 8 HOH HOH . H 4 HOH B 6 406 9 HOH HOH . H 4 HOH B 7 407 14 HOH HOH . H 4 HOH B 8 408 13 HOH HOH . H 4 HOH B 9 409 15 HOH HOH . H 4 HOH B 10 410 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 -21.454 10.11 11.688 1 77.83 ? P PO4 302 A 1 HETATM 2 O O1 PO4 . . . D 2 -22.478 10.801 10.817 1 62.9 ? O1 PO4 302 A 1 HETATM 3 O O2 PO4 . . . D 2 -20.161 9.952 10.923 1 82.46 ? O2 PO4 302 A 1 HETATM 4 O O3 PO4 . . . D 2 -21.975 8.75 12.086 1 50.76 ? O3 PO4 302 A 1 HETATM 5 O O4 PO4 . . . D 2 -21.201 10.937 12.926 1 47.84 ? O4 PO4 302 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #