data_5XJ9
#
_model_server_result.job_id            prd-GrpcXID3G5DV9EuJow 
_model_server_result.datetime_utc      '2024-11-07 22:52:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xj9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":308}' 
#
_entry.id    5XJ9 
#
_exptl.entry_id    5XJ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              314.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XJ9 
_cell.length_a            58.339 
_cell.length_b            97.986 
_cell.length_c            83.308 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XJ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
#
_chem_comp.formula           'C18 H34 O4' 
_chem_comp.formula_weight    314.46 
_chem_comp.id                78M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '7.8 MONOACYLGLYCEROL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O21 C20 78M sing 1 n n 
C20 C18 78M sing 2 n n 
C18 O19 78M sing 3 n n 
C18 C17 78M sing 4 n n 
C17 O2 78M sing 5 n n 
O2 C1 78M sing 6 n n 
C1 O1 78M doub 7 n n 
C1 C2 78M sing 8 n n 
C2 C3 78M sing 9 n n 
C3 C4 78M sing 10 n n 
C4 C5 78M sing 11 n n 
C5 C6 78M sing 12 n n 
C6 C7 78M sing 13 n n 
C7 C8 78M doub 14 z n 
C8 C9 78M sing 15 n n 
C9 C10 78M sing 16 n n 
C10 C11 78M sing 17 n n 
C11 C12 78M sing 18 n n 
C12 C13 78M sing 19 n n 
C15 C14 78M sing 20 n n 
C13 C14 78M sing 21 n n 
O21 H21 78M sing 22 n n 
C20 H201 78M sing 23 n n 
C20 H202 78M sing 24 n n 
C18 H18 78M sing 25 n n 
O19 H19 78M sing 26 n n 
C17 H171 78M sing 27 n n 
C17 H172 78M sing 28 n n 
C2 H21C 78M sing 29 n n 
C2 H22C 78M sing 30 n n 
C3 H31C 78M sing 31 n n 
C3 H32C 78M sing 32 n n 
C4 H41C 78M sing 33 n n 
C4 H42C 78M sing 34 n n 
C5 H51C 78M sing 35 n n 
C5 H52C 78M sing 36 n n 
C6 H61C 78M sing 37 n n 
C6 H62C 78M sing 38 n n 
C7 H7 78M sing 39 n n 
C8 H8 78M sing 40 n n 
C9 H91C 78M sing 41 n n 
C9 H92C 78M sing 42 n n 
C10 H101 78M sing 43 n n 
C10 H102 78M sing 44 n n 
C11 H111 78M sing 45 n n 
C11 H112 78M sing 46 n n 
C12 H121 78M sing 47 n n 
C12 H122 78M sing 48 n n 
C13 H131 78M sing 49 n n 
C13 H132 78M sing 50 n n 
C15 H151 78M sing 51 n n 
C15 H152 78M sing 52 n n 
C15 H153 78M sing 53 n n 
C14 H141 78M sing 54 n n 
C14 H142 78M sing 55 n n 
#
_atom_sites.entry_id                     5XJ9 
_atom_sites.fract_transf_matrix[1][1]    0.017141 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 301 1 PO4 PO4 . 
C 2 PO4 A 1 302 2 PO4 PO4 . 
D 2 PO4 A 1 303 3 PO4 PO4 . 
E 2 PO4 A 1 304 4 PO4 PO4 . 
F 2 PO4 A 1 305 5 PO4 PO4 . 
G 3 78M A 1 306 2 78M 78M . 
H 3 78M A 1 307 3 78M 78M . 
I 3 78M A 1 308 4 78M 78M . 
J 3 78M A 1 309 5 78M 78M . 
K 3 78M A 1 310 6 78M 78M . 
L 3 78M A 1 311 7 78M 78M . 
M 3 78M A 1 312 8 78M 78M . 
N 3 78M A 1 313 9 78M 78M . 
O 4 HOH A 1 401 72 HOH HOH . 
O 4 HOH A 2 402 52 HOH HOH . 
O 4 HOH A 3 403 109 HOH HOH . 
O 4 HOH A 4 404 90 HOH HOH . 
O 4 HOH A 5 405 42 HOH HOH . 
O 4 HOH A 6 406 115 HOH HOH . 
O 4 HOH A 7 407 45 HOH HOH . 
O 4 HOH A 8 408 35 HOH HOH . 
O 4 HOH A 9 409 47 HOH HOH . 
O 4 HOH A 10 410 50 HOH HOH . 
O 4 HOH A 11 411 116 HOH HOH . 
O 4 HOH A 12 412 64 HOH HOH . 
O 4 HOH A 13 413 9 HOH HOH . 
O 4 HOH A 14 414 3 HOH HOH . 
O 4 HOH A 15 415 113 HOH HOH . 
O 4 HOH A 16 416 44 HOH HOH . 
O 4 HOH A 17 417 32 HOH HOH . 
O 4 HOH A 18 418 91 HOH HOH . 
O 4 HOH A 19 419 11 HOH HOH . 
O 4 HOH A 20 420 43 HOH HOH . 
O 4 HOH A 21 421 46 HOH HOH . 
O 4 HOH A 22 422 25 HOH HOH . 
O 4 HOH A 23 423 59 HOH HOH . 
O 4 HOH A 24 424 19 HOH HOH . 
O 4 HOH A 25 425 67 HOH HOH . 
O 4 HOH A 26 426 77 HOH HOH . 
O 4 HOH A 27 427 30 HOH HOH . 
O 4 HOH A 28 428 87 HOH HOH . 
O 4 HOH A 29 429 13 HOH HOH . 
O 4 HOH A 30 430 6 HOH HOH . 
O 4 HOH A 31 431 37 HOH HOH . 
O 4 HOH A 32 432 2 HOH HOH . 
O 4 HOH A 33 433 31 HOH HOH . 
O 4 HOH A 34 434 10 HOH HOH . 
O 4 HOH A 35 435 4 HOH HOH . 
O 4 HOH A 36 436 65 HOH HOH . 
O 4 HOH A 37 437 95 HOH HOH . 
O 4 HOH A 38 438 16 HOH HOH . 
O 4 HOH A 39 439 102 HOH HOH . 
O 4 HOH A 40 440 7 HOH HOH . 
O 4 HOH A 41 441 17 HOH HOH . 
O 4 HOH A 42 442 28 HOH HOH . 
O 4 HOH A 43 443 8 HOH HOH . 
O 4 HOH A 44 444 71 HOH HOH . 
O 4 HOH A 45 445 75 HOH HOH . 
O 4 HOH A 46 446 18 HOH HOH . 
O 4 HOH A 47 447 74 HOH HOH . 
O 4 HOH A 48 448 49 HOH HOH . 
O 4 HOH A 49 449 14 HOH HOH . 
O 4 HOH A 50 450 15 HOH HOH . 
O 4 HOH A 51 451 38 HOH HOH . 
O 4 HOH A 52 452 29 HOH HOH . 
O 4 HOH A 53 453 93 HOH HOH . 
O 4 HOH A 54 454 5 HOH HOH . 
O 4 HOH A 55 455 33 HOH HOH . 
O 4 HOH A 56 456 1 HOH HOH . 
O 4 HOH A 57 457 12 HOH HOH . 
O 4 HOH A 58 458 73 HOH HOH . 
O 4 HOH A 59 459 83 HOH HOH . 
O 4 HOH A 60 460 96 HOH HOH . 
O 4 HOH A 61 461 110 HOH HOH . 
O 4 HOH A 62 462 26 HOH HOH . 
O 4 HOH A 63 463 84 HOH HOH . 
O 4 HOH A 64 464 81 HOH HOH . 
O 4 HOH A 65 465 20 HOH HOH . 
O 4 HOH A 66 466 60 HOH HOH . 
O 4 HOH A 67 467 39 HOH HOH . 
O 4 HOH A 68 468 36 HOH HOH . 
O 4 HOH A 69 469 89 HOH HOH . 
O 4 HOH A 70 470 21 HOH HOH . 
O 4 HOH A 71 471 24 HOH HOH . 
O 4 HOH A 72 472 48 HOH HOH . 
O 4 HOH A 73 473 70 HOH HOH . 
O 4 HOH A 74 474 100 HOH HOH . 
O 4 HOH A 75 475 54 HOH HOH . 
O 4 HOH A 76 476 111 HOH HOH . 
O 4 HOH A 77 477 41 HOH HOH . 
O 4 HOH A 78 478 51 HOH HOH . 
O 4 HOH A 79 479 22 HOH HOH . 
O 4 HOH A 80 480 68 HOH HOH . 
O 4 HOH A 81 481 112 HOH HOH . 
O 4 HOH A 82 482 53 HOH HOH . 
O 4 HOH A 83 483 99 HOH HOH . 
O 4 HOH A 84 484 23 HOH HOH . 
O 4 HOH A 85 485 94 HOH HOH . 
O 4 HOH A 86 486 34 HOH HOH . 
O 4 HOH A 87 487 76 HOH HOH . 
O 4 HOH A 88 488 79 HOH HOH . 
O 4 HOH A 89 489 85 HOH HOH . 
O 4 HOH A 90 490 58 HOH HOH . 
O 4 HOH A 91 491 114 HOH HOH . 
O 4 HOH A 92 492 78 HOH HOH . 
O 4 HOH A 93 493 61 HOH HOH . 
O 4 HOH A 94 494 27 HOH HOH . 
O 4 HOH A 95 495 101 HOH HOH . 
O 4 HOH A 96 496 92 HOH HOH . 
O 4 HOH A 97 497 57 HOH HOH . 
O 4 HOH A 98 498 104 HOH HOH . 
O 4 HOH A 99 499 80 HOH HOH . 
O 4 HOH A 100 500 88 HOH HOH . 
O 4 HOH A 101 501 103 HOH HOH . 
O 4 HOH A 102 502 86 HOH HOH . 
O 4 HOH A 103 503 69 HOH HOH . 
O 4 HOH A 104 504 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O21 78M . . . I 3 10.063 9.577 -13.32 1 35.89 ? O21 78M 308 A 1 
HETATM 2 C C20 78M . . . I 3 10.445 9.399 -11.967 1 29.04 ? C20 78M 308 A 1 
HETATM 3 C C18 78M . . . I 3 11.035 10.691 -11.457 1 25.43 ? C18 78M 308 A 1 
HETATM 4 O O19 78M . . . I 3 12.168 11.037 -12.261 1 29.13 ? O19 78M 308 A 1 
HETATM 5 C C17 78M . . . I 3 11.464 10.608 -10.019 1 31 ? C17 78M 308 A 1 
HETATM 6 O O2 78M . . . I 3 10.438 9.871 -9.317 1 24.28 ? O2 78M 308 A 1 
HETATM 7 C C1 78M . . . I 3 9.64 10.58 -8.524 1 30.36 ? C1 78M 308 A 1 
HETATM 8 O O1 78M . . . I 3 9.682 11.775 -8.444 1 43.78 ? O1 78M 308 A 1 
HETATM 9 C C2 78M . . . I 3 8.711 9.695 -7.75 1 27.7 ? C2 78M 308 A 1 
HETATM 10 C C3 78M . . . I 3 8.858 9.856 -6.245 1 27.84 ? C3 78M 308 A 1 
HETATM 11 C C4 78M . . . I 3 8.032 10.99 -5.66 1 33.77 ? C4 78M 308 A 1 
HETATM 12 C C5 78M . . . I 3 8.736 11.707 -4.518 1 38.36 ? C5 78M 308 A 1 
HETATM 13 C C6 78M . . . I 3 7.844 12.5 -3.575 1 36.29 ? C6 78M 308 A 1 
HETATM 14 C C7 78M . . . I 3 7.74 11.832 -2.24 1 36.3 ? C7 78M 308 A 1 
HETATM 15 C C8 78M . . . I 3 8.129 12.323 -1.08 1 40.18 ? C8 78M 308 A 1 
HETATM 16 C C9 78M . . . I 3 8.744 13.662 -0.835 1 32.09 ? C9 78M 308 A 1 
HETATM 17 C C10 78M . . . I 3 8.35 14.187 0.54 1 28.39 ? C10 78M 308 A 1 
HETATM 18 C C11 78M . . . I 3 6.845 14.129 0.776 1 32.86 ? C11 78M 308 A 1 
HETATM 19 C C12 78M . . . I 3 6.454 14.183 2.239 1 28.72 ? C12 78M 308 A 1 
HETATM 20 C C13 78M . . . I 3 5.096 13.58 2.537 1 30.98 ? C13 78M 308 A 1 
HETATM 21 C C15 78M . . . I 3 5.248 14.565 4.832 1 24.3 ? C15 78M 308 A 1 
HETATM 22 C C14 78M . . . I 3 4.883 13.358 4.025 1 27.56 ? C14 78M 308 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#