data_5XJD # _model_server_result.job_id PFudQ1UvTK9SGqJN6GQrXg _model_server_result.datetime_utc '2025-02-05 06:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5XJD # _exptl.entry_id 5XJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-phenyl-2-pyrrol-1-yl-ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XJD _cell.length_a 74.5 _cell.length_b 74.5 _cell.length_c 252.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H11 N O2' _chem_comp.formula_weight 201.221 _chem_comp.id 87L _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-phenyl-2-pyrrol-1-yl-ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAK 87L doub 1 n y CAG CAF 87L sing 2 n y CAK N 87L sing 3 n y CAF CAJ 87L doub 4 n y N CAJ 87L sing 5 n y N CA 87L sing 6 n n CA C 87L sing 7 n n CA CAM 87L sing 8 n n C OXT 87L doub 9 n n C O 87L sing 10 n n CAI CAM 87L doub 11 n y CAI CAE 87L sing 12 n y CAM CAH 87L sing 13 n y CAE CAC 87L doub 14 n y CAH CAD 87L doub 15 n y CAC CAD 87L sing 16 n y CAH H1 87L sing 17 n n CAD H2 87L sing 18 n n CAC H3 87L sing 19 n n CAE H4 87L sing 20 n n CAI H5 87L sing 21 n n CA H6 87L sing 22 n n O H7 87L sing 23 n n CAJ H8 87L sing 24 n n CAF H9 87L sing 25 n n CAG H10 87L sing 26 n n CAK H11 87L sing 27 n n # _atom_sites.entry_id 5XJD _atom_sites.fract_transf_matrix[1][1] 0.013423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 87L B 1 501 1 87L DRG . D 3 HOH A 1 501 52 HOH HOH . D 3 HOH A 2 502 143 HOH HOH . D 3 HOH A 3 503 142 HOH HOH . D 3 HOH A 4 504 145 HOH HOH . D 3 HOH A 5 505 17 HOH HOH . D 3 HOH A 6 506 37 HOH HOH . D 3 HOH A 7 507 54 HOH HOH . D 3 HOH A 8 508 27 HOH HOH . D 3 HOH A 9 509 58 HOH HOH . D 3 HOH A 10 510 11 HOH HOH . D 3 HOH A 11 511 65 HOH HOH . D 3 HOH A 12 512 141 HOH HOH . D 3 HOH A 13 513 50 HOH HOH . D 3 HOH A 14 514 74 HOH HOH . D 3 HOH A 15 515 38 HOH HOH . D 3 HOH A 16 516 20 HOH HOH . D 3 HOH A 17 517 64 HOH HOH . D 3 HOH A 18 518 106 HOH HOH . D 3 HOH A 19 519 76 HOH HOH . D 3 HOH A 20 520 93 HOH HOH . D 3 HOH A 21 521 30 HOH HOH . D 3 HOH A 22 522 55 HOH HOH . D 3 HOH A 23 523 22 HOH HOH . D 3 HOH A 24 524 5 HOH HOH . D 3 HOH A 25 525 23 HOH HOH . D 3 HOH A 26 526 77 HOH HOH . D 3 HOH A 27 527 28 HOH HOH . D 3 HOH A 28 528 134 HOH HOH . D 3 HOH A 29 529 144 HOH HOH . D 3 HOH A 30 530 34 HOH HOH . D 3 HOH A 31 531 2 HOH HOH . D 3 HOH A 32 532 60 HOH HOH . D 3 HOH A 33 533 75 HOH HOH . D 3 HOH A 34 534 73 HOH HOH . D 3 HOH A 35 535 146 HOH HOH . D 3 HOH A 36 536 140 HOH HOH . D 3 HOH A 37 537 14 HOH HOH . D 3 HOH A 38 538 46 HOH HOH . D 3 HOH A 39 539 113 HOH HOH . D 3 HOH A 40 540 80 HOH HOH . D 3 HOH A 41 541 72 HOH HOH . D 3 HOH A 42 542 131 HOH HOH . D 3 HOH A 43 543 39 HOH HOH . D 3 HOH A 44 544 112 HOH HOH . D 3 HOH A 45 545 82 HOH HOH . D 3 HOH A 46 546 71 HOH HOH . E 3 HOH B 1 601 101 HOH HOH . E 3 HOH B 2 602 29 HOH HOH . E 3 HOH B 3 603 10 HOH HOH . E 3 HOH B 4 604 12 HOH HOH . E 3 HOH B 5 605 9 HOH HOH . E 3 HOH B 6 606 53 HOH HOH . E 3 HOH B 7 607 89 HOH HOH . E 3 HOH B 8 608 66 HOH HOH . E 3 HOH B 9 609 32 HOH HOH . E 3 HOH B 10 610 26 HOH HOH . E 3 HOH B 11 611 4 HOH HOH . E 3 HOH B 12 612 63 HOH HOH . E 3 HOH B 13 613 119 HOH HOH . E 3 HOH B 14 614 1 HOH HOH . E 3 HOH B 15 615 109 HOH HOH . E 3 HOH B 16 616 35 HOH HOH . E 3 HOH B 17 617 15 HOH HOH . E 3 HOH B 18 618 40 HOH HOH . E 3 HOH B 19 619 7 HOH HOH . E 3 HOH B 20 620 100 HOH HOH . E 3 HOH B 21 621 3 HOH HOH . E 3 HOH B 22 622 33 HOH HOH . E 3 HOH B 23 623 19 HOH HOH . E 3 HOH B 24 624 103 HOH HOH . E 3 HOH B 25 625 129 HOH HOH . E 3 HOH B 26 626 47 HOH HOH . E 3 HOH B 27 627 79 HOH HOH . E 3 HOH B 28 628 102 HOH HOH . E 3 HOH B 29 629 48 HOH HOH . E 3 HOH B 30 630 111 HOH HOH . E 3 HOH B 31 631 104 HOH HOH . E 3 HOH B 32 632 116 HOH HOH . E 3 HOH B 33 633 108 HOH HOH . E 3 HOH B 34 634 135 HOH HOH . E 3 HOH B 35 635 18 HOH HOH . E 3 HOH B 36 636 45 HOH HOH . E 3 HOH B 37 637 31 HOH HOH . E 3 HOH B 38 638 42 HOH HOH . E 3 HOH B 39 639 81 HOH HOH . E 3 HOH B 40 640 85 HOH HOH . E 3 HOH B 41 641 70 HOH HOH . E 3 HOH B 42 642 16 HOH HOH . E 3 HOH B 43 643 78 HOH HOH . E 3 HOH B 44 644 68 HOH HOH . E 3 HOH B 45 645 6 HOH HOH . E 3 HOH B 46 646 92 HOH HOH . E 3 HOH B 47 647 88 HOH HOH . E 3 HOH B 48 648 44 HOH HOH . E 3 HOH B 49 649 56 HOH HOH . E 3 HOH B 50 650 69 HOH HOH . E 3 HOH B 51 651 62 HOH HOH . E 3 HOH B 52 652 127 HOH HOH . E 3 HOH B 53 653 13 HOH HOH . E 3 HOH B 54 654 67 HOH HOH . E 3 HOH B 55 655 107 HOH HOH . E 3 HOH B 56 656 122 HOH HOH . E 3 HOH B 57 657 97 HOH HOH . E 3 HOH B 58 658 51 HOH HOH . E 3 HOH B 59 659 84 HOH HOH . E 3 HOH B 60 660 8 HOH HOH . E 3 HOH B 61 661 110 HOH HOH . E 3 HOH B 62 662 115 HOH HOH . E 3 HOH B 63 663 36 HOH HOH . E 3 HOH B 64 664 61 HOH HOH . E 3 HOH B 65 665 41 HOH HOH . E 3 HOH B 66 666 21 HOH HOH . E 3 HOH B 67 667 126 HOH HOH . E 3 HOH B 68 668 123 HOH HOH . E 3 HOH B 69 669 124 HOH HOH . E 3 HOH B 70 670 99 HOH HOH . E 3 HOH B 71 671 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAH 87L . . . C 2 -66.258 -33.293 -29.366 1 51.63 ? CAH 87L 501 B 1 HETATM 2 C CAD 87L . . . C 2 -65.389 -33.434 -28.289 1 52.64 ? CAD 87L 501 B 1 HETATM 3 C CAC 87L . . . C 2 -64.361 -34.367 -28.343 1 53.73 ? CAC 87L 501 B 1 HETATM 4 C CAE 87L . . . C 2 -64.201 -35.161 -29.473 1 56.78 ? CAE 87L 501 B 1 HETATM 5 C CAI 87L . . . C 2 -65.069 -35.02 -30.55 1 56.24 ? CAI 87L 501 B 1 HETATM 6 C CAM 87L . . . C 2 -66.097 -34.087 -30.496 1 57.09 ? CAM 87L 501 B 1 HETATM 7 C CA 87L . . . C 2 -66.966 -33.946 -31.572 1 53.53 ? CA 87L 501 B 1 HETATM 8 C C 87L . . . C 2 -68.24 -33.235 -31.112 1 56.7 ? C 87L 501 B 1 HETATM 9 O OXT 87L . . . C 2 -69.255 -33.944 -30.941 1 64.33 ? OXT 87L 501 B 1 HETATM 10 O O 87L . . . C 2 -68.17 -31.999 -30.94 1 64.76 ? O 87L 501 B 1 HETATM 11 N N 87L . . . C 2 -66.311 -33.15 -32.634 1 51.97 ? N 87L 501 B 1 HETATM 12 C CAJ 87L . . . C 2 -65.471 -32.137 -32.444 1 52.08 ? CAJ 87L 501 B 1 HETATM 13 C CAF 87L . . . C 2 -65.101 -31.683 -33.638 1 51.12 ? CAF 87L 501 B 1 HETATM 14 C CAG 87L . . . C 2 -65.712 -32.416 -34.565 1 49.44 ? CAG 87L 501 B 1 HETATM 15 C CAK 87L . . . C 2 -66.461 -33.323 -33.944 1 48.24 ? CAK 87L 501 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 15 #