data_5XJE # _model_server_result.job_id xrbx9gMWAN8yCtbc2VBsKw _model_server_result.datetime_utc '2024-12-01 01:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1010}' # _entry.id 5XJE # _exptl.entry_id 5XJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XJE _cell.length_a 77.55 _cell.length_b 77.55 _cell.length_c 351.89 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 3 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 3 8 7 NAG MAN C1 O1 . O2 HO2 . sing 8 ? 3 9 1 FUC NAG C1 O1 . O6 HO6 . sing 9 ? 4 2 1 FUC NAG C1 O1 . O6 HO6 . sing 10 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG A 1001 NAG 3 n D NAG 2 D 2 NAG A 1002 NAG 3 n D BMA 3 D 3 BMA A 1003 BMA 3 n D MAN 4 D 4 MAN A 1006 MAN 3 n D NAG 5 D 5 NAG A 1007 NAG 3 n D GAL 6 D 6 GAL A 1008 GAL 3 n D MAN 7 D 7 MAN A 1004 MAN 3 n D NAG 8 D 8 NAG A 1005 NAG 3 n D FUC 9 D 9 FUC A 1009 FUC 3 n E NAG 1 E 1 NAG B 1001 NAG 3 n E NAG 2 E 2 NAG B 1002 NAG 3 n E BMA 3 E 3 BMA B 1003 BMA 3 n E MAN 4 E 4 MAN B 1006 MAN 3 n E NAG 5 E 5 NAG B 1007 NAG 3 n E GAL 6 E 6 GAL B 1008 GAL 3 n E MAN 7 E 7 MAN B 1004 MAN 3 n E NAG 8 E 8 NAG B 1005 NAG 3 n E FUC 9 E 9 FUC B 1009 FUC 4 n F NAG 1 F 1 NAG C 1001 NAG 4 n F FUC 2 F 2 FUC C 1002 FUC 5 n G NAG 1 G 1 NAG C 1003 NAG 5 n G NAG 2 G 2 NAG C 1004 NAG 5 n G BMA 3 G 3 BMA C 1005 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 37 A CYS 261 1_555 A SG CYS 97 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 143 A CYS 367 1_555 A SG CYS 201 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 37 B CYS 261 1_555 B SG CYS 97 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 B SG CYS 143 B CYS 367 1_555 B SG CYS 201 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 C SG CYS 27 C CYS 29 1_555 C SG CYS 69 C CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf6 C SG CYS 108 C CYS 110 1_555 C SG CYS 152 C CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A ND2 ASN 73 A ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 B ND2 ASN 73 B ASN 297 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 C ND2 ASN 43 C ASN 45 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 C ND2 ASN 160 C ASN 162 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale6 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale7 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale8 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale9 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale10 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale11 D O4 NAG . D NAG 5 1_555 D C1 GAL . D GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale12 D O2 MAN . D MAN 7 1_555 D C1 NAG . D NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale14 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale15 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale16 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale17 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale18 E O2 MAN . E MAN 4 1_555 E C1 NAG . E NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale19 E O4 NAG . E NAG 5 1_555 E C1 GAL . E GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale20 E O2 MAN . E MAN 7 1_555 E C1 NAG . E NAG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale21 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale22 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale23 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XJE _atom_sites.fract_transf_matrix[1][1] 0.012895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 CL A 1 1010 1010 CL CL . I 7 HOH A 1 1101 1101 HOH HOH . I 7 HOH A 2 1102 1126 HOH HOH . I 7 HOH A 3 1103 1102 HOH HOH . I 7 HOH A 4 1104 1103 HOH HOH . I 7 HOH A 5 1105 1104 HOH HOH . I 7 HOH A 6 1106 1106 HOH HOH . I 7 HOH A 7 1107 1111 HOH HOH . I 7 HOH A 8 1108 1142 HOH HOH . I 7 HOH A 9 1109 1124 HOH HOH . I 7 HOH A 10 1110 1108 HOH HOH . I 7 HOH A 11 1111 1127 HOH HOH . I 7 HOH A 12 1112 1105 HOH HOH . I 7 HOH A 13 1113 1107 HOH HOH . I 7 HOH A 14 1114 1133 HOH HOH . I 7 HOH A 15 1115 1118 HOH HOH . I 7 HOH A 16 1116 1132 HOH HOH . I 7 HOH A 17 1117 1110 HOH HOH . I 7 HOH A 18 1118 1125 HOH HOH . I 7 HOH A 19 1119 1124 HOH HOH . I 7 HOH A 20 1120 1129 HOH HOH . I 7 HOH A 21 1121 1120 HOH HOH . I 7 HOH A 22 1122 1143 HOH HOH . I 7 HOH A 23 1123 1109 HOH HOH . I 7 HOH A 24 1124 1128 HOH HOH . I 7 HOH A 25 1125 1144 HOH HOH . I 7 HOH A 26 1126 1122 HOH HOH . I 7 HOH A 27 1127 1121 HOH HOH . I 7 HOH A 28 1128 1119 HOH HOH . I 7 HOH A 29 1129 1141 HOH HOH . I 7 HOH A 30 1130 1117 HOH HOH . I 7 HOH A 31 1131 1115 HOH HOH . I 7 HOH A 32 1132 1116 HOH HOH . I 7 HOH A 33 1133 1112 HOH HOH . I 7 HOH A 34 1134 1140 HOH HOH . I 7 HOH A 35 1135 1139 HOH HOH . I 7 HOH A 36 1136 1113 HOH HOH . I 7 HOH A 37 1137 1114 HOH HOH . J 7 HOH B 1 1101 1101 HOH HOH . J 7 HOH B 2 1102 1102 HOH HOH . J 7 HOH B 3 1103 1151 HOH HOH . J 7 HOH B 4 1104 1139 HOH HOH . J 7 HOH B 5 1105 1104 HOH HOH . J 7 HOH B 6 1106 1108 HOH HOH . J 7 HOH B 7 1107 1103 HOH HOH . J 7 HOH B 8 1108 1105 HOH HOH . J 7 HOH B 9 1109 1106 HOH HOH . J 7 HOH B 10 1110 1110 HOH HOH . J 7 HOH B 11 1111 1130 HOH HOH . J 7 HOH B 12 1112 1152 HOH HOH . J 7 HOH B 13 1113 1153 HOH HOH . J 7 HOH B 14 1114 1109 HOH HOH . J 7 HOH B 15 1115 1136 HOH HOH . J 7 HOH B 16 1116 1107 HOH HOH . J 7 HOH B 17 1117 1134 HOH HOH . J 7 HOH B 18 1118 1149 HOH HOH . J 7 HOH B 19 1119 1137 HOH HOH . J 7 HOH B 20 1120 1147 HOH HOH . J 7 HOH B 21 1121 1141 HOH HOH . J 7 HOH B 22 1122 1148 HOH HOH . J 7 HOH B 23 1123 1122 HOH HOH . J 7 HOH B 24 1124 1135 HOH HOH . J 7 HOH B 25 1125 1112 HOH HOH . J 7 HOH B 26 1126 1150 HOH HOH . J 7 HOH B 27 1127 1116 HOH HOH . J 7 HOH B 28 1128 1119 HOH HOH . J 7 HOH B 29 1129 1114 HOH HOH . J 7 HOH B 30 1130 1113 HOH HOH . J 7 HOH B 31 1131 1138 HOH HOH . J 7 HOH B 32 1132 1142 HOH HOH . J 7 HOH B 33 1133 1111 HOH HOH . J 7 HOH B 34 1134 1137 HOH HOH . J 7 HOH B 35 1135 1145 HOH HOH . J 7 HOH B 36 1136 1143 HOH HOH . J 7 HOH B 37 1137 1123 HOH HOH . J 7 HOH B 38 1138 1117 HOH HOH . J 7 HOH B 39 1139 1146 HOH HOH . J 7 HOH B 40 1140 1121 HOH HOH . J 7 HOH B 41 1141 1118 HOH HOH . J 7 HOH B 42 1142 1131 HOH HOH . J 7 HOH B 43 1143 1115 HOH HOH . J 7 HOH B 44 1144 1144 HOH HOH . J 7 HOH B 45 1145 1123 HOH HOH . J 7 HOH B 46 1146 1140 HOH HOH . J 7 HOH B 47 1147 1135 HOH HOH . J 7 HOH B 48 1148 1138 HOH HOH . J 7 HOH B 49 1149 1126 HOH HOH . J 7 HOH B 50 1150 1120 HOH HOH . J 7 HOH B 51 1151 1154 HOH HOH . J 7 HOH B 52 1152 1127 HOH HOH . J 7 HOH B 53 1153 1125 HOH HOH . J 7 HOH B 54 1154 1128 HOH HOH . J 7 HOH B 55 1155 1129 HOH HOH . J 7 HOH B 56 1156 1134 HOH HOH . J 7 HOH B 57 1157 1131 HOH HOH . J 7 HOH B 58 1158 1130 HOH HOH . J 7 HOH B 59 1159 1136 HOH HOH . K 7 HOH C 1 1101 1111 HOH HOH . K 7 HOH C 2 1102 1101 HOH HOH . K 7 HOH C 3 1103 1103 HOH HOH . K 7 HOH C 4 1104 1102 HOH HOH . K 7 HOH C 5 1105 1132 HOH HOH . K 7 HOH C 6 1106 1104 HOH HOH . K 7 HOH C 7 1107 1105 HOH HOH . K 7 HOH C 8 1108 1133 HOH HOH . K 7 HOH C 9 1109 1106 HOH HOH . K 7 HOH C 10 1110 1107 HOH HOH . K 7 HOH C 11 1111 1108 HOH HOH . K 7 HOH C 12 1112 1110 HOH HOH . K 7 HOH C 13 1113 1109 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 5.593 _atom_site.Cartn_y -28.509 _atom_site.Cartn_z -33.664 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 1010 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #