data_5XJG
#
_model_server_result.job_id            SmgEfZtOhMTzdwbv7TRzWg 
_model_server_result.datetime_utc      '2024-11-05 01:18:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xjg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    5XJG 
#
_exptl.entry_id    5XJG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.334 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.68 
_cell.angle_gamma         90 
_cell.entry_id            5XJG 
_cell.length_a            84.082 
_cell.length_b            115.63 
_cell.length_c            84.131 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XJG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H26 N2 O6' 
_chem_comp.formula_weight    282.334 
_chem_comp.id                B3P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 B3P sing 70 n n 
C1 C3 B3P sing 71 n n 
C1 H11 B3P sing 72 n n 
C1 H12 B3P sing 73 n n 
C2 N2 B3P sing 74 n n 
C2 H21 B3P sing 75 n n 
C2 H22 B3P sing 76 n n 
C3 N1 B3P sing 77 n n 
C3 H31 B3P sing 78 n n 
C3 H32 B3P sing 79 n n 
N1 C4 B3P sing 80 n n 
N1 HN1 B3P sing 81 n n 
C4 C5 B3P sing 82 n n 
C4 C6 B3P sing 83 n n 
C4 C7 B3P sing 84 n n 
C5 O4 B3P sing 85 n n 
C5 H51 B3P sing 86 n n 
C5 H52 B3P sing 87 n n 
C6 O5 B3P sing 88 n n 
C6 H61 B3P sing 89 n n 
C6 H62 B3P sing 90 n n 
C7 O6 B3P sing 91 n n 
C7 H71 B3P sing 92 n n 
C7 H72 B3P sing 93 n n 
N2 C8 B3P sing 94 n n 
N2 HN2 B3P sing 95 n n 
C8 C9 B3P sing 96 n n 
C8 C10 B3P sing 97 n n 
C8 C11 B3P sing 98 n n 
C9 O1 B3P sing 99 n n 
C9 H91 B3P sing 100 n n 
C9 H92 B3P sing 101 n n 
C10 O2 B3P sing 102 n n 
C10 H101 B3P sing 103 n n 
C10 H102 B3P sing 104 n n 
C11 O3 B3P sing 105 n n 
C11 H111 B3P sing 106 n n 
C11 H112 B3P sing 107 n n 
O1 HO1 B3P sing 108 n n 
O2 HO2 B3P sing 109 n n 
O3 HO3 B3P sing 110 n n 
O4 HO4 B3P sing 111 n n 
O5 HO5 B3P sing 112 n n 
O6 HO6 B3P sing 113 n n 
#
_atom_sites.entry_id                     5XJG 
_atom_sites.fract_transf_matrix[1][1]    0.011893 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005465 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013081 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PE5 A 1 601 1 PE5 PE5 . 
F 4 B3P A 1 602 1 B3P B3P . 
G 3 PE5 C 1 601 1 PE5 PE5 . 
H 5 HOH A 1 701 128 HOH HOH . 
H 5 HOH A 2 702 154 HOH HOH . 
H 5 HOH A 3 703 166 HOH HOH . 
H 5 HOH A 4 704 66 HOH HOH . 
H 5 HOH A 5 705 55 HOH HOH . 
H 5 HOH A 6 706 48 HOH HOH . 
H 5 HOH A 7 707 139 HOH HOH . 
H 5 HOH A 8 708 126 HOH HOH . 
H 5 HOH A 9 709 117 HOH HOH . 
H 5 HOH A 10 710 45 HOH HOH . 
H 5 HOH A 11 711 16 HOH HOH . 
H 5 HOH A 12 712 84 HOH HOH . 
H 5 HOH A 13 713 42 HOH HOH . 
H 5 HOH A 14 714 22 HOH HOH . 
H 5 HOH A 15 715 34 HOH HOH . 
H 5 HOH A 16 716 54 HOH HOH . 
H 5 HOH A 17 717 75 HOH HOH . 
H 5 HOH A 18 718 29 HOH HOH . 
H 5 HOH A 19 719 50 HOH HOH . 
H 5 HOH A 20 720 157 HOH HOH . 
H 5 HOH A 21 721 21 HOH HOH . 
H 5 HOH A 22 722 23 HOH HOH . 
H 5 HOH A 23 723 165 HOH HOH . 
H 5 HOH A 24 724 161 HOH HOH . 
H 5 HOH A 25 725 17 HOH HOH . 
H 5 HOH A 26 726 159 HOH HOH . 
H 5 HOH A 27 727 97 HOH HOH . 
H 5 HOH A 28 728 38 HOH HOH . 
H 5 HOH A 29 729 10 HOH HOH . 
H 5 HOH A 30 730 7 HOH HOH . 
H 5 HOH A 31 731 80 HOH HOH . 
H 5 HOH A 32 732 78 HOH HOH . 
H 5 HOH A 33 733 83 HOH HOH . 
H 5 HOH A 34 734 12 HOH HOH . 
H 5 HOH A 35 735 158 HOH HOH . 
H 5 HOH A 36 736 92 HOH HOH . 
H 5 HOH A 37 737 101 HOH HOH . 
H 5 HOH A 38 738 112 HOH HOH . 
H 5 HOH A 39 739 160 HOH HOH . 
H 5 HOH A 40 740 68 HOH HOH . 
H 5 HOH A 41 741 111 HOH HOH . 
H 5 HOH A 42 742 40 HOH HOH . 
H 5 HOH A 43 743 110 HOH HOH . 
H 5 HOH A 44 744 104 HOH HOH . 
H 5 HOH A 45 745 168 HOH HOH . 
H 5 HOH A 46 746 64 HOH HOH . 
H 5 HOH A 47 747 148 HOH HOH . 
H 5 HOH A 48 748 89 HOH HOH . 
H 5 HOH A 49 749 31 HOH HOH . 
H 5 HOH A 50 750 122 HOH HOH . 
H 5 HOH A 51 751 145 HOH HOH . 
H 5 HOH A 52 752 86 HOH HOH . 
H 5 HOH A 53 753 65 HOH HOH . 
H 5 HOH A 54 754 135 HOH HOH . 
H 5 HOH A 55 755 33 HOH HOH . 
H 5 HOH A 56 756 43 HOH HOH . 
H 5 HOH A 57 757 6 HOH HOH . 
H 5 HOH A 58 758 107 HOH HOH . 
H 5 HOH A 59 759 155 HOH HOH . 
H 5 HOH A 60 760 28 HOH HOH . 
H 5 HOH A 61 761 56 HOH HOH . 
H 5 HOH A 62 762 167 HOH HOH . 
H 5 HOH A 63 763 116 HOH HOH . 
H 5 HOH A 64 764 90 HOH HOH . 
H 5 HOH A 65 765 109 HOH HOH . 
H 5 HOH A 66 766 146 HOH HOH . 
H 5 HOH A 67 767 131 HOH HOH . 
H 5 HOH A 68 768 150 HOH HOH . 
H 5 HOH A 69 769 25 HOH HOH . 
H 5 HOH A 70 770 174 HOH HOH . 
H 5 HOH A 71 771 156 HOH HOH . 
H 5 HOH A 72 772 141 HOH HOH . 
H 5 HOH A 73 773 163 HOH HOH . 
H 5 HOH A 74 774 76 HOH HOH . 
H 5 HOH A 75 775 119 HOH HOH . 
H 5 HOH A 76 776 134 HOH HOH . 
H 5 HOH A 77 777 37 HOH HOH . 
H 5 HOH A 78 778 77 HOH HOH . 
I 5 HOH B 1 401 58 HOH HOH . 
I 5 HOH B 2 402 20 HOH HOH . 
I 5 HOH B 3 403 93 HOH HOH . 
I 5 HOH B 4 404 39 HOH HOH . 
I 5 HOH B 5 405 129 HOH HOH . 
I 5 HOH B 6 406 69 HOH HOH . 
I 5 HOH B 7 407 105 HOH HOH . 
J 5 HOH C 1 701 188 HOH HOH . 
J 5 HOH C 2 702 171 HOH HOH . 
J 5 HOH C 3 703 187 HOH HOH . 
J 5 HOH C 4 704 63 HOH HOH . 
J 5 HOH C 5 705 36 HOH HOH . 
J 5 HOH C 6 706 96 HOH HOH . 
J 5 HOH C 7 707 9 HOH HOH . 
J 5 HOH C 8 708 18 HOH HOH . 
J 5 HOH C 9 709 67 HOH HOH . 
J 5 HOH C 10 710 120 HOH HOH . 
J 5 HOH C 11 711 178 HOH HOH . 
J 5 HOH C 12 712 181 HOH HOH . 
J 5 HOH C 13 713 152 HOH HOH . 
J 5 HOH C 14 714 59 HOH HOH . 
J 5 HOH C 15 715 1 HOH HOH . 
J 5 HOH C 16 716 24 HOH HOH . 
J 5 HOH C 17 717 184 HOH HOH . 
J 5 HOH C 18 718 32 HOH HOH . 
J 5 HOH C 19 719 132 HOH HOH . 
J 5 HOH C 20 720 94 HOH HOH . 
J 5 HOH C 21 721 149 HOH HOH . 
J 5 HOH C 22 722 138 HOH HOH . 
J 5 HOH C 23 723 185 HOH HOH . 
J 5 HOH C 24 724 46 HOH HOH . 
J 5 HOH C 25 725 51 HOH HOH . 
J 5 HOH C 26 726 5 HOH HOH . 
J 5 HOH C 27 727 13 HOH HOH . 
J 5 HOH C 28 728 140 HOH HOH . 
J 5 HOH C 29 729 82 HOH HOH . 
J 5 HOH C 30 730 8 HOH HOH . 
J 5 HOH C 31 731 169 HOH HOH . 
J 5 HOH C 32 732 47 HOH HOH . 
J 5 HOH C 33 733 91 HOH HOH . 
J 5 HOH C 34 734 70 HOH HOH . 
J 5 HOH C 35 735 108 HOH HOH . 
J 5 HOH C 36 736 71 HOH HOH . 
J 5 HOH C 37 737 2 HOH HOH . 
J 5 HOH C 38 738 4 HOH HOH . 
J 5 HOH C 39 739 73 HOH HOH . 
J 5 HOH C 40 740 102 HOH HOH . 
J 5 HOH C 41 741 172 HOH HOH . 
J 5 HOH C 42 742 30 HOH HOH . 
J 5 HOH C 43 743 79 HOH HOH . 
J 5 HOH C 44 744 3 HOH HOH . 
J 5 HOH C 45 745 133 HOH HOH . 
J 5 HOH C 46 746 88 HOH HOH . 
J 5 HOH C 47 747 87 HOH HOH . 
J 5 HOH C 48 748 41 HOH HOH . 
J 5 HOH C 49 749 27 HOH HOH . 
J 5 HOH C 50 750 60 HOH HOH . 
J 5 HOH C 51 751 127 HOH HOH . 
J 5 HOH C 52 752 11 HOH HOH . 
J 5 HOH C 53 753 114 HOH HOH . 
J 5 HOH C 54 754 136 HOH HOH . 
J 5 HOH C 55 755 179 HOH HOH . 
J 5 HOH C 56 756 103 HOH HOH . 
J 5 HOH C 57 757 85 HOH HOH . 
J 5 HOH C 58 758 35 HOH HOH . 
J 5 HOH C 59 759 106 HOH HOH . 
J 5 HOH C 60 760 137 HOH HOH . 
J 5 HOH C 61 761 57 HOH HOH . 
J 5 HOH C 62 762 124 HOH HOH . 
J 5 HOH C 63 763 164 HOH HOH . 
J 5 HOH C 64 764 170 HOH HOH . 
J 5 HOH C 65 765 176 HOH HOH . 
J 5 HOH C 66 766 100 HOH HOH . 
J 5 HOH C 67 767 113 HOH HOH . 
J 5 HOH C 68 768 81 HOH HOH . 
J 5 HOH C 69 769 182 HOH HOH . 
J 5 HOH C 70 770 186 HOH HOH . 
J 5 HOH C 71 771 189 HOH HOH . 
J 5 HOH C 72 772 19 HOH HOH . 
J 5 HOH C 73 773 118 HOH HOH . 
J 5 HOH C 74 774 180 HOH HOH . 
J 5 HOH C 75 775 151 HOH HOH . 
J 5 HOH C 76 776 62 HOH HOH . 
J 5 HOH C 77 777 53 HOH HOH . 
J 5 HOH C 78 778 153 HOH HOH . 
J 5 HOH C 79 779 173 HOH HOH . 
J 5 HOH C 80 780 177 HOH HOH . 
J 5 HOH C 81 781 162 HOH HOH . 
J 5 HOH C 82 782 175 HOH HOH . 
J 5 HOH C 83 783 121 HOH HOH . 
J 5 HOH C 84 784 72 HOH HOH . 
J 5 HOH C 85 785 15 HOH HOH . 
J 5 HOH C 86 786 123 HOH HOH . 
J 5 HOH C 87 787 183 HOH HOH . 
J 5 HOH C 88 788 14 HOH HOH . 
K 5 HOH D 1 401 26 HOH HOH . 
K 5 HOH D 2 402 125 HOH HOH . 
K 5 HOH D 3 403 95 HOH HOH . 
K 5 HOH D 4 404 44 HOH HOH . 
K 5 HOH D 5 405 130 HOH HOH . 
K 5 HOH D 6 406 142 HOH HOH . 
K 5 HOH D 7 407 144 HOH HOH . 
K 5 HOH D 8 408 143 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 B3P . . . F 4 40.51 -47.092 135.967 1 71.05 ? C1 B3P 602 A 1 
HETATM 2 C C2 B3P . . . F 4 39.642 -47.14 134.668 1 74.62 ? C2 B3P 602 A 1 
HETATM 3 C C3 B3P . . . F 4 40.829 -45.618 136.315 1 60.19 ? C3 B3P 602 A 1 
HETATM 4 N N1 B3P . . . F 4 42.184 -45.308 135.895 1 79.03 ? N1 B3P 602 A 1 
HETATM 5 C C4 B3P . . . F 4 43.035 -44.845 136.978 1 79.05 ? C4 B3P 602 A 1 
HETATM 6 C C5 B3P . . . F 4 44.33 -45.695 136.982 1 78.36 ? C5 B3P 602 A 1 
HETATM 7 C C6 B3P . . . F 4 42.363 -44.948 138.371 1 66.26 ? C6 B3P 602 A 1 
HETATM 8 C C7 B3P . . . F 4 43.421 -43.371 136.717 1 71.74 ? C7 B3P 602 A 1 
HETATM 9 N N2 B3P . . . F 4 40.37 -47.819 133.621 1 76.67 ? N2 B3P 602 A 1 
HETATM 10 C C8 B3P . . . F 4 39.675 -47.665 132.338 1 86.45 ? C8 B3P 602 A 1 
HETATM 11 C C9 B3P . . . F 4 38.234 -48.129 132.478 1 77.66 ? C9 B3P 602 A 1 
HETATM 12 C C10 B3P . . . F 4 40.359 -48.522 131.281 1 77.19 ? C10 B3P 602 A 1 
HETATM 13 C C11 B3P . . . F 4 39.712 -46.201 131.912 1 86.84 ? C11 B3P 602 A 1 
HETATM 14 O O1 B3P . . . F 4 37.454 -47.577 131.438 1 63.09 ? O1 B3P 602 A 1 
HETATM 15 O O2 B3P . . . F 4 39.37 -49.151 130.471 1 80.8 ? O2 B3P 602 A 1 
HETATM 16 O O3 B3P . . . F 4 40.974 -45.64 132.221 1 89.57 ? O3 B3P 602 A 1 
HETATM 17 O O4 B3P . . . F 4 44.202 -46.736 136.054 1 106.65 ? O4 B3P 602 A 1 
HETATM 18 O O5 B3P . . . F 4 41.658 -43.76 138.682 1 64.72 ? O5 B3P 602 A 1 
HETATM 19 O O6 B3P . . . F 4 44.271 -43.292 135.587 1 72.45 ? O6 B3P 602 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           19 
#