data_5XJZ
#
_model_server_result.job_id            Pm8spekwDu31Q3jOXa4s3Q 
_model_server_result.datetime_utc      '2024-11-14 03:34:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xjz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    5XJZ 
#
_exptl.entry_id    5XJZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              107.868 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SILVER ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XJZ 
_cell.length_a            40.236 
_cell.length_b            42.546 
_cell.length_c            25.301 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XJZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N3 DC 4 A DC 4 1_555 E AG AG . A AG 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc2 A N7 DG 7 A DG 7 1_555 C AG AG . A AG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc3 A N3 DC 8 A DC 8 1_555 D AG AG . A AG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc4 C AG AG . A AG 101 1_555 B N7 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc5 D AG AG . A AG 102 1_555 B N3 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc6 E AG AG . A AG 103 2_754 B N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
hydrog 'DG-DC PAIR' hydrog1 A N2 DG 1 A DG 1 1_555 A O2 DC 6 A DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N1 DG 1 A DG 1 1_555 B N3 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N2 DG 1 A DG 1 1_555 B O2 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A O6 DG 1 A DG 1 1_555 B N4 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog5 A O2 DC 2 A DC 2 1_555 A N2 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 DC 2 A DC 2 1_555 B N1 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N4 DC 2 A DC 2 1_555 B O6 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O2 DC 2 A DC 2 1_555 B N2 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_2_PAIR hydrog9 A N6 DA 3 A DA 3 1_555 B N7 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_2_PAIR hydrog10 A N7 DA 3 A DA 3 1_555 B N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N1 DG 5 A DG 5 1_555 B N3 DC 2 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N2 DG 5 A DG 5 1_555 B O2 DC 2 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O6 DG 5 A DG 5 1_555 B N4 DC 2 B DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N3 DC 6 A DC 6 1_555 B N1 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N4 DC 6 A DC 6 1_555 B O6 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A O2 DC 6 A DC 6 1_555 B N2 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog17 A O6 DG 7 A DG 7 1_555 B N4 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog18 A N4 DC 8 A DC 8 1_555 B O6 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog19 B N2 DG 1 B DG 1 1_555 B O2 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog20 B O2 DC 2 B DC 2 1_555 B N2 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Ag 1' 
_chem_comp.formula_weight    107.868 
_chem_comp.id                AG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SILVER ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XJZ 
_atom_sites.fract_transf_matrix[1][1]    0.024853 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023504 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.039524 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AG A 1 101 1 AG AG . 
D 2 AG A 1 102 2 AG AG . 
E 2 AG A 1 103 3 AG AG . 
F 3 SPM B 1 101 1 SPM SPM . 
G 4 HOH A 1 201 42 HOH HOH . 
G 4 HOH A 2 202 8 HOH HOH . 
G 4 HOH A 3 203 32 HOH HOH . 
G 4 HOH A 4 204 11 HOH HOH . 
G 4 HOH A 5 205 111 HOH HOH . 
G 4 HOH A 6 206 6 HOH HOH . 
G 4 HOH A 7 207 34 HOH HOH . 
G 4 HOH A 8 208 25 HOH HOH . 
G 4 HOH A 9 209 97 HOH HOH . 
G 4 HOH A 10 210 1 HOH HOH . 
G 4 HOH A 11 211 13 HOH HOH . 
G 4 HOH A 12 212 46 HOH HOH . 
G 4 HOH A 13 213 28 HOH HOH . 
G 4 HOH A 14 214 72 HOH HOH . 
G 4 HOH A 15 215 66 HOH HOH . 
G 4 HOH A 16 216 18 HOH HOH . 
G 4 HOH A 17 217 75 HOH HOH . 
G 4 HOH A 18 218 48 HOH HOH . 
G 4 HOH A 19 219 31 HOH HOH . 
G 4 HOH A 20 220 65 HOH HOH . 
G 4 HOH A 21 221 21 HOH HOH . 
G 4 HOH A 22 222 41 HOH HOH . 
G 4 HOH A 23 223 4 HOH HOH . 
G 4 HOH A 24 224 23 HOH HOH . 
G 4 HOH A 25 225 67 HOH HOH . 
G 4 HOH A 26 226 36 HOH HOH . 
G 4 HOH A 27 227 20 HOH HOH . 
G 4 HOH A 28 228 101 HOH HOH . 
G 4 HOH A 29 229 73 HOH HOH . 
G 4 HOH A 30 230 89 HOH HOH . 
G 4 HOH A 31 231 96 HOH HOH . 
G 4 HOH A 32 232 56 HOH HOH . 
G 4 HOH A 33 233 90 HOH HOH . 
G 4 HOH A 34 234 114 HOH HOH . 
G 4 HOH A 35 235 95 HOH HOH . 
G 4 HOH A 36 236 92 HOH HOH . 
G 4 HOH A 37 237 94 HOH HOH . 
G 4 HOH A 38 238 117 HOH HOH . 
G 4 HOH A 39 239 91 HOH HOH . 
G 4 HOH A 40 240 93 HOH HOH . 
H 4 HOH B 1 201 5 HOH HOH . 
H 4 HOH B 2 202 22 HOH HOH . 
H 4 HOH B 3 203 12 HOH HOH . 
H 4 HOH B 4 204 14 HOH HOH . 
H 4 HOH B 5 205 58 HOH HOH . 
H 4 HOH B 6 206 51 HOH HOH . 
H 4 HOH B 7 207 9 HOH HOH . 
H 4 HOH B 8 208 7 HOH HOH . 
H 4 HOH B 9 209 44 HOH HOH . 
H 4 HOH B 10 210 10 HOH HOH . 
H 4 HOH B 11 211 33 HOH HOH . 
H 4 HOH B 12 212 16 HOH HOH . 
H 4 HOH B 13 213 17 HOH HOH . 
H 4 HOH B 14 214 55 HOH HOH . 
H 4 HOH B 15 215 61 HOH HOH . 
H 4 HOH B 16 216 26 HOH HOH . 
H 4 HOH B 17 217 2 HOH HOH . 
H 4 HOH B 18 218 45 HOH HOH . 
H 4 HOH B 19 219 3 HOH HOH . 
H 4 HOH B 20 220 50 HOH HOH . 
H 4 HOH B 21 221 29 HOH HOH . 
H 4 HOH B 22 222 60 HOH HOH . 
H 4 HOH B 23 223 35 HOH HOH . 
H 4 HOH B 24 224 59 HOH HOH . 
H 4 HOH B 25 225 104 HOH HOH . 
H 4 HOH B 26 226 57 HOH HOH . 
H 4 HOH B 27 227 30 HOH HOH . 
H 4 HOH B 28 228 102 HOH HOH . 
H 4 HOH B 29 229 38 HOH HOH . 
H 4 HOH B 30 230 19 HOH HOH . 
H 4 HOH B 31 231 27 HOH HOH . 
H 4 HOH B 32 232 100 HOH HOH . 
H 4 HOH B 33 233 116 HOH HOH . 
H 4 HOH B 34 234 105 HOH HOH . 
H 4 HOH B 35 235 103 HOH HOH . 
H 4 HOH B 36 236 118 HOH HOH . 
H 4 HOH B 37 237 24 HOH HOH . 
H 4 HOH B 38 238 64 HOH HOH . 
H 4 HOH B 39 239 107 HOH HOH . 
H 4 HOH B 40 240 106 HOH HOH . 
H 4 HOH B 41 241 115 HOH HOH . 
H 4 HOH B 42 242 109 HOH HOH . 
H 4 HOH B 43 243 119 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           AG 
_atom_site.label_atom_id         AG 
_atom_site.label_comp_id         AG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               32.67 
_atom_site.Cartn_y               9.503 
_atom_site.Cartn_z               -6.183 
_atom_site.occupancy             0.9 
_atom_site.B_iso_or_equiv        9.04 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          AG 
_atom_site.auth_comp_id          AG 
_atom_site.auth_seq_id           101 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#