data_5XKQ
#
_model_server_result.job_id            QojF10e5E5St7ztA9bOKtw 
_model_server_result.datetime_utc      '2024-10-10 02:34:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xkq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":203}' 
#
_entry.id    5XKQ 
#
_exptl.entry_id    5XKQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.95 
_cell.angle_gamma         90 
_cell.entry_id            5XKQ 
_cell.length_a            52.679 
_cell.length_b            61.392 
_cell.length_c            109.406 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,P,Q 1 1 
C,D,J,K,L,M,N,O,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 56 A HIS 56 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc2 A SG CYS 86 A CYS 86 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc3 A SG CYS 89 A CYS 89 1_555 E ZN ZN . A ZN 201 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc4 E ZN ZN . A ZN 201 1_555 P O HOH . A HOH 307 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc5 B ND1 HIS 56 B HIS 56 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 B SG CYS 86 B CYS 86 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc7 B SG CYS 89 B CYS 89 1_555 G ZN ZN . B ZN 201 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc8 G ZN ZN . B ZN 201 1_555 Q O HOH . B HOH 305 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc9 C ND1 HIS 56 C HIS 56 1_555 K ZN ZN . C ZN 202 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc10 C SG CYS 86 C CYS 86 1_555 K ZN ZN . C ZN 202 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 C SG CYS 89 C CYS 89 1_555 K ZN ZN . C ZN 202 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc12 K ZN ZN . C ZN 202 1_555 R O HOH . C HOH 304 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc13 D ND1 HIS 56 D HIS 56 1_555 M ZN ZN . D ZN 202 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc14 D SG CYS 86 D CYS 86 1_555 M ZN ZN . D ZN 202 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc15 D SG CYS 89 D CYS 89 1_555 M ZN ZN . D ZN 202 1_555 ? ? ? ? L ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc16 M ZN ZN . D ZN 202 1_555 S O HOH . D HOH 308 1_555 ? L ? ? ? ? ? ? ? ? ? ? 2.004 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     5XKQ 
_atom_sites.fract_transf_matrix[1][1]    0.018983 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000018 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016289 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00914 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZN A 1 201 201 ZN ZN . 
F 3 6AM A 1 202 202 6AM 6AM . 
G 2 ZN B 1 201 201 ZN ZN . 
H 3 6AM B 1 202 202 6AM 6AM . 
I 4 GOL B 1 203 203 GOL GOL . 
J 3 6AM C 1 201 201 6AM 6AM . 
K 2 ZN C 1 202 202 ZN ZN . 
L 3 6AM D 1 201 201 6AM 6AM . 
M 2 ZN D 1 202 202 ZN ZN . 
N 4 GOL D 1 203 203 GOL GOL . 
O 5 ACT D 1 204 204 ACT ACT . 
P 6 HOH A 1 301 301 HOH HOH . 
P 6 HOH A 2 302 302 HOH HOH . 
P 6 HOH A 3 303 303 HOH HOH . 
P 6 HOH A 4 304 304 HOH HOH . 
P 6 HOH A 5 305 306 HOH HOH . 
P 6 HOH A 6 306 305 HOH HOH . 
P 6 HOH A 7 307 307 HOH HOH . 
P 6 HOH A 8 308 309 HOH HOH . 
P 6 HOH A 9 309 308 HOH HOH . 
Q 6 HOH B 1 301 301 HOH HOH . 
Q 6 HOH B 2 302 303 HOH HOH . 
Q 6 HOH B 3 303 304 HOH HOH . 
Q 6 HOH B 4 304 305 HOH HOH . 
Q 6 HOH B 5 305 302 HOH HOH . 
Q 6 HOH B 6 306 306 HOH HOH . 
Q 6 HOH B 7 307 307 HOH HOH . 
Q 6 HOH B 8 308 308 HOH HOH . 
Q 6 HOH B 9 309 309 HOH HOH . 
R 6 HOH C 1 301 301 HOH HOH . 
R 6 HOH C 2 302 304 HOH HOH . 
R 6 HOH C 3 303 305 HOH HOH . 
R 6 HOH C 4 304 303 HOH HOH . 
R 6 HOH C 5 305 307 HOH HOH . 
R 6 HOH C 6 306 308 HOH HOH . 
R 6 HOH C 7 307 302 HOH HOH . 
R 6 HOH C 8 308 306 HOH HOH . 
S 6 HOH D 1 301 301 HOH HOH . 
S 6 HOH D 2 302 308 HOH HOH . 
S 6 HOH D 3 303 302 HOH HOH . 
S 6 HOH D 4 304 307 HOH HOH . 
S 6 HOH D 5 305 303 HOH HOH . 
S 6 HOH D 6 306 306 HOH HOH . 
S 6 HOH D 7 307 305 HOH HOH . 
S 6 HOH D 8 308 304 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 4 -10.341 1.243 13.891 1 43.43 ? C1 GOL 203 B 1 
HETATM 2 O O1 GOL . . . I 4 -11.521 1.102 13.042 1 40.24 ? O1 GOL 203 B 1 
HETATM 3 C C2 GOL . . . I 4 -9.761 2.673 14.064 1 42.93 ? C2 GOL 203 B 1 
HETATM 4 O O2 GOL . . . I 4 -10.432 3.502 15.024 1 40.52 ? O2 GOL 203 B 1 
HETATM 5 C C3 GOL . . . I 4 -8.298 2.731 14.504 1 37.4 ? C3 GOL 203 B 1 
HETATM 6 O O3 GOL . . . I 4 -8.168 4.057 15.031 1 34.91 ? O3 GOL 203 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#