data_5XLS # _model_server_result.job_id vww3QXgIME2a1-WN1NnS2A _model_server_result.datetime_utc '2024-11-21 20:11:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5XLS # _exptl.entry_id 5XLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URACIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XLS _cell.length_a 74.721 _cell.length_b 134.726 _cell.length_c 143.452 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 211 A HIS 211 1_555 D W10 KEG . A KEG 503 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 3.259 ? metalc ? metalc2 A OE2 GLU 224 A GLU 224 1_555 C W11 KEG . A KEG 502 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'C4 H4 N2 O2' _chem_comp.formula_weight 112.087 _chem_comp.id URA _chem_comp.mon_nstd_flag . _chem_comp.name URACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URA sing 434 n n N1 C6 URA sing 435 n n N1 HN1 URA sing 436 n n C2 O2 URA doub 437 n n C2 N3 URA sing 438 n n N3 C4 URA sing 439 n n N3 HN3 URA sing 440 n n C4 O4 URA doub 441 n n C4 C5 URA sing 442 n n C5 C6 URA doub 443 n n C5 H5 URA sing 444 n n C6 H6 URA sing 445 n n # _atom_sites.entry_id 5XLS _atom_sites.fract_transf_matrix[1][1] 0.013383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URA A 1 501 1 URA URA . C 3 KEG A 1 502 1 KEG KEG . D 3 KEG A 1 503 2 KEG KEG . E 4 HOH A 1 601 2 HOH HOH . E 4 HOH A 2 602 26 HOH HOH . E 4 HOH A 3 603 4 HOH HOH . E 4 HOH A 4 604 9 HOH HOH . E 4 HOH A 5 605 23 HOH HOH . E 4 HOH A 6 606 12 HOH HOH . E 4 HOH A 7 607 11 HOH HOH . E 4 HOH A 8 608 3 HOH HOH . E 4 HOH A 9 609 35 HOH HOH . E 4 HOH A 10 610 27 HOH HOH . E 4 HOH A 11 611 42 HOH HOH . E 4 HOH A 12 612 28 HOH HOH . E 4 HOH A 13 613 18 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 20 HOH HOH . E 4 HOH A 16 616 7 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 25 HOH HOH . E 4 HOH A 19 619 24 HOH HOH . E 4 HOH A 20 620 15 HOH HOH . E 4 HOH A 21 621 6 HOH HOH . E 4 HOH A 22 622 40 HOH HOH . E 4 HOH A 23 623 8 HOH HOH . E 4 HOH A 24 624 16 HOH HOH . E 4 HOH A 25 625 19 HOH HOH . E 4 HOH A 26 626 13 HOH HOH . E 4 HOH A 27 627 34 HOH HOH . E 4 HOH A 28 628 1 HOH HOH . E 4 HOH A 29 629 5 HOH HOH . E 4 HOH A 30 630 32 HOH HOH . E 4 HOH A 31 631 29 HOH HOH . E 4 HOH A 32 632 21 HOH HOH . E 4 HOH A 33 633 41 HOH HOH . E 4 HOH A 34 634 37 HOH HOH . E 4 HOH A 35 635 31 HOH HOH . E 4 HOH A 36 636 30 HOH HOH . E 4 HOH A 37 637 10 HOH HOH . E 4 HOH A 38 638 33 HOH HOH . E 4 HOH A 39 639 39 HOH HOH . E 4 HOH A 40 640 22 HOH HOH . E 4 HOH A 41 641 36 HOH HOH . E 4 HOH A 42 642 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URA . . . B 2 19.102 11.006 -9.793 1 29.11 ? N1 URA 501 A 1 HETATM 2 C C2 URA . . . B 2 19.888 11.538 -8.846 1 29.04 ? C2 URA 501 A 1 HETATM 3 O O2 URA . . . B 2 21.134 11.426 -8.938 1 28.98 ? O2 URA 501 A 1 HETATM 4 N N3 URA . . . B 2 19.352 12.192 -7.805 1 28.97 ? N3 URA 501 A 1 HETATM 5 C C4 URA . . . B 2 18.029 12.32 -7.692 1 29.64 ? C4 URA 501 A 1 HETATM 6 O O4 URA . . . B 2 17.538 12.928 -6.723 1 30.36 ? O4 URA 501 A 1 HETATM 7 C C5 URA . . . B 2 17.195 11.779 -8.656 1 29.6 ? C5 URA 501 A 1 HETATM 8 C C6 URA . . . B 2 17.77 11.107 -9.721 1 29.31 ? C6 URA 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #