data_5XLS # _model_server_result.job_id z1l38oo_gbKwIiwgV1FyYg _model_server_result.datetime_utc '2024-11-21 19:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5XLS # _exptl.entry_id 5XLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 2877.03 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 12-TUNGSTOPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XLS _cell.length_a 74.721 _cell.length_b 134.726 _cell.length_c 143.452 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 211 A HIS 211 1_555 D W10 KEG . A KEG 503 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 3.259 ? metalc ? metalc2 A OE2 GLU 224 A GLU 224 1_555 C W11 KEG . A KEG 502 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'O40 P W12' _chem_comp.formula_weight 2877.03 _chem_comp.id KEG _chem_comp.mon_nstd_flag . _chem_comp.name 12-TUNGSTOPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag W1 O1 KEG doub 173 n n W1 O17 KEG sing 174 n n W1 O23 KEG sing 175 n n W1 O25 KEG sing 176 n n W1 O27 KEG sing 177 n n W1 O29 KEG sing 178 n n W2 O2 KEG doub 179 n n W2 O18 KEG sing 180 n n W2 O24 KEG sing 181 n n W2 O26 KEG sing 182 n n W2 O28 KEG sing 183 n n W2 O30 KEG sing 184 n n W3 O5 KEG doub 185 n n W3 O21 KEG sing 186 n n W3 O25 KEG sing 187 n n W3 O31 KEG sing 188 n n W3 O33 KEG sing 189 n n W3 O37 KEG sing 190 n n W4 O6 KEG doub 191 n n W4 O21 KEG sing 192 n n W4 O26 KEG sing 193 n n W4 O31 KEG sing 194 n n W4 O34 KEG sing 195 n n W4 O38 KEG sing 196 n n W5 O7 KEG doub 197 n n W5 O17 KEG sing 198 n n W5 O23 KEG sing 199 n n W5 O32 KEG sing 200 n n W5 O35 KEG sing 201 n n W5 O39 KEG sing 202 n n W6 O8 KEG doub 203 n n W6 O18 KEG sing 204 n n W6 O24 KEG sing 205 n n W6 O32 KEG sing 206 n n W6 O36 KEG sing 207 n n W6 O40 KEG sing 208 n n W7 O9 KEG doub 209 n n W7 O19 KEG sing 210 n n W7 O29 KEG sing 211 n n W7 O33 KEG sing 212 n n W7 O41 KEG sing 213 n n W7 O43 KEG sing 214 n n W8 O10 KEG doub 215 n n W8 O19 KEG sing 216 n n W8 O30 KEG sing 217 n n W8 O34 KEG sing 218 n n W8 O41 KEG sing 219 n n W8 O44 KEG sing 220 n n W9 O11 KEG doub 221 n n W9 O17 KEG sing 222 n n W9 O27 KEG sing 223 n n W9 O35 KEG sing 224 n n W9 O42 KEG sing 225 n n W9 O45 KEG sing 226 n n W10 O12 KEG doub 227 n n W10 O18 KEG sing 228 n n W10 O28 KEG sing 229 n n W10 O36 KEG sing 230 n n W10 O42 KEG sing 231 n n W10 O46 KEG sing 232 n n W11 O13 KEG doub 233 n n W11 O19 KEG sing 234 n n W11 O39 KEG sing 235 n n W11 O40 KEG sing 236 n n W11 O43 KEG sing 237 n n W11 O44 KEG sing 238 n n W12 O14 KEG doub 239 n n W12 O21 KEG sing 240 n n W12 O37 KEG sing 241 n n W12 O38 KEG sing 242 n n W12 O45 KEG sing 243 n n W12 O46 KEG sing 244 n n P1 O17 KEG sing 245 n n P1 O18 KEG sing 246 n n P1 O19 KEG sing 247 n n P1 O21 KEG sing 248 n n # _atom_sites.entry_id 5XLS _atom_sites.fract_transf_matrix[1][1] 0.013383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URA A 1 501 1 URA URA . C 3 KEG A 1 502 1 KEG KEG . D 3 KEG A 1 503 2 KEG KEG . E 4 HOH A 1 601 2 HOH HOH . E 4 HOH A 2 602 26 HOH HOH . E 4 HOH A 3 603 4 HOH HOH . E 4 HOH A 4 604 9 HOH HOH . E 4 HOH A 5 605 23 HOH HOH . E 4 HOH A 6 606 12 HOH HOH . E 4 HOH A 7 607 11 HOH HOH . E 4 HOH A 8 608 3 HOH HOH . E 4 HOH A 9 609 35 HOH HOH . E 4 HOH A 10 610 27 HOH HOH . E 4 HOH A 11 611 42 HOH HOH . E 4 HOH A 12 612 28 HOH HOH . E 4 HOH A 13 613 18 HOH HOH . E 4 HOH A 14 614 14 HOH HOH . E 4 HOH A 15 615 20 HOH HOH . E 4 HOH A 16 616 7 HOH HOH . E 4 HOH A 17 617 17 HOH HOH . E 4 HOH A 18 618 25 HOH HOH . E 4 HOH A 19 619 24 HOH HOH . E 4 HOH A 20 620 15 HOH HOH . E 4 HOH A 21 621 6 HOH HOH . E 4 HOH A 22 622 40 HOH HOH . E 4 HOH A 23 623 8 HOH HOH . E 4 HOH A 24 624 16 HOH HOH . E 4 HOH A 25 625 19 HOH HOH . E 4 HOH A 26 626 13 HOH HOH . E 4 HOH A 27 627 34 HOH HOH . E 4 HOH A 28 628 1 HOH HOH . E 4 HOH A 29 629 5 HOH HOH . E 4 HOH A 30 630 32 HOH HOH . E 4 HOH A 31 631 29 HOH HOH . E 4 HOH A 32 632 21 HOH HOH . E 4 HOH A 33 633 41 HOH HOH . E 4 HOH A 34 634 37 HOH HOH . E 4 HOH A 35 635 31 HOH HOH . E 4 HOH A 36 636 30 HOH HOH . E 4 HOH A 37 637 10 HOH HOH . E 4 HOH A 38 638 33 HOH HOH . E 4 HOH A 39 639 39 HOH HOH . E 4 HOH A 40 640 22 HOH HOH . E 4 HOH A 41 641 36 HOH HOH . E 4 HOH A 42 642 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 W W1 KEG . . . D 3 -1.068 24.355 -35.584 0.49 77.39 ? W1 KEG 503 A 1 HETATM 2 W W2 KEG . . . D 3 1.505 30.055 -38.11 0.49 88.01 ? W2 KEG 503 A 1 HETATM 3 W W3 KEG . . . D 3 3.083 26.616 -34.434 0.49 70.51 ? W3 KEG 503 A 1 HETATM 4 W W4 KEG . . . D 3 2.64 26.953 -37.607 0.49 78.93 ? W4 KEG 503 A 1 HETATM 5 W W5 KEG . . . D 3 -2.603 26.895 -34.214 0.49 77.79 ? W5 KEG 503 A 1 HETATM 6 W W6 KEG . . . D 3 -1.861 30.055 -37.474 0.49 93.48 ? W6 KEG 503 A 1 HETATM 7 W W7 KEG . . . D 3 0.697 27.732 -32.695 0.49 73.27 ? W7 KEG 503 A 1 HETATM 8 W W8 KEG . . . D 3 2.005 30.116 -34.404 0.49 80.7 ? W8 KEG 503 A 1 HETATM 9 W W9 KEG . . . D 3 -2.916 26.561 -37.422 0.49 83.38 ? W9 KEG 503 A 1 HETATM 10 W W10 KEG . . . D 3 -0.539 27.707 -39.148 0.49 86.57 ? W10 KEG 503 A 1 HETATM 11 W W11 KEG . . . D 3 -1.347 30.122 -33.859 0.49 85.18 ? W11 KEG 503 A 1 HETATM 12 W W12 KEG . . . D 3 1.215 24.313 -36.243 0.49 75.24 ? W12 KEG 503 A 1 HETATM 13 O O1 KEG . . . D 3 -0.187 22.732 -35.383 0.49 75.64 ? O1 KEG 503 A 1 HETATM 14 O O2 KEG . . . D 3 3.242 30.641 -38.736 0.49 83.2 ? O2 KEG 503 A 1 HETATM 15 O O5 KEG . . . D 3 4.404 26.373 -33.108 0.49 69.99 ? O5 KEG 503 A 1 HETATM 16 O O6 KEG . . . D 3 3.959 26.691 -38.939 0.49 78.06 ? O6 KEG 503 A 1 HETATM 17 O O7 KEG . . . D 3 -3.824 27.14 -32.783 0.49 79.11 ? O7 KEG 503 A 1 HETATM 18 O O8 KEG . . . D 3 -3.445 31.164 -37.384 0.49 92.37 ? O8 KEG 503 A 1 HETATM 19 O O9 KEG . . . D 3 0.962 27.719 -30.822 0.49 72.29 ? O9 KEG 503 A 1 HETATM 20 O O10 KEG . . . D 3 3.526 31.326 -34.346 0.49 77.51 ? O10 KEG 503 A 1 HETATM 21 O O11 KEG . . . D 3 -4.259 26.349 -38.728 0.49 92.17 ? O11 KEG 503 A 1 HETATM 22 O O12 KEG . . . D 3 -0.529 27.55 -41.024 0.49 91.59 ? O12 KEG 503 A 1 HETATM 23 O O13 KEG . . . D 3 -3.039 30.63 -33.046 0.49 84.63 ? O13 KEG 503 A 1 HETATM 24 O O14 KEG . . . D 3 1.521 22.592 -36.909 0.49 75.28 ? O14 KEG 503 A 1 HETATM 25 O O17 KEG . . . D 3 -2.119 25.971 -35.768 0.49 81.68 ? O17 KEG 503 A 1 HETATM 26 O O18 KEG . . . D 3 -0.284 29.301 -38.125 0.49 87.17 ? O18 KEG 503 A 1 HETATM 27 O O19 KEG . . . D 3 0.425 29.33 -33.734 0.49 78.12 ? O19 KEG 503 A 1 HETATM 28 O O21 KEG . . . D 3 2.234 26 -36.026 0.49 75.68 ? O21 KEG 503 A 1 HETATM 29 O O23 KEG . . . D 3 -2.575 24.712 -34.338 0.49 78.36 ? O23 KEG 503 A 1 HETATM 30 O O24 KEG . . . D 3 -0.298 31.046 -38.291 0.49 89.99 ? O24 KEG 503 A 1 HETATM 31 O O25 KEG . . . D 3 0.843 25.733 -34.611 0.49 74.7 ? O25 KEG 503 A 1 HETATM 32 O O26 KEG . . . D 3 3.133 28.809 -38.269 0.49 80.55 ? O26 KEG 503 A 1 HETATM 33 O O27 KEG . . . D 3 -2.36 24.517 -37.06 0.49 83.52 ? O27 KEG 503 A 1 HETATM 34 O O28 KEG . . . D 3 1.174 28.678 -39.733 0.49 86.82 ? O28 KEG 503 A 1 HETATM 35 O O29 KEG . . . D 3 -0.477 26.019 -33.973 0.49 76.24 ? O29 KEG 503 A 1 HETATM 36 O O30 KEG . . . D 3 1.308 30.764 -36.238 0.49 83.58 ? O30 KEG 503 A 1 HETATM 37 O O31 KEG . . . D 3 4.098 26.774 -36.095 0.49 73.38 ? O31 KEG 503 A 1 HETATM 38 O O32 KEG . . . D 3 -2.647 28.352 -36.057 0.49 85.72 ? O32 KEG 503 A 1 HETATM 39 O O33 KEG . . . D 3 2.391 28.065 -33.569 0.49 73.45 ? O33 KEG 503 A 1 HETATM 40 O O34 KEG . . . D 3 2.754 28.411 -35.802 0.49 77.23 ? O34 KEG 503 A 1 HETATM 41 O O35 KEG . . . D 3 -4.027 26.752 -35.766 0.49 85.73 ? O35 KEG 503 A 1 HETATM 42 O O36 KEG . . . D 3 -1.659 29.337 -39.357 0.49 91.93 ? O36 KEG 503 A 1 HETATM 43 O O37 KEG . . . D 3 2.635 24.658 -34.933 0.49 72.2 ? O37 KEG 503 A 1 HETATM 44 O O38 KEG . . . D 3 2.797 24.885 -37.471 0.49 75.75 ? O38 KEG 503 A 1 HETATM 45 O O39 KEG . . . D 3 -1.125 28.163 -34.384 0.49 80.23 ? O39 KEG 503 A 1 HETATM 46 O O40 KEG . . . D 3 -0.929 30.701 -35.736 0.49 84.88 ? O40 KEG 503 A 1 HETATM 47 O O41 KEG . . . D 3 1.773 29.376 -32.558 0.49 74.42 ? O41 KEG 503 A 1 HETATM 48 O O42 KEG . . . D 3 -2.262 28.01 -38.312 0.49 88.38 ? O42 KEG 503 A 1 HETATM 49 O O43 KEG . . . D 3 -0.985 28.748 -32.221 0.49 77.9 ? O43 KEG 503 A 1 HETATM 50 O O44 KEG . . . D 3 0.405 31.241 -33.664 0.49 81.14 ? O44 KEG 503 A 1 HETATM 51 O O45 KEG . . . D 3 -0.731 25.464 -37.445 0.49 81.95 ? O45 KEG 503 A 1 HETATM 52 O O46 KEG . . . D 3 0.472 26.295 -37.434 0.49 81.1 ? O46 KEG 503 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 52 #