data_5XLW
#
_model_server_result.job_id            6SoiytM5fAog53Y8uFSsKA 
_model_server_result.datetime_utc      '2024-10-11 21:56:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xlw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":406}' 
#
_entry.id    5XLW 
#
_exptl.entry_id    5XLW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5XLW 
_cell.length_a            119.33 
_cell.length_b            119.33 
_cell.length_c            127.44 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XLW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 120 n n 
C1 C2 EDO sing 121 n n 
C1 H11 EDO sing 122 n n 
C1 H12 EDO sing 123 n n 
O1 HO1 EDO sing 124 n n 
C2 O2 EDO sing 125 n n 
C2 H21 EDO sing 126 n n 
C2 H22 EDO sing 127 n n 
O2 HO2 EDO sing 128 n n 
#
_atom_sites.entry_id                     5XLW 
_atom_sites.fract_transf_matrix[1][1]    0.00838 
_atom_sites.fract_transf_matrix[1][2]    0.004838 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009677 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007847 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO B 1 401 5 EDO EDO . 
D 2 EDO B 1 402 6 EDO EDO . 
E 2 EDO B 1 403 7 EDO EDO . 
F 2 EDO B 1 404 9 EDO EDO . 
G 2 EDO B 1 405 10 EDO EDO . 
H 2 EDO B 1 406 11 EDO EDO . 
I 2 EDO B 1 407 12 EDO EDO . 
J 2 EDO B 1 408 17 EDO EDO . 
K 2 EDO B 1 409 18 EDO EDO . 
L 2 EDO B 1 410 28 EDO EDO . 
M 2 EDO B 1 411 30 EDO EDO . 
N 2 EDO B 1 412 31 EDO EDO . 
O 3 1PE B 1 413 1 1PE 1PE . 
P 4 SO4 B 1 414 2 SO4 SO4 . 
Q 4 SO4 B 1 415 3 SO4 SO4 . 
R 5 PEG A 1 401 1 PEG PEG . 
S 2 EDO A 1 402 1 EDO EDO . 
T 2 EDO A 1 403 4 EDO EDO . 
U 2 EDO A 1 404 8 EDO EDO . 
V 2 EDO A 1 405 19 EDO EDO . 
W 2 EDO A 1 406 20 EDO EDO . 
X 2 EDO A 1 407 27 EDO EDO . 
Y 2 EDO A 1 408 29 EDO EDO . 
Z 2 EDO A 1 409 32 EDO EDO . 
AA 4 SO4 A 1 410 1 SO4 SO4 . 
BA 4 SO4 A 1 411 4 SO4 SO4 . 
CA 6 HOH B 1 501 100 HOH HOH . 
CA 6 HOH B 2 502 164 HOH HOH . 
CA 6 HOH B 3 503 174 HOH HOH . 
CA 6 HOH B 4 504 143 HOH HOH . 
CA 6 HOH B 5 505 99 HOH HOH . 
CA 6 HOH B 6 506 147 HOH HOH . 
CA 6 HOH B 7 507 96 HOH HOH . 
CA 6 HOH B 8 508 137 HOH HOH . 
CA 6 HOH B 9 509 29 HOH HOH . 
CA 6 HOH B 10 510 52 HOH HOH . 
CA 6 HOH B 11 511 119 HOH HOH . 
CA 6 HOH B 12 512 57 HOH HOH . 
CA 6 HOH B 13 513 24 HOH HOH . 
CA 6 HOH B 14 514 92 HOH HOH . 
CA 6 HOH B 15 515 121 HOH HOH . 
CA 6 HOH B 16 516 91 HOH HOH . 
CA 6 HOH B 17 517 108 HOH HOH . 
CA 6 HOH B 18 518 32 HOH HOH . 
CA 6 HOH B 19 519 88 HOH HOH . 
CA 6 HOH B 20 520 177 HOH HOH . 
CA 6 HOH B 21 521 59 HOH HOH . 
CA 6 HOH B 22 522 149 HOH HOH . 
CA 6 HOH B 23 523 33 HOH HOH . 
CA 6 HOH B 24 524 127 HOH HOH . 
CA 6 HOH B 25 525 152 HOH HOH . 
CA 6 HOH B 26 526 26 HOH HOH . 
CA 6 HOH B 27 527 41 HOH HOH . 
CA 6 HOH B 28 528 168 HOH HOH . 
CA 6 HOH B 29 529 97 HOH HOH . 
CA 6 HOH B 30 530 25 HOH HOH . 
CA 6 HOH B 31 531 4 HOH HOH . 
CA 6 HOH B 32 532 47 HOH HOH . 
CA 6 HOH B 33 533 138 HOH HOH . 
CA 6 HOH B 34 534 50 HOH HOH . 
CA 6 HOH B 35 535 48 HOH HOH . 
CA 6 HOH B 36 536 94 HOH HOH . 
CA 6 HOH B 37 537 3 HOH HOH . 
CA 6 HOH B 38 538 160 HOH HOH . 
CA 6 HOH B 39 539 151 HOH HOH . 
CA 6 HOH B 40 540 145 HOH HOH . 
CA 6 HOH B 41 541 157 HOH HOH . 
CA 6 HOH B 42 542 31 HOH HOH . 
CA 6 HOH B 43 543 45 HOH HOH . 
CA 6 HOH B 44 544 93 HOH HOH . 
CA 6 HOH B 45 545 83 HOH HOH . 
CA 6 HOH B 46 546 86 HOH HOH . 
CA 6 HOH B 47 547 49 HOH HOH . 
CA 6 HOH B 48 548 30 HOH HOH . 
CA 6 HOH B 49 549 131 HOH HOH . 
CA 6 HOH B 50 550 46 HOH HOH . 
CA 6 HOH B 51 551 90 HOH HOH . 
CA 6 HOH B 52 552 125 HOH HOH . 
CA 6 HOH B 53 553 23 HOH HOH . 
CA 6 HOH B 54 554 55 HOH HOH . 
CA 6 HOH B 55 555 126 HOH HOH . 
CA 6 HOH B 56 556 142 HOH HOH . 
CA 6 HOH B 57 557 134 HOH HOH . 
CA 6 HOH B 58 558 51 HOH HOH . 
CA 6 HOH B 59 559 58 HOH HOH . 
CA 6 HOH B 60 560 84 HOH HOH . 
CA 6 HOH B 61 561 135 HOH HOH . 
CA 6 HOH B 62 562 101 HOH HOH . 
CA 6 HOH B 63 563 5 HOH HOH . 
CA 6 HOH B 64 564 42 HOH HOH . 
CA 6 HOH B 65 565 117 HOH HOH . 
CA 6 HOH B 66 566 44 HOH HOH . 
CA 6 HOH B 67 567 8 HOH HOH . 
CA 6 HOH B 68 568 173 HOH HOH . 
CA 6 HOH B 69 569 109 HOH HOH . 
CA 6 HOH B 70 570 161 HOH HOH . 
CA 6 HOH B 71 571 54 HOH HOH . 
CA 6 HOH B 72 572 139 HOH HOH . 
CA 6 HOH B 73 573 87 HOH HOH . 
CA 6 HOH B 74 574 61 HOH HOH . 
CA 6 HOH B 75 575 124 HOH HOH . 
CA 6 HOH B 76 576 95 HOH HOH . 
CA 6 HOH B 77 577 2 HOH HOH . 
CA 6 HOH B 78 578 22 HOH HOH . 
CA 6 HOH B 79 579 162 HOH HOH . 
CA 6 HOH B 80 580 60 HOH HOH . 
CA 6 HOH B 81 581 170 HOH HOH . 
CA 6 HOH B 82 582 21 HOH HOH . 
CA 6 HOH B 83 583 27 HOH HOH . 
CA 6 HOH B 84 584 1 HOH HOH . 
CA 6 HOH B 85 585 155 HOH HOH . 
CA 6 HOH B 86 586 163 HOH HOH . 
CA 6 HOH B 87 587 110 HOH HOH . 
CA 6 HOH B 88 588 18 HOH HOH . 
CA 6 HOH B 89 589 28 HOH HOH . 
CA 6 HOH B 90 590 56 HOH HOH . 
CA 6 HOH B 91 591 178 HOH HOH . 
CA 6 HOH B 92 592 153 HOH HOH . 
CA 6 HOH B 93 593 136 HOH HOH . 
CA 6 HOH B 94 594 166 HOH HOH . 
CA 6 HOH B 95 595 89 HOH HOH . 
CA 6 HOH B 96 596 104 HOH HOH . 
DA 6 HOH A 1 501 107 HOH HOH . 
DA 6 HOH A 2 502 105 HOH HOH . 
DA 6 HOH A 3 503 172 HOH HOH . 
DA 6 HOH A 4 504 11 HOH HOH . 
DA 6 HOH A 5 505 76 HOH HOH . 
DA 6 HOH A 6 506 114 HOH HOH . 
DA 6 HOH A 7 507 68 HOH HOH . 
DA 6 HOH A 8 508 19 HOH HOH . 
DA 6 HOH A 9 509 165 HOH HOH . 
DA 6 HOH A 10 510 7 HOH HOH . 
DA 6 HOH A 11 511 112 HOH HOH . 
DA 6 HOH A 12 512 15 HOH HOH . 
DA 6 HOH A 13 513 39 HOH HOH . 
DA 6 HOH A 14 514 67 HOH HOH . 
DA 6 HOH A 15 515 69 HOH HOH . 
DA 6 HOH A 16 516 175 HOH HOH . 
DA 6 HOH A 17 517 9 HOH HOH . 
DA 6 HOH A 18 518 74 HOH HOH . 
DA 6 HOH A 19 519 118 HOH HOH . 
DA 6 HOH A 20 520 71 HOH HOH . 
DA 6 HOH A 21 521 10 HOH HOH . 
DA 6 HOH A 22 522 133 HOH HOH . 
DA 6 HOH A 23 523 115 HOH HOH . 
DA 6 HOH A 24 524 80 HOH HOH . 
DA 6 HOH A 25 525 43 HOH HOH . 
DA 6 HOH A 26 526 53 HOH HOH . 
DA 6 HOH A 27 527 129 HOH HOH . 
DA 6 HOH A 28 528 38 HOH HOH . 
DA 6 HOH A 29 529 85 HOH HOH . 
DA 6 HOH A 30 530 82 HOH HOH . 
DA 6 HOH A 31 531 73 HOH HOH . 
DA 6 HOH A 32 532 98 HOH HOH . 
DA 6 HOH A 33 533 65 HOH HOH . 
DA 6 HOH A 34 534 122 HOH HOH . 
DA 6 HOH A 35 535 78 HOH HOH . 
DA 6 HOH A 36 536 132 HOH HOH . 
DA 6 HOH A 37 537 140 HOH HOH . 
DA 6 HOH A 38 538 102 HOH HOH . 
DA 6 HOH A 39 539 72 HOH HOH . 
DA 6 HOH A 40 540 75 HOH HOH . 
DA 6 HOH A 41 541 16 HOH HOH . 
DA 6 HOH A 42 542 79 HOH HOH . 
DA 6 HOH A 43 543 13 HOH HOH . 
DA 6 HOH A 44 544 37 HOH HOH . 
DA 6 HOH A 45 545 70 HOH HOH . 
DA 6 HOH A 46 546 156 HOH HOH . 
DA 6 HOH A 47 547 20 HOH HOH . 
DA 6 HOH A 48 548 34 HOH HOH . 
DA 6 HOH A 49 549 116 HOH HOH . 
DA 6 HOH A 50 550 17 HOH HOH . 
DA 6 HOH A 51 551 169 HOH HOH . 
DA 6 HOH A 52 552 159 HOH HOH . 
DA 6 HOH A 53 553 120 HOH HOH . 
DA 6 HOH A 54 554 14 HOH HOH . 
DA 6 HOH A 55 555 144 HOH HOH . 
DA 6 HOH A 56 556 63 HOH HOH . 
DA 6 HOH A 57 557 158 HOH HOH . 
DA 6 HOH A 58 558 128 HOH HOH . 
DA 6 HOH A 59 559 35 HOH HOH . 
DA 6 HOH A 60 560 123 HOH HOH . 
DA 6 HOH A 61 561 6 HOH HOH . 
DA 6 HOH A 62 562 176 HOH HOH . 
DA 6 HOH A 63 563 64 HOH HOH . 
DA 6 HOH A 64 564 146 HOH HOH . 
DA 6 HOH A 65 565 130 HOH HOH . 
DA 6 HOH A 66 566 113 HOH HOH . 
DA 6 HOH A 67 567 66 HOH HOH . 
DA 6 HOH A 68 568 148 HOH HOH . 
DA 6 HOH A 69 569 81 HOH HOH . 
DA 6 HOH A 70 570 77 HOH HOH . 
DA 6 HOH A 71 571 12 HOH HOH . 
DA 6 HOH A 72 572 36 HOH HOH . 
DA 6 HOH A 73 573 111 HOH HOH . 
DA 6 HOH A 74 574 171 HOH HOH . 
DA 6 HOH A 75 575 106 HOH HOH . 
DA 6 HOH A 76 576 62 HOH HOH . 
DA 6 HOH A 77 577 40 HOH HOH . 
DA 6 HOH A 78 578 103 HOH HOH . 
DA 6 HOH A 79 579 167 HOH HOH . 
DA 6 HOH A 80 580 154 HOH HOH . 
DA 6 HOH A 81 581 141 HOH HOH . 
DA 6 HOH A 82 582 150 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 2 34.94 45.867 36.782 1 54.22 ? C1 EDO 406 B 1 
HETATM 2 O O1 EDO . . . H 2 34.379 45.468 38.039 1 55 ? O1 EDO 406 B 1 
HETATM 3 C C2 EDO . . . H 2 35.294 44.609 35.966 1 50.28 ? C2 EDO 406 B 1 
HETATM 4 O O2 EDO . . . H 2 35.007 44.721 34.543 1 52.39 ? O2 EDO 406 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#