data_5XMK # _model_server_result.job_id bhcXQEcGIpWIONdkjoyuYw _model_server_result.datetime_utc '2024-11-05 02:21:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":501}' # _entry.id 5XMK # _exptl.entry_id 5XMK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XMK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5XMK _atom_sites.fract_transf_matrix[1][1] 0.003946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 3 ATP B 1 501 501 ATP ATP . P 3 ATP C 1 501 501 ATP ATP . Q 3 ATP D 1 501 501 ATP ATP . R 3 ATP E 1 501 501 ATP ATP . S 3 ATP F 1 501 501 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . O 3 112.123 105.077 132.571 1 199.01 ? PG ATP 501 B 1 HETATM 2 O O1G ATP . . . O 3 112.47 104.498 131.22 1 200.22 ? O1G ATP 501 B 1 HETATM 3 O O2G ATP . . . O 3 111.071 106.161 132.542 1 198.64 ? O2G ATP 501 B 1 HETATM 4 O O3G ATP . . . O 3 113.321 105.399 133.433 1 200.76 ? O3G ATP 501 B 1 HETATM 5 P PB ATP . . . O 3 110.101 103.12 132.78 1 191.36 ? PB ATP 501 B 1 HETATM 6 O O1B ATP . . . O 3 109.622 103.787 131.513 1 191.64 ? O1B ATP 501 B 1 HETATM 7 O O2B ATP . . . O 3 109.14 102.965 133.935 1 189.44 ? O2B ATP 501 B 1 HETATM 8 O O3B ATP . . . O 3 111.412 103.862 133.35 1 194.65 ? O3B ATP 501 B 1 HETATM 9 P PA ATP . . . O 3 109.683 100.398 132.392 1 214.27 ? PA ATP 501 B 1 HETATM 10 O O1A ATP . . . O 3 108.401 100.853 131.748 1 214.62 ? O1A ATP 501 B 1 HETATM 11 O O2A ATP . . . O 3 109.659 99.817 133.785 1 213.08 ? O2A ATP 501 B 1 HETATM 12 O O3A ATP . . . O 3 110.675 101.665 132.396 1 203.33 ? O3A ATP 501 B 1 HETATM 13 O O5' ATP . . . O 3 110.375 99.33 131.408 1 219.53 ? O5' ATP 501 B 1 HETATM 14 C C5' ATP . . . O 3 109.67 98.152 131.005 1 222.71 ? C5' ATP 501 B 1 HETATM 15 C C4' ATP . . . O 3 109.658 97.133 132.146 1 223.87 ? C4' ATP 501 B 1 HETATM 16 O O4' ATP . . . O 3 108.406 97.145 132.849 1 222.79 ? O4' ATP 501 B 1 HETATM 17 C C3' ATP . . . O 3 109.871 95.694 131.679 1 226.14 ? C3' ATP 501 B 1 HETATM 18 O O3' ATP . . . O 3 111.187 95.242 132.022 1 227.86 ? O3' ATP 501 B 1 HETATM 19 C C2' ATP . . . O 3 108.783 94.888 132.37 1 225.91 ? C2' ATP 501 B 1 HETATM 20 O O2' ATP . . . O 3 109.277 93.693 132.986 1 229.13 ? O2' ATP 501 B 1 HETATM 21 C C1' ATP . . . O 3 108.203 95.843 133.412 1 223.13 ? C1' ATP 501 B 1 HETATM 22 N N9 ATP . . . O 3 106.778 95.581 133.802 1 222.2 ? N9 ATP 501 B 1 HETATM 23 C C8 ATP . . . O 3 105.939 94.627 133.328 1 222 ? C8 ATP 501 B 1 HETATM 24 N N7 ATP . . . O 3 104.73 94.685 133.943 1 220.82 ? N7 ATP 501 B 1 HETATM 25 C C5 ATP . . . O 3 104.77 95.685 134.832 1 220.66 ? C5 ATP 501 B 1 HETATM 26 C C6 ATP . . . O 3 103.828 96.282 135.812 1 219.47 ? C6 ATP 501 B 1 HETATM 27 N N6 ATP . . . O 3 102.574 95.809 135.958 1 217.6 ? N6 ATP 501 B 1 HETATM 28 N N1 ATP . . . O 3 104.263 97.32 136.563 1 221.61 ? N1 ATP 501 B 1 HETATM 29 C C2 ATP . . . O 3 105.513 97.809 136.438 1 223.12 ? C2 ATP 501 B 1 HETATM 30 N N3 ATP . . . O 3 106.417 97.317 135.56 1 222.16 ? N3 ATP 501 B 1 HETATM 31 C C4 ATP . . . O 3 106.12 96.269 134.745 1 221.84 ? C4 ATP 501 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 99 _model_server_stats.query_time_ms 574 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #