data_5XMY # _model_server_result.job_id dfyuQ3dQe5cDOOXdWdoauQ _model_server_result.datetime_utc '2025-08-31 18:58:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 5XMY # _exptl.entry_id 5XMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.16 _cell.angle_gamma 90 _cell.entry_id 5XMY _cell.length_a 26.982 _cell.length_b 48.096 _cell.length_c 52.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 3 P THR 3 1_555 B N M3L 4 P M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 B C M3L 4 P M3L 4 1_555 B N GLN 5 P GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 D C THR 3 D THR 3 1_555 D N M3L 4 D M3L 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C M3L 4 D M3L 4 1_555 D N GLN 5 D GLN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 16 A CYS 870 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A SG CYS 19 A CYS 873 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A SG CYS 31 A CYS 885 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 A SG CYS 34 A CYS 888 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 A ND1 HIS 39 A HIS 893 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 A SG CYS 42 A CYS 896 1_555 F ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc7 A SG CYS 57 A CYS 911 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc8 A SG CYS 60 A CYS 914 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc9 C SG CYS 16 C CYS 870 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc10 C SG CYS 19 C CYS 873 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc11 C SG CYS 31 C CYS 885 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc12 C SG CYS 34 C CYS 888 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc13 C ND1 HIS 39 C HIS 893 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc14 C SG CYS 42 C CYS 896 1_555 H ZN ZN . C ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc15 C SG CYS 57 C CYS 911 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc16 C SG CYS 60 C CYS 914 1_555 G ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XMY _atom_sites.fract_transf_matrix[1][1] 0.037062 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005317 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1001 1 ZN ZN . F 3 ZN A 1 1002 2 ZN ZN . G 3 ZN C 1 1001 3 ZN ZN . H 3 ZN C 1 1002 4 ZN ZN . I 4 HOH A 1 1101 49 HOH HOH . I 4 HOH A 2 1102 64 HOH HOH . I 4 HOH A 3 1103 89 HOH HOH . I 4 HOH A 4 1104 78 HOH HOH . I 4 HOH A 5 1105 12 HOH HOH . I 4 HOH A 6 1106 26 HOH HOH . I 4 HOH A 7 1107 22 HOH HOH . I 4 HOH A 8 1108 3 HOH HOH . I 4 HOH A 9 1109 46 HOH HOH . I 4 HOH A 10 1110 103 HOH HOH . I 4 HOH A 11 1111 77 HOH HOH . I 4 HOH A 12 1112 4 HOH HOH . I 4 HOH A 13 1113 9 HOH HOH . I 4 HOH A 14 1114 34 HOH HOH . I 4 HOH A 15 1115 55 HOH HOH . I 4 HOH A 16 1116 5 HOH HOH . I 4 HOH A 17 1117 11 HOH HOH . I 4 HOH A 18 1118 81 HOH HOH . I 4 HOH A 19 1119 45 HOH HOH . I 4 HOH A 20 1120 39 HOH HOH . I 4 HOH A 21 1121 23 HOH HOH . I 4 HOH A 22 1122 10 HOH HOH . I 4 HOH A 23 1123 32 HOH HOH . I 4 HOH A 24 1124 21 HOH HOH . I 4 HOH A 25 1125 73 HOH HOH . I 4 HOH A 26 1126 18 HOH HOH . I 4 HOH A 27 1127 13 HOH HOH . I 4 HOH A 28 1128 2 HOH HOH . I 4 HOH A 29 1129 42 HOH HOH . I 4 HOH A 30 1130 102 HOH HOH . I 4 HOH A 31 1131 91 HOH HOH . I 4 HOH A 32 1132 20 HOH HOH . I 4 HOH A 33 1133 1 HOH HOH . I 4 HOH A 34 1134 30 HOH HOH . I 4 HOH A 35 1135 56 HOH HOH . I 4 HOH A 36 1136 6 HOH HOH . I 4 HOH A 37 1137 54 HOH HOH . I 4 HOH A 38 1138 16 HOH HOH . I 4 HOH A 39 1139 43 HOH HOH . I 4 HOH A 40 1140 62 HOH HOH . I 4 HOH A 41 1141 76 HOH HOH . I 4 HOH A 42 1142 31 HOH HOH . I 4 HOH A 43 1143 68 HOH HOH . I 4 HOH A 44 1144 25 HOH HOH . I 4 HOH A 45 1145 41 HOH HOH . I 4 HOH A 46 1146 82 HOH HOH . I 4 HOH A 47 1147 53 HOH HOH . I 4 HOH A 48 1148 65 HOH HOH . I 4 HOH A 49 1149 69 HOH HOH . I 4 HOH A 50 1150 87 HOH HOH . I 4 HOH A 51 1151 48 HOH HOH . I 4 HOH A 52 1152 36 HOH HOH . I 4 HOH A 53 1153 106 HOH HOH . I 4 HOH A 54 1154 93 HOH HOH . I 4 HOH A 55 1155 66 HOH HOH . I 4 HOH A 56 1156 61 HOH HOH . I 4 HOH A 57 1157 83 HOH HOH . I 4 HOH A 58 1158 51 HOH HOH . I 4 HOH A 59 1159 107 HOH HOH . I 4 HOH A 60 1160 57 HOH HOH . I 4 HOH A 61 1161 72 HOH HOH . I 4 HOH A 62 1162 70 HOH HOH . I 4 HOH A 63 1163 50 HOH HOH . I 4 HOH A 64 1164 92 HOH HOH . I 4 HOH A 65 1165 99 HOH HOH . I 4 HOH A 66 1166 79 HOH HOH . J 4 HOH P 1 101 33 HOH HOH . J 4 HOH P 2 102 101 HOH HOH . J 4 HOH P 3 103 88 HOH HOH . J 4 HOH P 4 104 47 HOH HOH . K 4 HOH C 1 1101 40 HOH HOH . K 4 HOH C 2 1102 28 HOH HOH . K 4 HOH C 3 1103 14 HOH HOH . K 4 HOH C 4 1104 96 HOH HOH . K 4 HOH C 5 1105 19 HOH HOH . K 4 HOH C 6 1106 80 HOH HOH . K 4 HOH C 7 1107 98 HOH HOH . K 4 HOH C 8 1108 105 HOH HOH . K 4 HOH C 9 1109 17 HOH HOH . K 4 HOH C 10 1110 71 HOH HOH . K 4 HOH C 11 1111 44 HOH HOH . K 4 HOH C 12 1112 60 HOH HOH . K 4 HOH C 13 1113 59 HOH HOH . K 4 HOH C 14 1114 84 HOH HOH . K 4 HOH C 15 1115 29 HOH HOH . K 4 HOH C 16 1116 15 HOH HOH . K 4 HOH C 17 1117 27 HOH HOH . K 4 HOH C 18 1118 74 HOH HOH . K 4 HOH C 19 1119 37 HOH HOH . K 4 HOH C 20 1120 100 HOH HOH . K 4 HOH C 21 1121 63 HOH HOH . K 4 HOH C 22 1122 24 HOH HOH . K 4 HOH C 23 1123 85 HOH HOH . K 4 HOH C 24 1124 38 HOH HOH . K 4 HOH C 25 1125 8 HOH HOH . K 4 HOH C 26 1126 90 HOH HOH . K 4 HOH C 27 1127 97 HOH HOH . K 4 HOH C 28 1128 58 HOH HOH . K 4 HOH C 29 1129 94 HOH HOH . K 4 HOH C 30 1130 86 HOH HOH . K 4 HOH C 31 1131 67 HOH HOH . K 4 HOH C 32 1132 75 HOH HOH . L 4 HOH D 1 101 7 HOH HOH . L 4 HOH D 2 102 52 HOH HOH . L 4 HOH D 3 103 95 HOH HOH . L 4 HOH D 4 104 104 HOH HOH . L 4 HOH D 5 105 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.155 _atom_site.Cartn_y -5.39 _atom_site.Cartn_z 2.735 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 50 _model_server_stats.element_count 1 #