data_5XN7 # _model_server_result.job_id 8ZRk52gJWQt9NUCtHXwPyQ _model_server_result.datetime_utc '2025-08-31 19:52:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2905}' # _entry.id 5XN7 # _exptl.entry_id 5XN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.6 _cell.angle_gamma 90 _cell.entry_id 5XN7 _cell.length_a 124.743 _cell.length_b 185.185 _cell.length_c 81.365 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,L 1 1 B,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 54 A GLN 2336 1_555 A N MSE 55 A MSE 2337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 55 A MSE 2337 1_555 A N PRO 56 A PRO 2338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale3 A C LEU 93 A LEU 2375 1_555 A N MSE 94 A MSE 2376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C MSE 94 A MSE 2376 1_555 A N SER 95 A SER 2377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale5 A C ALA 164 A ALA 2446 1_555 A N MSE 165 A MSE 2447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 165 A MSE 2447 1_555 A N ASN 166 A ASN 2448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C HIS 292 A HIS 2574 1_555 A N MSE 293 A MSE 2575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 293 A MSE 2575 1_555 A N SER 294 A SER 2576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C THR 299 A THR 2581 1_555 A N MSE 300 A MSE 2582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 300 A MSE 2582 1_555 A N TYR 301 A TYR 2583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 A C ASP 436 A ASP 2718 1_555 A N MSE 437 A MSE 2719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MSE 437 A MSE 2719 1_555 A N LEU 438 A LEU 2720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C ASP 461 A ASP 2743 1_555 A N MSE 462 A MSE 2744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C MSE 462 A MSE 2744 1_555 A N MSE 463 A MSE 2745 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 A C MSE 463 A MSE 2745 1_555 A N ASP 464 A ASP 2746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 A C ALA 530 A ALA 2812 1_555 A N MSE 531 A MSE 2813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale17 A C MSE 531 A MSE 2813 1_555 A N GLN 532 A GLN 2814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C GLN 54 B GLN 2336 1_555 B N MSE 55 B MSE 2337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale19 B C MSE 55 B MSE 2337 1_555 B N PRO 56 B PRO 2338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale20 B C LEU 93 B LEU 2375 1_555 B N MSE 94 B MSE 2376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C MSE 94 B MSE 2376 1_555 B N SER 95 B SER 2377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B C ALA 164 B ALA 2446 1_555 B N MSE 165 B MSE 2447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 B C MSE 165 B MSE 2447 1_555 B N ASN 166 B ASN 2448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale24 B C HIS 292 B HIS 2574 1_555 B N MSE 293 B MSE 2575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale25 B C MSE 293 B MSE 2575 1_555 B N SER 294 B SER 2576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 B C THR 299 B THR 2581 1_555 B N MSE 300 B MSE 2582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale27 B C MSE 300 B MSE 2582 1_555 B N TYR 301 B TYR 2583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale28 B C ASP 436 B ASP 2718 1_555 B N MSE 437 B MSE 2719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale29 B C MSE 437 B MSE 2719 1_555 B N LEU 438 B LEU 2720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale30 B C ASP 461 B ASP 2743 1_555 B N MSE 462 B MSE 2744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale31 B C MSE 462 B MSE 2744 1_555 B N MSE 463 B MSE 2745 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale32 B C MSE 463 B MSE 2745 1_555 B N ASP 464 B ASP 2746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale33 B C ALA 530 B ALA 2812 1_555 B N MSE 531 B MSE 2813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale34 B C MSE 531 B MSE 2813 1_555 B N GLN 532 B GLN 2814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 97 n n C O2 FMT sing 98 n n C H FMT sing 99 n n O2 HO2 FMT sing 100 n n # _atom_sites.entry_id 5XN7 _atom_sites.fract_transf_matrix[1][1] 0.008016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000786 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DIO A 1 2901 1 DIO DIO . D 2 DIO A 1 2902 2 DIO DIO . E 3 SO4 A 1 2903 3 SO4 SO4 . F 4 MES A 1 2904 5 MES MES . G 5 FMT A 1 2905 6 FMT FMT . H 6 CL A 1 2906 7 CL CL . I 6 CL A 1 2907 9 CL CL . J 4 MES B 1 2901 4 MES MES . K 6 CL B 1 2902 8 CL CL . L 7 HOH A 1 3001 38 HOH HOH . L 7 HOH A 2 3002 60 HOH HOH . L 7 HOH A 3 3003 22 HOH HOH . L 7 HOH A 4 3004 53 HOH HOH . L 7 HOH A 5 3005 36 HOH HOH . L 7 HOH A 6 3006 7 HOH HOH . L 7 HOH A 7 3007 67 HOH HOH . L 7 HOH A 8 3008 71 HOH HOH . L 7 HOH A 9 3009 68 HOH HOH . L 7 HOH A 10 3010 41 HOH HOH . L 7 HOH A 11 3011 33 HOH HOH . L 7 HOH A 12 3012 74 HOH HOH . L 7 HOH A 13 3013 18 HOH HOH . L 7 HOH A 14 3014 70 HOH HOH . L 7 HOH A 15 3015 26 HOH HOH . L 7 HOH A 16 3016 16 HOH HOH . L 7 HOH A 17 3017 69 HOH HOH . L 7 HOH A 18 3018 5 HOH HOH . L 7 HOH A 19 3019 64 HOH HOH . L 7 HOH A 20 3020 15 HOH HOH . L 7 HOH A 21 3021 4 HOH HOH . L 7 HOH A 22 3022 1 HOH HOH . L 7 HOH A 23 3023 8 HOH HOH . L 7 HOH A 24 3024 6 HOH HOH . L 7 HOH A 25 3025 49 HOH HOH . L 7 HOH A 26 3026 23 HOH HOH . L 7 HOH A 27 3027 84 HOH HOH . L 7 HOH A 28 3028 30 HOH HOH . L 7 HOH A 29 3029 31 HOH HOH . L 7 HOH A 30 3030 32 HOH HOH . L 7 HOH A 31 3031 51 HOH HOH . L 7 HOH A 32 3032 43 HOH HOH . L 7 HOH A 33 3033 73 HOH HOH . L 7 HOH A 34 3034 17 HOH HOH . L 7 HOH A 35 3035 12 HOH HOH . L 7 HOH A 36 3036 57 HOH HOH . L 7 HOH A 37 3037 83 HOH HOH . L 7 HOH A 38 3038 2 HOH HOH . L 7 HOH A 39 3039 81 HOH HOH . L 7 HOH A 40 3040 14 HOH HOH . L 7 HOH A 41 3041 19 HOH HOH . L 7 HOH A 42 3042 40 HOH HOH . L 7 HOH A 43 3043 86 HOH HOH . L 7 HOH A 44 3044 10 HOH HOH . L 7 HOH A 45 3045 85 HOH HOH . L 7 HOH A 46 3046 65 HOH HOH . L 7 HOH A 47 3047 89 HOH HOH . L 7 HOH A 48 3048 3 HOH HOH . L 7 HOH A 49 3049 24 HOH HOH . L 7 HOH A 50 3050 87 HOH HOH . L 7 HOH A 51 3051 61 HOH HOH . L 7 HOH A 52 3052 27 HOH HOH . L 7 HOH A 53 3053 42 HOH HOH . L 7 HOH A 54 3054 78 HOH HOH . L 7 HOH A 55 3055 66 HOH HOH . L 7 HOH A 56 3056 59 HOH HOH . L 7 HOH A 57 3057 21 HOH HOH . L 7 HOH A 58 3058 79 HOH HOH . L 7 HOH A 59 3059 48 HOH HOH . L 7 HOH A 60 3060 29 HOH HOH . M 7 HOH B 1 3001 45 HOH HOH . M 7 HOH B 2 3002 46 HOH HOH . M 7 HOH B 3 3003 20 HOH HOH . M 7 HOH B 4 3004 35 HOH HOH . M 7 HOH B 5 3005 9 HOH HOH . M 7 HOH B 6 3006 54 HOH HOH . M 7 HOH B 7 3007 56 HOH HOH . M 7 HOH B 8 3008 72 HOH HOH . M 7 HOH B 9 3009 34 HOH HOH . M 7 HOH B 10 3010 28 HOH HOH . M 7 HOH B 11 3011 58 HOH HOH . M 7 HOH B 12 3012 62 HOH HOH . M 7 HOH B 13 3013 88 HOH HOH . M 7 HOH B 14 3014 52 HOH HOH . M 7 HOH B 15 3015 44 HOH HOH . M 7 HOH B 16 3016 37 HOH HOH . M 7 HOH B 17 3017 47 HOH HOH . M 7 HOH B 18 3018 39 HOH HOH . M 7 HOH B 19 3019 13 HOH HOH . M 7 HOH B 20 3020 55 HOH HOH . M 7 HOH B 21 3021 75 HOH HOH . M 7 HOH B 22 3022 77 HOH HOH . M 7 HOH B 23 3023 11 HOH HOH . M 7 HOH B 24 3024 80 HOH HOH . M 7 HOH B 25 3025 50 HOH HOH . M 7 HOH B 26 3026 25 HOH HOH . M 7 HOH B 27 3027 82 HOH HOH . M 7 HOH B 28 3028 76 HOH HOH . M 7 HOH B 29 3029 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . G 5 52.682 24.783 35.473 1 60.25 ? C FMT 2905 A 1 HETATM 2 O O1 FMT . . . G 5 53.609 24.231 34.877 1 62.38 ? O1 FMT 2905 A 1 HETATM 3 O O2 FMT . . . G 5 52.644 26.114 35.602 1 54.64 ? O2 FMT 2905 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 89 _model_server_stats.query_time_ms 512 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #