data_5XNH # _model_server_result.job_id 7XaQPyBjkJMgQ1b7LwSbEA _model_server_result.datetime_utc '2024-11-13 06:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5XNH # _exptl.entry_id 5XNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.16 _cell.angle_gamma 90 _cell.entry_id 5XNH _cell.length_a 52.869 _cell.length_b 78.783 _cell.length_c 79.407 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 111 A CYS 91 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A SG CYS 114 A CYS 94 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 C FE FE . A FE 401 1_555 B SG CYS 111 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 C FE FE . A FE 401 1_555 B SG CYS 114 H CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5XNH _atom_sites.fract_transf_matrix[1][1] 0.018915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000052 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 401 1 FE FE . D 3 SPD A 1 402 1 SPD SPD . E 3 SPD H 1 401 2 SPD SPD . F 4 HOH A 1 501 109 HOH HOH . F 4 HOH A 2 502 132 HOH HOH . F 4 HOH A 3 503 76 HOH HOH . F 4 HOH A 4 504 78 HOH HOH . F 4 HOH A 5 505 75 HOH HOH . F 4 HOH A 6 506 149 HOH HOH . F 4 HOH A 7 507 89 HOH HOH . F 4 HOH A 8 508 69 HOH HOH . F 4 HOH A 9 509 36 HOH HOH . F 4 HOH A 10 510 21 HOH HOH . F 4 HOH A 11 511 13 HOH HOH . F 4 HOH A 12 512 91 HOH HOH . F 4 HOH A 13 513 122 HOH HOH . F 4 HOH A 14 514 116 HOH HOH . F 4 HOH A 15 515 77 HOH HOH . F 4 HOH A 16 516 106 HOH HOH . F 4 HOH A 17 517 101 HOH HOH . F 4 HOH A 18 518 37 HOH HOH . F 4 HOH A 19 519 127 HOH HOH . F 4 HOH A 20 520 124 HOH HOH . F 4 HOH A 21 521 23 HOH HOH . F 4 HOH A 22 522 15 HOH HOH . F 4 HOH A 23 523 44 HOH HOH . F 4 HOH A 24 524 38 HOH HOH . F 4 HOH A 25 525 131 HOH HOH . F 4 HOH A 26 526 25 HOH HOH . F 4 HOH A 27 527 34 HOH HOH . F 4 HOH A 28 528 100 HOH HOH . F 4 HOH A 29 529 126 HOH HOH . F 4 HOH A 30 530 103 HOH HOH . F 4 HOH A 31 531 52 HOH HOH . F 4 HOH A 32 532 8 HOH HOH . F 4 HOH A 33 533 107 HOH HOH . F 4 HOH A 34 534 32 HOH HOH . F 4 HOH A 35 535 74 HOH HOH . F 4 HOH A 36 536 82 HOH HOH . F 4 HOH A 37 537 80 HOH HOH . F 4 HOH A 38 538 40 HOH HOH . F 4 HOH A 39 539 3 HOH HOH . F 4 HOH A 40 540 156 HOH HOH . F 4 HOH A 41 541 123 HOH HOH . F 4 HOH A 42 542 22 HOH HOH . F 4 HOH A 43 543 53 HOH HOH . F 4 HOH A 44 544 73 HOH HOH . F 4 HOH A 45 545 79 HOH HOH . F 4 HOH A 46 546 102 HOH HOH . F 4 HOH A 47 547 67 HOH HOH . F 4 HOH A 48 548 104 HOH HOH . F 4 HOH A 49 549 7 HOH HOH . F 4 HOH A 50 550 27 HOH HOH . F 4 HOH A 51 551 28 HOH HOH . F 4 HOH A 52 552 54 HOH HOH . F 4 HOH A 53 553 146 HOH HOH . F 4 HOH A 54 554 121 HOH HOH . F 4 HOH A 55 555 108 HOH HOH . F 4 HOH A 56 556 6 HOH HOH . F 4 HOH A 57 557 88 HOH HOH . F 4 HOH A 58 558 113 HOH HOH . F 4 HOH A 59 559 24 HOH HOH . F 4 HOH A 60 560 90 HOH HOH . F 4 HOH A 61 561 164 HOH HOH . F 4 HOH A 62 562 81 HOH HOH . F 4 HOH A 63 563 70 HOH HOH . F 4 HOH A 64 564 63 HOH HOH . F 4 HOH A 65 565 128 HOH HOH . F 4 HOH A 66 566 45 HOH HOH . F 4 HOH A 67 567 105 HOH HOH . F 4 HOH A 68 568 65 HOH HOH . F 4 HOH A 69 569 158 HOH HOH . F 4 HOH A 70 570 41 HOH HOH . F 4 HOH A 71 571 144 HOH HOH . F 4 HOH A 72 572 4 HOH HOH . F 4 HOH A 73 573 92 HOH HOH . F 4 HOH A 74 574 145 HOH HOH . F 4 HOH A 75 575 129 HOH HOH . F 4 HOH A 76 576 133 HOH HOH . F 4 HOH A 77 577 66 HOH HOH . F 4 HOH A 78 578 62 HOH HOH . F 4 HOH A 79 579 139 HOH HOH . F 4 HOH A 80 580 154 HOH HOH . F 4 HOH A 81 581 147 HOH HOH . F 4 HOH A 82 582 148 HOH HOH . F 4 HOH A 83 583 58 HOH HOH . F 4 HOH A 84 584 157 HOH HOH . F 4 HOH A 85 585 159 HOH HOH . F 4 HOH A 86 586 72 HOH HOH . F 4 HOH A 87 587 55 HOH HOH . F 4 HOH A 88 588 71 HOH HOH . G 4 HOH H 1 501 84 HOH HOH . G 4 HOH H 2 502 110 HOH HOH . G 4 HOH H 3 503 57 HOH HOH . G 4 HOH H 4 504 30 HOH HOH . G 4 HOH H 5 505 95 HOH HOH . G 4 HOH H 6 506 161 HOH HOH . G 4 HOH H 7 507 12 HOH HOH . G 4 HOH H 8 508 94 HOH HOH . G 4 HOH H 9 509 111 HOH HOH . G 4 HOH H 10 510 83 HOH HOH . G 4 HOH H 11 511 99 HOH HOH . G 4 HOH H 12 512 42 HOH HOH . G 4 HOH H 13 513 20 HOH HOH . G 4 HOH H 14 514 142 HOH HOH . G 4 HOH H 15 515 120 HOH HOH . G 4 HOH H 16 516 43 HOH HOH . G 4 HOH H 17 517 31 HOH HOH . G 4 HOH H 18 518 93 HOH HOH . G 4 HOH H 19 519 18 HOH HOH . G 4 HOH H 20 520 56 HOH HOH . G 4 HOH H 21 521 39 HOH HOH . G 4 HOH H 22 522 152 HOH HOH . G 4 HOH H 23 523 26 HOH HOH . G 4 HOH H 24 524 14 HOH HOH . G 4 HOH H 25 525 135 HOH HOH . G 4 HOH H 26 526 9 HOH HOH . G 4 HOH H 27 527 49 HOH HOH . G 4 HOH H 28 528 17 HOH HOH . G 4 HOH H 29 529 1 HOH HOH . G 4 HOH H 30 530 114 HOH HOH . G 4 HOH H 31 531 10 HOH HOH . G 4 HOH H 32 532 155 HOH HOH . G 4 HOH H 33 533 2 HOH HOH . G 4 HOH H 34 534 11 HOH HOH . G 4 HOH H 35 535 118 HOH HOH . G 4 HOH H 36 536 112 HOH HOH . G 4 HOH H 37 537 140 HOH HOH . G 4 HOH H 38 538 59 HOH HOH . G 4 HOH H 39 539 136 HOH HOH . G 4 HOH H 40 540 33 HOH HOH . G 4 HOH H 41 541 51 HOH HOH . G 4 HOH H 42 542 87 HOH HOH . G 4 HOH H 43 543 119 HOH HOH . G 4 HOH H 44 544 19 HOH HOH . G 4 HOH H 45 545 96 HOH HOH . G 4 HOH H 46 546 5 HOH HOH . G 4 HOH H 47 547 35 HOH HOH . G 4 HOH H 48 548 16 HOH HOH . G 4 HOH H 49 549 160 HOH HOH . G 4 HOH H 50 550 150 HOH HOH . G 4 HOH H 51 551 29 HOH HOH . G 4 HOH H 52 552 47 HOH HOH . G 4 HOH H 53 553 50 HOH HOH . G 4 HOH H 54 554 151 HOH HOH . G 4 HOH H 55 555 98 HOH HOH . G 4 HOH H 56 556 141 HOH HOH . G 4 HOH H 57 557 117 HOH HOH . G 4 HOH H 58 558 48 HOH HOH . G 4 HOH H 59 559 64 HOH HOH . G 4 HOH H 60 560 138 HOH HOH . G 4 HOH H 61 561 97 HOH HOH . G 4 HOH H 62 562 85 HOH HOH . G 4 HOH H 63 563 86 HOH HOH . G 4 HOH H 64 564 46 HOH HOH . G 4 HOH H 65 565 130 HOH HOH . G 4 HOH H 66 566 60 HOH HOH . G 4 HOH H 67 567 163 HOH HOH . G 4 HOH H 68 568 162 HOH HOH . G 4 HOH H 69 569 134 HOH HOH . G 4 HOH H 70 570 143 HOH HOH . G 4 HOH H 71 571 137 HOH HOH . G 4 HOH H 72 572 153 HOH HOH . G 4 HOH H 73 573 125 HOH HOH . G 4 HOH H 74 574 61 HOH HOH . G 4 HOH H 75 575 68 HOH HOH . G 4 HOH H 76 576 115 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -25.449 _atom_site.Cartn_y 6.067 _atom_site.Cartn_z -19.599 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 25.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #