data_5XNJ # _model_server_result.job_id 4PJtmn8owOf6AFyNR9wyug _model_server_result.datetime_utc '2024-10-10 06:21:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5XNJ # _exptl.entry_id 5XNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XNJ _cell.length_a 129.247 _cell.length_b 129.247 _cell.length_c 44.292 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 14.764 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 102 n n N H GLU sing 103 n n N H2 GLU sing 104 n n CA C GLU sing 105 n n CA CB GLU sing 106 n n CA HA GLU sing 107 n n C O GLU doub 108 n n C OXT GLU sing 109 n n CB CG GLU sing 110 n n CB HB2 GLU sing 111 n n CB HB3 GLU sing 112 n n CG CD GLU sing 113 n n CG HG2 GLU sing 114 n n CG HG3 GLU sing 115 n n CD OE1 GLU doub 116 n n CD OE2 GLU sing 117 n n OE2 HE2 GLU sing 118 n n OXT HXT GLU sing 119 n n # _atom_sites.entry_id 5XNJ _atom_sites.fract_transf_matrix[1][1] 0.007737 _atom_sites.fract_transf_matrix[1][2] 0.004467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLU A 1 301 1 GLU GLU . C 3 HOH A 1 401 8 HOH HOH . C 3 HOH A 2 402 3 HOH HOH . C 3 HOH A 3 403 1 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 6 HOH HOH . C 3 HOH A 6 406 9 HOH HOH . C 3 HOH A 7 407 11 HOH HOH . C 3 HOH A 8 408 7 HOH HOH . C 3 HOH A 9 409 5 HOH HOH . C 3 HOH A 10 410 12 HOH HOH . C 3 HOH A 11 411 2 HOH HOH . C 3 HOH A 12 412 13 HOH HOH . C 3 HOH A 13 413 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . B 2 -60.608 14.351 13.444 1 78.67 ? N GLU 301 A 1 HETATM 2 C CA GLU . . . B 2 -60.867 15.832 13.399 1 77.3 ? CA GLU 301 A 1 HETATM 3 C C GLU . . . B 2 -59.875 16.482 12.504 1 68.41 ? C GLU 301 A 1 HETATM 4 O O GLU . . . B 2 -60.081 16.519 11.304 1 72.52 ? O GLU 301 A 1 HETATM 5 C CB GLU . . . B 2 -60.909 16.529 14.786 1 86.71 ? CB GLU 301 A 1 HETATM 6 C CG GLU . . . B 2 -60.202 15.886 15.994 1 93.25 ? CG GLU 301 A 1 HETATM 7 C CD GLU . . . B 2 -58.934 15.096 15.674 1 94.4 ? CD GLU 301 A 1 HETATM 8 O OE1 GLU . . . B 2 -58.111 15.539 14.851 1 92.4 ? OE1 GLU 301 A 1 HETATM 9 O OE2 GLU . . . B 2 -58.766 13.996 16.244 1 89.4 ? OE2 GLU 301 A 1 HETATM 10 O OXT GLU . . . B 2 -58.845 16.949 12.932 1 72.49 ? OXT GLU 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #