data_5XNK # _model_server_result.job_id PHhKBX0q-kvyixSxMpDYqg _model_server_result.datetime_utc '2024-12-01 05:51:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5XNK # _exptl.entry_id 5XNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S)-3-methyl-aspartic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XNK _cell.length_a 129.046 _cell.length_b 129.046 _cell.length_c 43.898 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 29.265333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C 2AS . A 2AS 301 1_555 C OXT ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.282 ? covale ? covale2 B C 2AS . A 2AS 301 1_555 C CA ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? covale ? covale3 B CA 2AS . A 2AS 301 1_555 C C ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.574 ? covale ? covale4 B CA 2AS . A 2AS 301 1_555 C CA ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 B CA 2AS . A 2AS 301 1_555 C CB ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale6 B CB 2AS . A 2AS 301 1_555 C CG ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? covale ? covale7 B CG 2AS . A 2AS 301 1_555 C CB ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale8 B C4 2AS . A 2AS 301 1_555 C CB ACB . A ACB 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id 2AS _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S)-3-methyl-aspartic acid' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 2AS doub 1 n n C CA 2AS sing 2 n n C OXT 2AS sing 3 n n CA N 2AS sing 4 n n CA CB 2AS sing 5 n n CA HA 2AS sing 6 n n N H 2AS sing 7 n n N H2 2AS sing 8 n n CB CG 2AS sing 9 n n CB C4 2AS sing 10 n n CB HB2 2AS sing 11 n n CG OD1 2AS sing 12 n n CG OD2 2AS doub 13 n n C4 H4 2AS sing 14 n n C4 H4A 2AS sing 15 n n C4 H4B 2AS sing 16 n n OD1 HD2 2AS sing 17 n n OXT HXT 2AS sing 18 n n # _atom_sites.entry_id 5XNK _atom_sites.fract_transf_matrix[1][1] 0.007749 _atom_sites.fract_transf_matrix[1][2] 0.004474 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02278 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2AS A 1 301 1 2AS 2AS . C 3 ACB A 1 302 1 ACB ACB . D 4 HOH A 1 401 4 HOH HOH . D 4 HOH A 2 402 1 HOH HOH . D 4 HOH A 3 403 2 HOH HOH . D 4 HOH A 4 404 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2AS . . . B 2 44.557 -43.406 9.609 0.5 153.93 ? C 2AS 301 A 1 HETATM 2 O O 2AS . . . B 2 43.893 -42.42 9.274 0.5 153.2 ? O 2AS 301 A 1 HETATM 3 C CA 2AS . . . B 2 44.744 -44.514 8.635 0.5 155.54 ? CA 2AS 301 A 1 HETATM 4 N N 2AS . . . B 2 43.936 -45.615 9.098 0.5 155.72 ? N 2AS 301 A 1 HETATM 5 C CB 2AS . . . B 2 44.292 -44.135 7.23 0.5 154.98 ? CB 2AS 301 A 1 HETATM 6 C CG 2AS . . . B 2 42.801 -44.12 7.165 0.5 156.61 ? CG 2AS 301 A 1 HETATM 7 O OD1 2AS . . . B 2 42.192 -44.941 7.872 0.5 154.28 ? OD1 2AS 301 A 1 HETATM 8 C C4 2AS . . . B 2 44.852 -42.793 6.78 0.5 153.9 ? C4 2AS 301 A 1 HETATM 9 O OD2 2AS . . . B 2 42.233 -43.309 6.412 0.5 160.58 ? OD2 2AS 301 A 1 HETATM 10 O OXT 2AS . . . B 2 45.063 -43.524 10.736 0.5 150.74 ? OXT 2AS 301 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #