data_5XPE
#
_model_server_result.job_id            ubulPamMn7nO-JU_ONdTVg 
_model_server_result.datetime_utc      '2024-10-13 08:15:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xpe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5XPE 
#
loop_
_exptl.entry_id
_exptl.method
5XPE 'X-RAY DIFFRACTION' 
5XPE 'NEUTRON DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5XPE 
_cell.length_a            61.23 
_cell.length_b            61.23 
_cell.length_c            96.791 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XPE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 30 A GLY 30 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc2 A O PHE 104 A PHE 104 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc3 B NA NA . A NA 201 1_555 F O DOD . A DOD 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc4 B NA NA . A NA 201 1_555 F O DOD . A DOD 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc5 B NA NA . A NA 201 1_555 F O DOD . A DOD 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XPE 
_atom_sites.fract_transf_matrix[1][1]    0.016332 
_atom_sites.fract_transf_matrix[1][2]    0.009429 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018858 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010332 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 201 2 NA NA . 
C 3 CL A 1 202 3 CL CL . 
D 3 CL A 1 203 4 CL CL . 
E 3 CL A 1 204 5 CL CL . 
F 4 DOD A 1 301 57 DOD HOH . 
F 4 DOD A 2 302 82 DOD HOH . 
F 4 DOD A 3 303 34 DOD HOH . 
F 4 DOD A 4 304 41 DOD HOH . 
F 4 DOD A 5 305 53 DOD HOH . 
F 4 DOD A 6 306 73 DOD HOH . 
F 4 DOD A 7 307 17 DOD HOH . 
F 4 DOD A 8 308 58 DOD HOH . 
F 4 DOD A 9 309 19 DOD HOH . 
F 4 DOD A 10 310 70 DOD HOH . 
F 4 DOD A 11 311 42 DOD HOH . 
F 4 DOD A 12 312 12 DOD HOH . 
F 4 DOD A 13 313 20 DOD HOH . 
F 4 DOD A 14 314 35 DOD HOH . 
F 4 DOD A 15 315 38 DOD HOH . 
F 4 DOD A 16 316 54 DOD HOH . 
F 4 DOD A 17 317 79 DOD HOH . 
F 4 DOD A 18 318 1 DOD HOH . 
F 4 DOD A 19 319 32 DOD HOH . 
F 4 DOD A 20 320 9 DOD HOH . 
F 4 DOD A 21 321 4 DOD HOH . 
F 4 DOD A 22 322 48 DOD HOH . 
F 4 DOD A 23 323 63 DOD HOH . 
F 4 DOD A 24 324 10 DOD HOH . 
F 4 DOD A 25 325 33 DOD HOH . 
F 4 DOD A 26 326 50 DOD HOH . 
F 4 DOD A 27 327 3 DOD HOH . 
F 4 DOD A 28 328 69 DOD HOH . 
F 4 DOD A 29 329 15 DOD HOH . 
F 4 DOD A 30 330 61 DOD HOH . 
F 4 DOD A 31 331 44 DOD HOH . 
F 4 DOD A 32 332 64 DOD HOH . 
F 4 DOD A 33 333 77 DOD HOH . 
F 4 DOD A 34 334 76 DOD HOH . 
F 4 DOD A 35 335 37 DOD HOH . 
F 4 DOD A 36 336 18 DOD HOH . 
F 4 DOD A 37 337 6 DOD HOH . 
F 4 DOD A 38 338 78 DOD HOH . 
F 4 DOD A 39 339 49 DOD HOH . 
F 4 DOD A 40 340 71 DOD HOH . 
F 4 DOD A 41 341 56 DOD HOH . 
F 4 DOD A 42 342 72 DOD HOH . 
F 4 DOD A 43 343 36 DOD HOH . 
F 4 DOD A 44 344 14 DOD HOH . 
F 4 DOD A 45 345 22 DOD HOH . 
F 4 DOD A 46 346 28 DOD HOH . 
F 4 DOD A 47 347 27 DOD HOH . 
F 4 DOD A 48 348 39 DOD HOH . 
F 4 DOD A 49 349 8 DOD HOH . 
F 4 DOD A 50 350 13 DOD HOH . 
F 4 DOD A 51 351 11 DOD HOH . 
F 4 DOD A 52 352 43 DOD HOH . 
F 4 DOD A 53 353 75 DOD HOH . 
F 4 DOD A 54 354 59 DOD HOH . 
F 4 DOD A 55 355 68 DOD HOH . 
F 4 DOD A 56 356 65 DOD HOH . 
F 4 DOD A 57 357 55 DOD HOH . 
F 4 DOD A 58 358 47 DOD HOH . 
F 4 DOD A 59 359 31 DOD HOH . 
F 4 DOD A 60 360 74 DOD HOH . 
F 4 DOD A 61 361 62 DOD HOH . 
F 4 DOD A 62 362 86 DOD HOH . 
F 4 DOD A 63 363 29 DOD HOH . 
F 4 DOD A 64 364 7 DOD HOH . 
F 4 DOD A 65 365 5 DOD HOH . 
F 4 DOD A 66 366 21 DOD HOH . 
F 4 DOD A 67 367 40 DOD HOH . 
F 4 DOD A 68 368 84 DOD HOH . 
F 4 DOD A 69 369 52 DOD HOH . 
F 4 DOD A 70 370 66 DOD HOH . 
F 4 DOD A 71 371 30 DOD HOH . 
F 4 DOD A 72 372 67 DOD HOH . 
F 4 DOD A 73 373 85 DOD HOH . 
F 4 DOD A 74 374 2 DOD HOH . 
F 4 DOD A 75 375 51 DOD HOH . 
F 4 DOD A 76 376 26 DOD HOH . 
F 4 DOD A 77 377 83 DOD HOH . 
F 4 DOD A 78 378 60 DOD HOH . 
F 4 DOD A 79 379 23 DOD HOH . 
F 4 DOD A 80 380 16 DOD HOH . 
F 4 DOD A 81 381 24 DOD HOH . 
F 4 DOD A 82 382 80 DOD HOH . 
F 4 DOD A 83 383 25 DOD HOH . 
F 4 DOD A 84 384 46 DOD HOH . 
F 4 DOD A 85 385 81 DOD HOH . 
F 4 DOD A 86 386 45 DOD HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -26.032 
_atom_site.Cartn_y               15.221 
_atom_site.Cartn_z               13.374 
_atom_site.occupancy             0.57 
_atom_site.B_iso_or_equiv        33.46 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              108 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#