data_5XPI # _model_server_result.job_id Jq6HbbNyJRGtSWbA6TymWQ _model_server_result.datetime_utc '2024-12-13 13:37:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5XPI # _exptl.entry_id 5XPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.488 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-(diethylamino)propyl]-2-(12-methyl-9-oxidanylidene-5-thia-1,10,11-triazatricyclo[6.4.0.0^2,6]dodeca-2(6),3,7,11-tetraen-10-yl)ethanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XPI _cell.length_a 99.001 _cell.length_b 99.001 _cell.length_c 41.315 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H25 N5 O2 S' _chem_comp.formula_weight 375.488 _chem_comp.id 8C3 _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-(diethylamino)propyl]-2-(12-methyl-9-oxidanylidene-5-thia-1,10,11-triazatricyclo[6.4.0.0^2,6]dodeca-2(6),3,7,11-tetraen-10-yl)ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 S1 8C3 sing 1 n y C10 C8 8C3 doub 2 n y S1 C6 8C3 sing 3 n y C8 C5 8C3 sing 4 n y C6 C5 8C3 doub 5 n y C6 C4 8C3 sing 6 n y C5 N1 8C3 sing 7 n y C4 C1 8C3 doub 8 n y N1 C1 8C3 sing 9 n y N1 C3 8C3 sing 10 n n C1 C2 8C3 sing 11 n n C11 C3 8C3 sing 12 n n C3 N3 8C3 doub 13 n n C2 O1 8C3 doub 14 n n C2 N2 8C3 sing 15 n n N3 N2 8C3 sing 16 n n N2 C7 8C3 sing 17 n n C7 C9 8C3 sing 18 n n O2 C9 8C3 doub 19 n n C9 N4 8C3 sing 20 n n N4 C13 8C3 sing 21 n n C13 C12 8C3 sing 22 n n C12 C14 8C3 sing 23 n n C14 N5 8C3 sing 24 n n N5 C15 8C3 sing 25 n n N5 C16 8C3 sing 26 n n C17 C15 8C3 sing 27 n n C18 C16 8C3 sing 28 n n C11 H1 8C3 sing 29 n n C11 H2 8C3 sing 30 n n C11 H3 8C3 sing 31 n n C12 H4 8C3 sing 32 n n C12 H5 8C3 sing 33 n n C13 H6 8C3 sing 34 n n C13 H7 8C3 sing 35 n n C14 H8 8C3 sing 36 n n C14 H9 8C3 sing 37 n n C15 H10 8C3 sing 38 n n C15 H11 8C3 sing 39 n n C16 H12 8C3 sing 40 n n C16 H13 8C3 sing 41 n n C17 H14 8C3 sing 42 n n C17 H15 8C3 sing 43 n n C17 H16 8C3 sing 44 n n C18 H17 8C3 sing 45 n n C18 H18 8C3 sing 46 n n C18 H19 8C3 sing 47 n n C4 H20 8C3 sing 48 n n C7 H21 8C3 sing 49 n n C7 H22 8C3 sing 50 n n C8 H23 8C3 sing 51 n n C10 H24 8C3 sing 52 n n N4 H25 8C3 sing 53 n n # _atom_sites.entry_id 5XPI _atom_sites.fract_transf_matrix[1][1] 0.010101 _atom_sites.fract_transf_matrix[1][2] 0.005832 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8C3 A 1 301 1 8C3 LI1 . C 3 HOH A 1 401 11 HOH HOH . C 3 HOH A 2 402 15 HOH HOH . C 3 HOH A 3 403 13 HOH HOH . C 3 HOH A 4 404 100 HOH HOH . C 3 HOH A 5 405 88 HOH HOH . C 3 HOH A 6 406 85 HOH HOH . C 3 HOH A 7 407 12 HOH HOH . C 3 HOH A 8 408 19 HOH HOH . C 3 HOH A 9 409 8 HOH HOH . C 3 HOH A 10 410 2 HOH HOH . C 3 HOH A 11 411 55 HOH HOH . C 3 HOH A 12 412 6 HOH HOH . C 3 HOH A 13 413 25 HOH HOH . C 3 HOH A 14 414 40 HOH HOH . C 3 HOH A 15 415 97 HOH HOH . C 3 HOH A 16 416 20 HOH HOH . C 3 HOH A 17 417 92 HOH HOH . C 3 HOH A 18 418 56 HOH HOH . C 3 HOH A 19 419 27 HOH HOH . C 3 HOH A 20 420 36 HOH HOH . C 3 HOH A 21 421 95 HOH HOH . C 3 HOH A 22 422 115 HOH HOH . C 3 HOH A 23 423 65 HOH HOH . C 3 HOH A 24 424 81 HOH HOH . C 3 HOH A 25 425 3 HOH HOH . C 3 HOH A 26 426 80 HOH HOH . C 3 HOH A 27 427 9 HOH HOH . C 3 HOH A 28 428 91 HOH HOH . C 3 HOH A 29 429 5 HOH HOH . C 3 HOH A 30 430 4 HOH HOH . C 3 HOH A 31 431 61 HOH HOH . C 3 HOH A 32 432 14 HOH HOH . C 3 HOH A 33 433 43 HOH HOH . C 3 HOH A 34 434 7 HOH HOH . C 3 HOH A 35 435 23 HOH HOH . C 3 HOH A 36 436 29 HOH HOH . C 3 HOH A 37 437 26 HOH HOH . C 3 HOH A 38 438 39 HOH HOH . C 3 HOH A 39 439 37 HOH HOH . C 3 HOH A 40 440 76 HOH HOH . C 3 HOH A 41 441 84 HOH HOH . C 3 HOH A 42 442 38 HOH HOH . C 3 HOH A 43 443 1 HOH HOH . C 3 HOH A 44 444 86 HOH HOH . C 3 HOH A 45 445 47 HOH HOH . C 3 HOH A 46 446 82 HOH HOH . C 3 HOH A 47 447 17 HOH HOH . C 3 HOH A 48 448 18 HOH HOH . C 3 HOH A 49 449 48 HOH HOH . C 3 HOH A 50 450 79 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 35 HOH HOH . C 3 HOH A 53 453 50 HOH HOH . C 3 HOH A 54 454 63 HOH HOH . C 3 HOH A 55 455 52 HOH HOH . C 3 HOH A 56 456 30 HOH HOH . C 3 HOH A 57 457 34 HOH HOH . C 3 HOH A 58 458 33 HOH HOH . C 3 HOH A 59 459 44 HOH HOH . C 3 HOH A 60 460 21 HOH HOH . C 3 HOH A 61 461 22 HOH HOH . C 3 HOH A 62 462 87 HOH HOH . C 3 HOH A 63 463 109 HOH HOH . C 3 HOH A 64 464 93 HOH HOH . C 3 HOH A 65 465 46 HOH HOH . C 3 HOH A 66 466 45 HOH HOH . C 3 HOH A 67 467 94 HOH HOH . C 3 HOH A 68 468 24 HOH HOH . C 3 HOH A 69 469 28 HOH HOH . C 3 HOH A 70 470 41 HOH HOH . C 3 HOH A 71 471 68 HOH HOH . C 3 HOH A 72 472 42 HOH HOH . C 3 HOH A 73 473 54 HOH HOH . C 3 HOH A 74 474 103 HOH HOH . C 3 HOH A 75 475 89 HOH HOH . C 3 HOH A 76 476 78 HOH HOH . C 3 HOH A 77 477 59 HOH HOH . C 3 HOH A 78 478 83 HOH HOH . C 3 HOH A 79 479 16 HOH HOH . C 3 HOH A 80 480 72 HOH HOH . C 3 HOH A 81 481 105 HOH HOH . C 3 HOH A 82 482 10 HOH HOH . C 3 HOH A 83 483 101 HOH HOH . C 3 HOH A 84 484 75 HOH HOH . C 3 HOH A 85 485 108 HOH HOH . C 3 HOH A 86 486 116 HOH HOH . C 3 HOH A 87 487 64 HOH HOH . C 3 HOH A 88 488 90 HOH HOH . C 3 HOH A 89 489 77 HOH HOH . C 3 HOH A 90 490 71 HOH HOH . C 3 HOH A 91 491 67 HOH HOH . C 3 HOH A 92 492 49 HOH HOH . C 3 HOH A 93 493 70 HOH HOH . C 3 HOH A 94 494 58 HOH HOH . C 3 HOH A 95 495 102 HOH HOH . C 3 HOH A 96 496 31 HOH HOH . C 3 HOH A 97 497 69 HOH HOH . C 3 HOH A 98 498 104 HOH HOH . C 3 HOH A 99 499 74 HOH HOH . C 3 HOH A 100 500 60 HOH HOH . C 3 HOH A 101 501 99 HOH HOH . C 3 HOH A 102 502 96 HOH HOH . C 3 HOH A 103 503 107 HOH HOH . C 3 HOH A 104 504 32 HOH HOH . C 3 HOH A 105 505 110 HOH HOH . C 3 HOH A 106 506 62 HOH HOH . C 3 HOH A 107 507 106 HOH HOH . C 3 HOH A 108 508 114 HOH HOH . C 3 HOH A 109 509 112 HOH HOH . C 3 HOH A 110 510 57 HOH HOH . C 3 HOH A 111 511 98 HOH HOH . C 3 HOH A 112 512 111 HOH HOH . C 3 HOH A 113 513 66 HOH HOH . C 3 HOH A 114 514 73 HOH HOH . C 3 HOH A 115 515 53 HOH HOH . C 3 HOH A 116 516 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8C3 . . . B 2 -35.355 -2.767 5.832 1 78 ? C1 8C3 301 A 1 HETATM 2 C C2 8C3 . . . B 2 -35.189 -2.649 7.337 1 81.88 ? C2 8C3 301 A 1 HETATM 3 C C3 8C3 . . . B 2 -37.608 -3.836 6.292 1 78.58 ? C3 8C3 301 A 1 HETATM 4 O O1 8C3 . . . B 2 -34.157 -2.122 7.777 1 81.09 ? O1 8C3 301 A 1 HETATM 5 O O2 8C3 . . . B 2 -34.89 -4.965 10.137 1 100.86 ? O2 8C3 301 A 1 HETATM 6 C C11 8C3 . . . B 2 -38.861 -4.491 5.85 1 78.54 ? C11 8C3 301 A 1 HETATM 7 C C12 8C3 . . . B 2 -33.561 -4.627 12.965 1 107.99 ? C12 8C3 301 A 1 HETATM 8 C C13 8C3 . . . B 2 -33.38 -3.34 12.109 1 106.48 ? C13 8C3 301 A 1 HETATM 9 C C14 8C3 . . . B 2 -34.786 -4.597 13.915 1 108.75 ? C14 8C3 301 A 1 HETATM 10 C C15 8C3 . . . B 2 -34.079 -2.849 15.567 1 108.49 ? C15 8C3 301 A 1 HETATM 11 C C16 8C3 . . . B 2 -35.471 -4.82 16.296 1 108.59 ? C16 8C3 301 A 1 HETATM 12 C C17 8C3 . . . B 2 -32.58 -2.511 15.399 1 107.85 ? C17 8C3 301 A 1 HETATM 13 C C18 8C3 . . . B 2 -36.809 -4.06 16.201 1 108.63 ? C18 8C3 301 A 1 HETATM 14 N N1 8C3 . . . B 2 -36.569 -3.353 5.332 1 76.27 ? N1 8C3 301 A 1 HETATM 15 C C4 8C3 . . . B 2 -34.529 -2.4 4.758 1 73.56 ? C4 8C3 301 A 1 HETATM 16 N N2 8C3 . . . B 2 -36.264 -3.141 8.117 1 86.07 ? N2 8C3 301 A 1 HETATM 17 C C5 8C3 . . . B 2 -36.434 -3.309 3.993 1 69.93 ? C5 8C3 301 A 1 HETATM 18 N N3 8C3 . . . B 2 -37.435 -3.722 7.574 1 82.12 ? N3 8C3 301 A 1 HETATM 19 C C6 8C3 . . . B 2 -35.239 -2.753 3.637 1 70.14 ? C6 8C3 301 A 1 HETATM 20 C C7 8C3 . . . B 2 -36.321 -3.091 9.603 1 93.1 ? C7 8C3 301 A 1 HETATM 21 C C8 8C3 . . . B 2 -37.17 -3.663 2.827 1 66.04 ? C8 8C3 301 A 1 HETATM 22 S S1 8C3 . . . B 2 -34.874 -2.621 1.97 1 67.86 ? S1 8C3 301 A 1 HETATM 23 C C9 8C3 . . . B 2 -35.168 -3.772 10.357 1 99.54 ? C9 8C3 301 A 1 HETATM 24 C C10 8C3 . . . B 2 -36.467 -3.345 1.696 1 65.69 ? C10 8C3 301 A 1 HETATM 25 N N4 8C3 . . . B 2 -34.521 -2.979 11.245 1 103.58 ? N4 8C3 301 A 1 HETATM 26 N N5 8C3 . . . B 2 -34.444 -4.291 15.342 1 108.82 ? N5 8C3 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 501 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #