data_5XPR # _model_server_result.job_id '_u4McgK-A9Onua2K0ZqO-g' _model_server_result.datetime_utc '2024-10-22 03:39:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5XPR # _exptl.entry_id 5XPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 551.614 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-tert-butyl-N-[6-(2-hydroxyethyloxy)-5-(2-methoxyphenoxy)-2-pyrimidin-2-yl-pyrimidin-4-yl]benzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XPR _cell.length_a 74.72 _cell.length_b 74.72 _cell.length_c 218.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 90 1_555 A SG CYS 406 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 112 A CYS 174 1_555 A SG CYS 193 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C27 H29 N5 O6 S' _chem_comp.formula_weight 551.614 _chem_comp.id K86 _chem_comp.mon_nstd_flag . _chem_comp.name 4-tert-butyl-N-[6-(2-hydroxyethyloxy)-5-(2-methoxyphenoxy)-2-pyrimidin-2-yl-pyrimidin-4-yl]benzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C39 O38 K86 sing 171 n n O30 C29 K86 sing 172 n n C28 C29 K86 sing 173 n n C28 O27 K86 sing 174 n n O38 C37 K86 sing 175 n n O27 C17 K86 sing 176 n n C37 C36 K86 doub 177 n y C37 C32 K86 sing 178 n y C36 C35 K86 sing 179 n y O31 C32 K86 sing 180 n n O31 C16 K86 sing 181 n n C32 C33 K86 doub 182 n y C35 C34 K86 doub 183 n y C17 C16 K86 doub 184 n y C17 N18 K86 sing 185 n y C33 C34 K86 sing 186 n y C16 C15 K86 sing 187 n y N18 C19 K86 doub 188 n y C15 N14 K86 sing 189 n n C15 N20 K86 doub 190 n y C19 N20 K86 sing 191 n y C19 C21 K86 sing 192 n n N14 S11 K86 sing 193 n n N26 C21 K86 doub 194 n y N26 C25 K86 sing 195 n y C21 N22 K86 sing 196 n y C25 C24 K86 doub 197 n y S11 O12 K86 doub 198 n n S11 O13 K86 doub 199 n n S11 C8 K86 sing 200 n n C9 C10 K86 doub 201 n y C9 C8 K86 sing 202 n y N22 C23 K86 doub 203 n y C10 C5 K86 sing 204 n y C8 C7 K86 doub 205 n y C24 C23 K86 sing 206 n y C5 C2 K86 sing 207 n n C5 C6 K86 doub 208 n y C3 C2 K86 sing 209 n n C7 C6 K86 sing 210 n y C1 C2 K86 sing 211 n n C2 C4 K86 sing 212 n n C10 H1 K86 sing 213 n n C24 H2 K86 sing 214 n n C28 H3 K86 sing 215 n n C28 H4 K86 sing 216 n n C1 H5 K86 sing 217 n n C1 H6 K86 sing 218 n n C1 H7 K86 sing 219 n n C3 H8 K86 sing 220 n n C3 H9 K86 sing 221 n n C3 H10 K86 sing 222 n n C4 H11 K86 sing 223 n n C4 H12 K86 sing 224 n n C4 H13 K86 sing 225 n n C6 H14 K86 sing 226 n n C7 H15 K86 sing 227 n n C9 H16 K86 sing 228 n n N14 H17 K86 sing 229 n n C23 H18 K86 sing 230 n n C25 H19 K86 sing 231 n n C29 H20 K86 sing 232 n n C29 H21 K86 sing 233 n n O30 H22 K86 sing 234 n n C33 H23 K86 sing 235 n n C34 H24 K86 sing 236 n n C35 H25 K86 sing 237 n n C36 H26 K86 sing 238 n n C39 H27 K86 sing 239 n n C39 H28 K86 sing 240 n n C39 H29 K86 sing 241 n n # _atom_sites.entry_id 5XPR _atom_sites.fract_transf_matrix[1][1] 0.013383 _atom_sites.fract_transf_matrix[1][2] 0.007727 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K86 A 1 1201 1 K86 BOS . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 3 SO4 A 1 1204 3 SO4 SO4 . F 3 SO4 A 1 1205 4 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 K86 . . . B 2 -34.062 7.765 13.41 1 70.67 ? C10 K86 1201 A 1 HETATM 2 C C15 K86 . . . B 2 -32.068 4.224 10.524 1 70.09 ? C15 K86 1201 A 1 HETATM 3 C C17 K86 . . . B 2 -30.483 4.516 8.773 1 69.4 ? C17 K86 1201 A 1 HETATM 4 C C21 K86 . . . B 2 -29.176 5.971 11.921 1 81.71 ? C21 K86 1201 A 1 HETATM 5 C C24 K86 . . . B 2 -27.618 7.16 13.715 1 96.78 ? C24 K86 1201 A 1 HETATM 6 C C28 K86 . . . B 2 -29.857 5.583 6.771 1 68.72 ? C28 K86 1201 A 1 HETATM 7 C C1 K86 . . . B 2 -31.617 9.968 14.644 1 76.23 ? C1 K86 1201 A 1 HETATM 8 C C2 K86 . . . B 2 -32.997 9.432 15.012 1 72.9 ? C2 K86 1201 A 1 HETATM 9 C C3 K86 . . . B 2 -34.057 10.371 14.436 1 68.05 ? C3 K86 1201 A 1 HETATM 10 C C4 K86 . . . B 2 -33.13 9.398 16.533 1 88.08 ? C4 K86 1201 A 1 HETATM 11 C C5 K86 . . . B 2 -33.158 8.013 14.434 1 71.49 ? C5 K86 1201 A 1 HETATM 12 C C6 K86 . . . B 2 -32.388 6.974 14.94 1 73.96 ? C6 K86 1201 A 1 HETATM 13 C C7 K86 . . . B 2 -32.52 5.689 14.428 1 65.71 ? C7 K86 1201 A 1 HETATM 14 C C8 K86 . . . B 2 -33.425 5.447 13.41 1 73.17 ? C8 K86 1201 A 1 HETATM 15 C C9 K86 . . . B 2 -34.196 6.479 12.896 1 75.59 ? C9 K86 1201 A 1 HETATM 16 S S11 K86 . . . B 2 -33.588 3.755 12.747 1 74.08 ? S11 K86 1201 A 1 HETATM 17 O O12 K86 . . . B 2 -34.885 3.172 13.095 1 68.25 ? O12 K86 1201 A 1 HETATM 18 O O13 K86 . . . B 2 -32.658 2.858 13.436 1 71.77 ? O13 K86 1201 A 1 HETATM 19 N N14 K86 . . . B 2 -33.343 3.75 11.051 1 70.86 ? N14 K86 1201 A 1 HETATM 20 C C16 K86 . . . B 2 -31.724 4.027 9.193 1 68.25 ? C16 K86 1201 A 1 HETATM 21 N N18 K86 . . . B 2 -29.695 5.123 9.652 1 75 ? N18 K86 1201 A 1 HETATM 22 C C19 K86 . . . B 2 -30.08 5.275 10.906 1 78.67 ? C19 K86 1201 A 1 HETATM 23 N N20 K86 . . . B 2 -31.24 4.834 11.344 1 75.94 ? N20 K86 1201 A 1 HETATM 24 N N22 K86 . . . B 2 -29.113 5.477 13.144 1 82.03 ? N22 K86 1201 A 1 HETATM 25 C C23 K86 . . . B 2 -28.351 6.035 14.068 1 92.57 ? C23 K86 1201 A 1 HETATM 26 C C25 K86 . . . B 2 -27.71 7.656 12.42 1 87.86 ? C25 K86 1201 A 1 HETATM 27 N N26 K86 . . . B 2 -28.495 7.04 11.554 1 82.79 ? N26 K86 1201 A 1 HETATM 28 O O27 K86 . . . B 2 -30.054 4.367 7.443 1 66.24 ? O27 K86 1201 A 1 HETATM 29 C C29 K86 . . . B 2 -28.368 5.933 6.794 1 72.05 ? C29 K86 1201 A 1 HETATM 30 O O30 K86 . . . B 2 -28.249 7.325 6.689 1 85.05 ? O30 K86 1201 A 1 HETATM 31 O O31 K86 . . . B 2 -32.618 3.382 8.331 1 69.27 ? O31 K86 1201 A 1 HETATM 32 C C32 K86 . . . B 2 -32.473 1.986 8.351 1 67.99 ? C32 K86 1201 A 1 HETATM 33 C C33 K86 . . . B 2 -31.442 1.371 9.04 1 68.78 ? C33 K86 1201 A 1 HETATM 34 C C34 K86 . . . B 2 -31.325 -0.011 9.032 1 69.29 ? C34 K86 1201 A 1 HETATM 35 C C35 K86 . . . B 2 -32.241 -0.786 8.341 1 67.79 ? C35 K86 1201 A 1 HETATM 36 C C36 K86 . . . B 2 -33.27 -0.17 7.652 1 66.02 ? C36 K86 1201 A 1 HETATM 37 C C37 K86 . . . B 2 -33.387 1.209 7.661 1 67.57 ? C37 K86 1201 A 1 HETATM 38 O O38 K86 . . . B 2 -34.434 1.825 6.975 1 68.52 ? O38 K86 1201 A 1 HETATM 39 C C39 K86 . . . B 2 -34.196 2.012 5.617 1 65.71 ? C39 K86 1201 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 73 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #