data_5XPY # _model_server_result.job_id gmgeFlDuwhuwnc1fdJVIZA _model_server_result.datetime_utc '2024-11-19 17:25:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 5XPY # _exptl.entry_id 5XPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XPY _cell.length_a 145.069 _cell.length_b 145.069 _cell.length_c 59.352 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5XPY _atom_sites.fract_transf_matrix[1][1] 0.006893 _atom_sites.fract_transf_matrix[1][2] 0.00398 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 701 1 ACT ACT . C 2 ACT A 1 702 2 ACT ACT . D 2 ACT A 1 703 3 ACT ACT . E 2 ACT A 1 704 4 ACT ACT . F 2 ACT A 1 705 5 ACT ACT . G 3 GOL A 1 706 1 GOL GOL . H 4 HOH A 1 801 152 HOH HOH . H 4 HOH A 2 802 32 HOH HOH . H 4 HOH A 3 803 63 HOH HOH . H 4 HOH A 4 804 89 HOH HOH . H 4 HOH A 5 805 129 HOH HOH . H 4 HOH A 6 806 142 HOH HOH . H 4 HOH A 7 807 48 HOH HOH . H 4 HOH A 8 808 35 HOH HOH . H 4 HOH A 9 809 132 HOH HOH . H 4 HOH A 10 810 36 HOH HOH . H 4 HOH A 11 811 102 HOH HOH . H 4 HOH A 12 812 55 HOH HOH . H 4 HOH A 13 813 47 HOH HOH . H 4 HOH A 14 814 109 HOH HOH . H 4 HOH A 15 815 28 HOH HOH . H 4 HOH A 16 816 144 HOH HOH . H 4 HOH A 17 817 52 HOH HOH . H 4 HOH A 18 818 133 HOH HOH . H 4 HOH A 19 819 65 HOH HOH . H 4 HOH A 20 820 61 HOH HOH . H 4 HOH A 21 821 103 HOH HOH . H 4 HOH A 22 822 82 HOH HOH . H 4 HOH A 23 823 26 HOH HOH . H 4 HOH A 24 824 34 HOH HOH . H 4 HOH A 25 825 66 HOH HOH . H 4 HOH A 26 826 145 HOH HOH . H 4 HOH A 27 827 33 HOH HOH . H 4 HOH A 28 828 25 HOH HOH . H 4 HOH A 29 829 115 HOH HOH . H 4 HOH A 30 830 83 HOH HOH . H 4 HOH A 31 831 101 HOH HOH . H 4 HOH A 32 832 23 HOH HOH . H 4 HOH A 33 833 154 HOH HOH . H 4 HOH A 34 834 11 HOH HOH . H 4 HOH A 35 835 40 HOH HOH . H 4 HOH A 36 836 51 HOH HOH . H 4 HOH A 37 837 18 HOH HOH . H 4 HOH A 38 838 73 HOH HOH . H 4 HOH A 39 839 153 HOH HOH . H 4 HOH A 40 840 106 HOH HOH . H 4 HOH A 41 841 100 HOH HOH . H 4 HOH A 42 842 71 HOH HOH . H 4 HOH A 43 843 131 HOH HOH . H 4 HOH A 44 844 31 HOH HOH . H 4 HOH A 45 845 49 HOH HOH . H 4 HOH A 46 846 57 HOH HOH . H 4 HOH A 47 847 140 HOH HOH . H 4 HOH A 48 848 134 HOH HOH . H 4 HOH A 49 849 4 HOH HOH . H 4 HOH A 50 850 146 HOH HOH . H 4 HOH A 51 851 119 HOH HOH . H 4 HOH A 52 852 44 HOH HOH . H 4 HOH A 53 853 1 HOH HOH . H 4 HOH A 54 854 50 HOH HOH . H 4 HOH A 55 855 81 HOH HOH . H 4 HOH A 56 856 19 HOH HOH . H 4 HOH A 57 857 69 HOH HOH . H 4 HOH A 58 858 99 HOH HOH . H 4 HOH A 59 859 29 HOH HOH . H 4 HOH A 60 860 118 HOH HOH . H 4 HOH A 61 861 104 HOH HOH . H 4 HOH A 62 862 15 HOH HOH . H 4 HOH A 63 863 123 HOH HOH . H 4 HOH A 64 864 37 HOH HOH . H 4 HOH A 65 865 107 HOH HOH . H 4 HOH A 66 866 39 HOH HOH . H 4 HOH A 67 867 53 HOH HOH . H 4 HOH A 68 868 78 HOH HOH . H 4 HOH A 69 869 2 HOH HOH . H 4 HOH A 70 870 13 HOH HOH . H 4 HOH A 71 871 9 HOH HOH . H 4 HOH A 72 872 151 HOH HOH . H 4 HOH A 73 873 97 HOH HOH . H 4 HOH A 74 874 92 HOH HOH . H 4 HOH A 75 875 110 HOH HOH . H 4 HOH A 76 876 120 HOH HOH . H 4 HOH A 77 877 21 HOH HOH . H 4 HOH A 78 878 137 HOH HOH . H 4 HOH A 79 879 76 HOH HOH . H 4 HOH A 80 880 112 HOH HOH . H 4 HOH A 81 881 6 HOH HOH . H 4 HOH A 82 882 90 HOH HOH . H 4 HOH A 83 883 12 HOH HOH . H 4 HOH A 84 884 27 HOH HOH . H 4 HOH A 85 885 8 HOH HOH . H 4 HOH A 86 886 5 HOH HOH . H 4 HOH A 87 887 67 HOH HOH . H 4 HOH A 88 888 24 HOH HOH . H 4 HOH A 89 889 54 HOH HOH . H 4 HOH A 90 890 10 HOH HOH . H 4 HOH A 91 891 135 HOH HOH . H 4 HOH A 92 892 41 HOH HOH . H 4 HOH A 93 893 111 HOH HOH . H 4 HOH A 94 894 72 HOH HOH . H 4 HOH A 95 895 62 HOH HOH . H 4 HOH A 96 896 147 HOH HOH . H 4 HOH A 97 897 96 HOH HOH . H 4 HOH A 98 898 79 HOH HOH . H 4 HOH A 99 899 108 HOH HOH . H 4 HOH A 100 900 56 HOH HOH . H 4 HOH A 101 901 122 HOH HOH . H 4 HOH A 102 902 60 HOH HOH . H 4 HOH A 103 903 22 HOH HOH . H 4 HOH A 104 904 141 HOH HOH . H 4 HOH A 105 905 155 HOH HOH . H 4 HOH A 106 906 128 HOH HOH . H 4 HOH A 107 907 43 HOH HOH . H 4 HOH A 108 908 116 HOH HOH . H 4 HOH A 109 909 105 HOH HOH . H 4 HOH A 110 910 58 HOH HOH . H 4 HOH A 111 911 95 HOH HOH . H 4 HOH A 112 912 14 HOH HOH . H 4 HOH A 113 913 113 HOH HOH . H 4 HOH A 114 914 77 HOH HOH . H 4 HOH A 115 915 45 HOH HOH . H 4 HOH A 116 916 38 HOH HOH . H 4 HOH A 117 917 59 HOH HOH . H 4 HOH A 118 918 3 HOH HOH . H 4 HOH A 119 919 16 HOH HOH . H 4 HOH A 120 920 75 HOH HOH . H 4 HOH A 121 921 138 HOH HOH . H 4 HOH A 122 922 94 HOH HOH . H 4 HOH A 123 923 149 HOH HOH . H 4 HOH A 124 924 70 HOH HOH . H 4 HOH A 125 925 80 HOH HOH . H 4 HOH A 126 926 68 HOH HOH . H 4 HOH A 127 927 20 HOH HOH . H 4 HOH A 128 928 85 HOH HOH . H 4 HOH A 129 929 143 HOH HOH . H 4 HOH A 130 930 84 HOH HOH . H 4 HOH A 131 931 74 HOH HOH . H 4 HOH A 132 932 17 HOH HOH . H 4 HOH A 133 933 124 HOH HOH . H 4 HOH A 134 934 46 HOH HOH . H 4 HOH A 135 935 64 HOH HOH . H 4 HOH A 136 936 30 HOH HOH . H 4 HOH A 137 937 7 HOH HOH . H 4 HOH A 138 938 88 HOH HOH . H 4 HOH A 139 939 114 HOH HOH . H 4 HOH A 140 940 130 HOH HOH . H 4 HOH A 141 941 87 HOH HOH . H 4 HOH A 142 942 126 HOH HOH . H 4 HOH A 143 943 98 HOH HOH . H 4 HOH A 144 944 91 HOH HOH . H 4 HOH A 145 945 139 HOH HOH . H 4 HOH A 146 946 117 HOH HOH . H 4 HOH A 147 947 127 HOH HOH . H 4 HOH A 148 948 93 HOH HOH . H 4 HOH A 149 949 121 HOH HOH . H 4 HOH A 150 950 156 HOH HOH . H 4 HOH A 151 951 136 HOH HOH . H 4 HOH A 152 952 150 HOH HOH . H 4 HOH A 153 953 42 HOH HOH . H 4 HOH A 154 954 86 HOH HOH . H 4 HOH A 155 955 148 HOH HOH . H 4 HOH A 156 956 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 2 -71.001 -14.543 24.362 1 25.23 ? C ACT 703 A 1 HETATM 2 O O ACT . . . D 2 -69.817 -14.241 24.633 1 32.19 ? O ACT 703 A 1 HETATM 3 O OXT ACT . . . D 2 -71.176 -15.052 23.23 1 24.04 ? OXT ACT 703 A 1 HETATM 4 C CH3 ACT . . . D 2 -72.123 -14.306 25.342 1 19.63 ? CH3 ACT 703 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #