data_5XQZ # _model_server_result.job_id AtL3TnWhp-wkOjShaPUwqg _model_server_result.datetime_utc '2024-11-04 20:34:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1002}' # _entry.id 5XQZ # _exptl.entry_id 5XQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XQZ _cell.length_a 57.519 _cell.length_b 94.424 _cell.length_c 102.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 56 A CYS 79 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A SG CYS 61 A CYS 84 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc3 A NE2 HIS 138 A HIS 161 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc4 A NE2 HIS 143 A HIS 166 1_555 E ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? metalc ? metalc5 C SG CYS 56 B CYS 79 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc6 C SG CYS 61 B CYS 84 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 C NE2 HIS 138 B HIS 161 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc8 C NE2 HIS 143 B HIS 166 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XQZ _atom_sites.fract_transf_matrix[1][1] 0.017386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010591 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1001 1001 ZN Zn . F 4 GOL A 1 1002 4 GOL GOL . G 4 GOL C 1 101 1 GOL GOL . H 3 ZN B 1 1001 1001 ZN Zn . I 4 GOL B 1 1002 2 GOL GOL . J 5 HOH A 1 1101 175 HOH HOH . J 5 HOH A 2 1102 23 HOH HOH . J 5 HOH A 3 1103 208 HOH HOH . J 5 HOH A 4 1104 80 HOH HOH . J 5 HOH A 5 1105 29 HOH HOH . J 5 HOH A 6 1106 189 HOH HOH . J 5 HOH A 7 1107 88 HOH HOH . J 5 HOH A 8 1108 31 HOH HOH . J 5 HOH A 9 1109 19 HOH HOH . J 5 HOH A 10 1110 209 HOH HOH . J 5 HOH A 11 1111 52 HOH HOH . J 5 HOH A 12 1112 214 HOH HOH . J 5 HOH A 13 1113 2 HOH HOH . J 5 HOH A 14 1114 183 HOH HOH . J 5 HOH A 15 1115 29 HOH HOH . J 5 HOH A 16 1116 64 HOH HOH . J 5 HOH A 17 1117 58 HOH HOH . J 5 HOH A 18 1118 15 HOH HOH . J 5 HOH A 19 1119 51 HOH HOH . J 5 HOH A 20 1120 54 HOH HOH . J 5 HOH A 21 1121 4 HOH HOH . J 5 HOH A 22 1122 66 HOH HOH . J 5 HOH A 23 1123 57 HOH HOH . J 5 HOH A 24 1124 37 HOH HOH . J 5 HOH A 25 1125 83 HOH HOH . J 5 HOH A 26 1126 27 HOH HOH . J 5 HOH A 27 1127 187 HOH HOH . J 5 HOH A 28 1128 87 HOH HOH . J 5 HOH A 29 1129 28 HOH HOH . J 5 HOH A 30 1130 2 HOH HOH . J 5 HOH A 31 1131 193 HOH HOH . J 5 HOH A 32 1132 3 HOH HOH . J 5 HOH A 33 1133 181 HOH HOH . J 5 HOH A 34 1134 8 HOH HOH . J 5 HOH A 35 1135 16 HOH HOH . J 5 HOH A 36 1136 93 HOH HOH . J 5 HOH A 37 1137 73 HOH HOH . J 5 HOH A 38 1138 34 HOH HOH . J 5 HOH A 39 1139 81 HOH HOH . J 5 HOH A 40 1140 173 HOH HOH . J 5 HOH A 41 1141 74 HOH HOH . J 5 HOH A 42 1142 191 HOH HOH . J 5 HOH A 43 1143 46 HOH HOH . J 5 HOH A 44 1144 10 HOH HOH . J 5 HOH A 45 1145 25 HOH HOH . J 5 HOH A 46 1146 115 HOH HOH . J 5 HOH A 47 1147 55 HOH HOH . J 5 HOH A 48 1148 184 HOH HOH . J 5 HOH A 49 1149 8 HOH HOH . J 5 HOH A 50 1150 212 HOH HOH . J 5 HOH A 51 1151 11 HOH HOH . J 5 HOH A 52 1152 68 HOH HOH . J 5 HOH A 53 1153 42 HOH HOH . J 5 HOH A 54 1154 167 HOH HOH . J 5 HOH A 55 1155 92 HOH HOH . J 5 HOH A 56 1156 107 HOH HOH . J 5 HOH A 57 1157 9 HOH HOH . J 5 HOH A 58 1158 27 HOH HOH . J 5 HOH A 59 1159 20 HOH HOH . J 5 HOH A 60 1160 148 HOH HOH . J 5 HOH A 61 1161 30 HOH HOH . J 5 HOH A 62 1162 10 HOH HOH . J 5 HOH A 63 1163 100 HOH HOH . J 5 HOH A 64 1164 171 HOH HOH . J 5 HOH A 65 1165 67 HOH HOH . J 5 HOH A 66 1166 176 HOH HOH . J 5 HOH A 67 1167 38 HOH HOH . J 5 HOH A 68 1168 114 HOH HOH . J 5 HOH A 69 1169 79 HOH HOH . J 5 HOH A 70 1170 150 HOH HOH . J 5 HOH A 71 1171 118 HOH HOH . J 5 HOH A 72 1172 84 HOH HOH . J 5 HOH A 73 1173 213 HOH HOH . K 5 HOH C 1 201 70 HOH HOH . K 5 HOH C 2 202 20 HOH HOH . K 5 HOH C 3 203 202 HOH HOH . K 5 HOH C 4 204 44 HOH HOH . K 5 HOH C 5 205 141 HOH HOH . K 5 HOH C 6 206 30 HOH HOH . K 5 HOH C 7 207 23 HOH HOH . K 5 HOH C 8 208 105 HOH HOH . K 5 HOH C 9 209 76 HOH HOH . K 5 HOH C 10 210 85 HOH HOH . K 5 HOH C 11 211 18 HOH HOH . K 5 HOH C 12 212 196 HOH HOH . K 5 HOH C 13 213 113 HOH HOH . K 5 HOH C 14 214 11 HOH HOH . K 5 HOH C 15 215 22 HOH HOH . K 5 HOH C 16 216 192 HOH HOH . K 5 HOH C 17 217 210 HOH HOH . K 5 HOH C 18 218 40 HOH HOH . K 5 HOH C 19 219 130 HOH HOH . K 5 HOH C 20 220 3 HOH HOH . K 5 HOH C 21 221 109 HOH HOH . K 5 HOH C 22 222 170 HOH HOH . K 5 HOH C 23 223 120 HOH HOH . K 5 HOH C 24 224 6 HOH HOH . K 5 HOH C 25 225 178 HOH HOH . K 5 HOH C 26 226 140 HOH HOH . K 5 HOH C 27 227 35 HOH HOH . K 5 HOH C 28 228 26 HOH HOH . L 5 HOH B 1 1101 197 HOH HOH . L 5 HOH B 2 1102 186 HOH HOH . L 5 HOH B 3 1103 144 HOH HOH . L 5 HOH B 4 1104 172 HOH HOH . L 5 HOH B 5 1105 91 HOH HOH . L 5 HOH B 6 1106 164 HOH HOH . L 5 HOH B 7 1107 124 HOH HOH . L 5 HOH B 8 1108 128 HOH HOH . L 5 HOH B 9 1109 75 HOH HOH . L 5 HOH B 10 1110 49 HOH HOH . L 5 HOH B 11 1111 110 HOH HOH . L 5 HOH B 12 1112 1 HOH HOH . L 5 HOH B 13 1113 60 HOH HOH . L 5 HOH B 14 1114 134 HOH HOH . L 5 HOH B 15 1115 16 HOH HOH . L 5 HOH B 16 1116 21 HOH HOH . L 5 HOH B 17 1117 41 HOH HOH . L 5 HOH B 18 1118 157 HOH HOH . L 5 HOH B 19 1119 36 HOH HOH . L 5 HOH B 20 1120 15 HOH HOH . L 5 HOH B 21 1121 89 HOH HOH . L 5 HOH B 22 1122 143 HOH HOH . L 5 HOH B 23 1123 43 HOH HOH . L 5 HOH B 24 1124 97 HOH HOH . L 5 HOH B 25 1125 69 HOH HOH . L 5 HOH B 26 1126 31 HOH HOH . L 5 HOH B 27 1127 5 HOH HOH . L 5 HOH B 28 1128 24 HOH HOH . L 5 HOH B 29 1129 179 HOH HOH . L 5 HOH B 30 1130 13 HOH HOH . L 5 HOH B 31 1131 28 HOH HOH . L 5 HOH B 32 1132 33 HOH HOH . L 5 HOH B 33 1133 95 HOH HOH . L 5 HOH B 34 1134 6 HOH HOH . L 5 HOH B 35 1135 72 HOH HOH . L 5 HOH B 36 1136 4 HOH HOH . L 5 HOH B 37 1137 200 HOH HOH . L 5 HOH B 38 1138 104 HOH HOH . L 5 HOH B 39 1139 63 HOH HOH . L 5 HOH B 40 1140 26 HOH HOH . L 5 HOH B 41 1141 108 HOH HOH . L 5 HOH B 42 1142 149 HOH HOH . L 5 HOH B 43 1143 147 HOH HOH . L 5 HOH B 44 1144 32 HOH HOH . L 5 HOH B 45 1145 169 HOH HOH . L 5 HOH B 46 1146 156 HOH HOH . L 5 HOH B 47 1147 14 HOH HOH . L 5 HOH B 48 1148 180 HOH HOH . L 5 HOH B 49 1149 160 HOH HOH . L 5 HOH B 50 1150 159 HOH HOH . L 5 HOH B 51 1151 185 HOH HOH . L 5 HOH B 52 1152 12 HOH HOH . L 5 HOH B 53 1153 151 HOH HOH . L 5 HOH B 54 1154 71 HOH HOH . L 5 HOH B 55 1155 161 HOH HOH . L 5 HOH B 56 1156 126 HOH HOH . L 5 HOH B 57 1157 190 HOH HOH . L 5 HOH B 58 1158 18 HOH HOH . L 5 HOH B 59 1159 78 HOH HOH . L 5 HOH B 60 1160 211 HOH HOH . L 5 HOH B 61 1161 59 HOH HOH . L 5 HOH B 62 1162 99 HOH HOH . L 5 HOH B 63 1163 166 HOH HOH . L 5 HOH B 64 1164 127 HOH HOH . L 5 HOH B 65 1165 34 HOH HOH . L 5 HOH B 66 1166 137 HOH HOH . L 5 HOH B 67 1167 101 HOH HOH . L 5 HOH B 68 1168 56 HOH HOH . L 5 HOH B 69 1169 47 HOH HOH . L 5 HOH B 70 1170 7 HOH HOH . L 5 HOH B 71 1171 33 HOH HOH . L 5 HOH B 72 1172 182 HOH HOH . L 5 HOH B 73 1173 133 HOH HOH . L 5 HOH B 74 1174 132 HOH HOH . L 5 HOH B 75 1175 13 HOH HOH . L 5 HOH B 76 1176 146 HOH HOH . L 5 HOH B 77 1177 50 HOH HOH . L 5 HOH B 78 1178 7 HOH HOH . L 5 HOH B 79 1179 152 HOH HOH . L 5 HOH B 80 1180 103 HOH HOH . L 5 HOH B 81 1181 168 HOH HOH . L 5 HOH B 82 1182 25 HOH HOH . L 5 HOH B 83 1183 98 HOH HOH . L 5 HOH B 84 1184 77 HOH HOH . L 5 HOH B 85 1185 153 HOH HOH . L 5 HOH B 86 1186 121 HOH HOH . L 5 HOH B 87 1187 154 HOH HOH . L 5 HOH B 88 1188 163 HOH HOH . L 5 HOH B 89 1189 9 HOH HOH . L 5 HOH B 90 1190 119 HOH HOH . L 5 HOH B 91 1191 82 HOH HOH . L 5 HOH B 92 1192 86 HOH HOH . L 5 HOH B 93 1193 158 HOH HOH . L 5 HOH B 94 1194 136 HOH HOH . L 5 HOH B 95 1195 139 HOH HOH . L 5 HOH B 96 1196 207 HOH HOH . L 5 HOH B 97 1197 123 HOH HOH . L 5 HOH B 98 1198 145 HOH HOH . L 5 HOH B 99 1199 17 HOH HOH . L 5 HOH B 100 1200 111 HOH HOH . L 5 HOH B 101 1201 32 HOH HOH . L 5 HOH B 102 1202 19 HOH HOH . L 5 HOH B 103 1203 203 HOH HOH . L 5 HOH B 104 1204 5 HOH HOH . L 5 HOH B 105 1205 38 HOH HOH . M 5 HOH D 1 101 199 HOH HOH . M 5 HOH D 2 102 206 HOH HOH . M 5 HOH D 3 103 194 HOH HOH . M 5 HOH D 4 104 205 HOH HOH . M 5 HOH D 5 105 177 HOH HOH . M 5 HOH D 6 106 155 HOH HOH . M 5 HOH D 7 107 90 HOH HOH . M 5 HOH D 8 108 17 HOH HOH . M 5 HOH D 9 109 188 HOH HOH . M 5 HOH D 10 110 106 HOH HOH . M 5 HOH D 11 111 48 HOH HOH . M 5 HOH D 12 112 204 HOH HOH . M 5 HOH D 13 113 39 HOH HOH . M 5 HOH D 14 114 116 HOH HOH . M 5 HOH D 15 115 21 HOH HOH . M 5 HOH D 16 116 112 HOH HOH . M 5 HOH D 17 117 62 HOH HOH . M 5 HOH D 18 118 65 HOH HOH . M 5 HOH D 19 119 94 HOH HOH . M 5 HOH D 20 120 96 HOH HOH . M 5 HOH D 21 121 22 HOH HOH . M 5 HOH D 22 122 142 HOH HOH . M 5 HOH D 23 123 53 HOH HOH . M 5 HOH D 24 124 45 HOH HOH . M 5 HOH D 25 125 131 HOH HOH . M 5 HOH D 26 126 162 HOH HOH . M 5 HOH D 27 127 36 HOH HOH . M 5 HOH D 28 128 37 HOH HOH . M 5 HOH D 29 129 61 HOH HOH . M 5 HOH D 30 130 102 HOH HOH . M 5 HOH D 31 131 195 HOH HOH . M 5 HOH D 32 132 138 HOH HOH . M 5 HOH D 33 133 198 HOH HOH . M 5 HOH D 34 134 1 HOH HOH . M 5 HOH D 35 135 165 HOH HOH . M 5 HOH D 36 136 35 HOH HOH . M 5 HOH D 37 137 122 HOH HOH . M 5 HOH D 38 138 14 HOH HOH . M 5 HOH D 39 139 117 HOH HOH . M 5 HOH D 40 140 24 HOH HOH . M 5 HOH D 41 141 125 HOH HOH . M 5 HOH D 42 142 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 -59.226 6.657 33.368 1 47.98 ? C1 GOL 1002 B 1 HETATM 2 O O1 GOL . . . I 4 -60.417 5.901 33.045 1 50.42 ? O1 GOL 1002 B 1 HETATM 3 C C2 GOL . . . I 4 -59.376 8.141 33.785 1 48.48 ? C2 GOL 1002 B 1 HETATM 4 O O2 GOL . . . I 4 -60.726 8.54 33.991 1 56.81 ? O2 GOL 1002 B 1 HETATM 5 C C3 GOL . . . I 4 -58.791 9.09 32.735 1 47.04 ? C3 GOL 1002 B 1 HETATM 6 O O3 GOL . . . I 4 -59.668 10.207 32.54 1 51.38 ? O3 GOL 1002 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #