data_5XR8
#
_model_server_result.job_id            mpY3O_q7LJQCn5oSqXH5xA 
_model_server_result.datetime_utc      '2024-11-23 09:19:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    5XR8 
#
_exptl.entry_id    5XR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XR8 
_cell.length_a            66.83 
_cell.length_b            73.61 
_cell.length_c            139.64 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 232 n n 
N1 C10 FMN doub 233 n n 
C2 O2 FMN doub 234 n n 
C2 N3 FMN sing 235 n n 
N3 C4 FMN sing 236 n n 
N3 HN3 FMN sing 237 n n 
C4 O4 FMN doub 238 n n 
C4 C4A FMN sing 239 n n 
C4A N5 FMN doub 240 n n 
C4A C10 FMN sing 241 n n 
N5 C5A FMN sing 242 n n 
C5A C6 FMN doub 243 n y 
C5A C9A FMN sing 244 n y 
C6 C7 FMN sing 245 n y 
C6 H6 FMN sing 246 n n 
C7 C7M FMN sing 247 n n 
C7 C8 FMN doub 248 n y 
C7M HM71 FMN sing 249 n n 
C7M HM72 FMN sing 250 n n 
C7M HM73 FMN sing 251 n n 
C8 C8M FMN sing 252 n n 
C8 C9 FMN sing 253 n y 
C8M HM81 FMN sing 254 n n 
C8M HM82 FMN sing 255 n n 
C8M HM83 FMN sing 256 n n 
C9 C9A FMN doub 257 n y 
C9 H9 FMN sing 258 n n 
C9A N10 FMN sing 259 n n 
N10 C10 FMN sing 260 n n 
N10 C1' FMN sing 261 n n 
C1' C2' FMN sing 262 n n 
C1' "H1'1" FMN sing 263 n n 
C1' "H1'2" FMN sing 264 n n 
C2' O2' FMN sing 265 n n 
C2' C3' FMN sing 266 n n 
C2' H2' FMN sing 267 n n 
O2' HO2' FMN sing 268 n n 
C3' O3' FMN sing 269 n n 
C3' C4' FMN sing 270 n n 
C3' H3' FMN sing 271 n n 
O3' HO3' FMN sing 272 n n 
C4' O4' FMN sing 273 n n 
C4' C5' FMN sing 274 n n 
C4' H4' FMN sing 275 n n 
O4' HO4' FMN sing 276 n n 
C5' O5' FMN sing 277 n n 
C5' "H5'1" FMN sing 278 n n 
C5' "H5'2" FMN sing 279 n n 
O5' P FMN sing 280 n n 
P O1P FMN doub 281 n n 
P O2P FMN sing 282 n n 
P O3P FMN sing 283 n n 
O2P HOP2 FMN sing 284 n n 
O3P HOP3 FMN sing 285 n n 
#
_atom_sites.entry_id                     5XR8 
_atom_sites.fract_transf_matrix[1][1]    0.014963 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 1201 1 FMN FMN . 
C 3 8D0 A 1 1202 1 8D0 AML . 
D 4 CLR A 1 1203 1 CLR CLR . 
E 5 PEG A 1 1204 1 PEG PEG . 
F 6 HOH A 1 1301 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . B 2 -41.524 -105.577 248.2 1 103.11 ? N1 FMN 1201 A 1 
HETATM 2 C C2 FMN . . . B 2 -42.286 -104.876 249.091 1 99.93 ? C2 FMN 1201 A 1 
HETATM 3 O O2 FMN . . . B 2 -41.831 -104.493 250.175 1 102.21 ? O2 FMN 1201 A 1 
HETATM 4 N N3 FMN . . . B 2 -43.601 -104.572 248.786 1 98.24 ? N3 FMN 1201 A 1 
HETATM 5 C C4 FMN . . . B 2 -44.264 -104.913 247.623 1 100.58 ? C4 FMN 1201 A 1 
HETATM 6 O O4 FMN . . . B 2 -45.442 -104.589 247.464 1 99.33 ? O4 FMN 1201 A 1 
HETATM 7 C C4A FMN . . . B 2 -43.449 -105.654 246.677 1 103.17 ? C4A FMN 1201 A 1 
HETATM 8 N N5 FMN . . . B 2 -43.985 -106.006 245.544 1 104.85 ? N5 FMN 1201 A 1 
HETATM 9 C C5A FMN . . . B 2 -43.197 -106.696 244.634 1 102.47 ? C5A FMN 1201 A 1 
HETATM 10 C C6 FMN . . . B 2 -43.747 -107.046 243.401 1 99.98 ? C6 FMN 1201 A 1 
HETATM 11 C C7 FMN . . . B 2 -42.987 -107.703 242.439 1 102.62 ? C7 FMN 1201 A 1 
HETATM 12 C C7M FMN . . . B 2 -43.612 -108.058 241.115 1 99.45 ? C7M FMN 1201 A 1 
HETATM 13 C C8 FMN . . . B 2 -41.646 -108.023 242.714 1 106.12 ? C8 FMN 1201 A 1 
HETATM 14 C C8M FMN . . . B 2 -40.785 -108.703 241.683 1 109.73 ? C8M FMN 1201 A 1 
HETATM 15 C C9 FMN . . . B 2 -41.1 -107.688 243.95 1 104.42 ? C9 FMN 1201 A 1 
HETATM 16 C C9A FMN . . . B 2 -41.861 -107.026 244.907 1 104.23 ? C9A FMN 1201 A 1 
HETATM 17 N N10 FMN . . . B 2 -41.323 -106.637 246.15 1 106.27 ? N10 FMN 1201 A 1 
HETATM 18 C C10 FMN . . . B 2 -42.084 -105.942 247.059 1 103.91 ? C10 FMN 1201 A 1 
HETATM 19 C C1' FMN . . . B 2 -39.934 -106.982 246.482 1 111.98 ? C1' FMN 1201 A 1 
HETATM 20 C C2' FMN . . . B 2 -39.803 -108.332 247.178 1 116.67 ? C2' FMN 1201 A 1 
HETATM 21 O O2' FMN . . . B 2 -40.592 -108.352 248.368 1 118.84 ? O2' FMN 1201 A 1 
HETATM 22 C C3' FMN . . . B 2 -38.342 -108.608 247.537 1 117.59 ? C3' FMN 1201 A 1 
HETATM 23 O O3' FMN . . . B 2 -37.653 -109.021 246.362 1 110.63 ? O3' FMN 1201 A 1 
HETATM 24 C C4' FMN . . . B 2 -38.192 -109.7 248.597 1 122.32 ? C4' FMN 1201 A 1 
HETATM 25 O O4' FMN . . . B 2 -36.855 -109.703 249.099 1 123.68 ? O4' FMN 1201 A 1 
HETATM 26 C C5' FMN . . . B 2 -38.569 -111.076 248.092 1 125.45 ? C5' FMN 1201 A 1 
HETATM 27 O O5' FMN . . . B 2 -38.536 -111.992 249.206 1 126.52 ? O5' FMN 1201 A 1 
HETATM 28 P P FMN . . . B 2 -38.423 -113.582 249.07 1 118.69 ? P FMN 1201 A 1 
HETATM 29 O O1P FMN . . . B 2 -39.471 -114.088 248.141 1 111.49 ? O1P FMN 1201 A 1 
HETATM 30 O O2P FMN . . . B 2 -38.558 -114.135 250.494 1 114.43 -1 O2P FMN 1201 A 1 
HETATM 31 O O3P FMN . . . B 2 -37.006 -113.878 248.581 1 117.28 -1 O3P FMN 1201 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           31 
#