data_5XR8 # _model_server_result.job_id slTBDdyIwY04xQy86pVLwQ _model_server_result.datetime_utc '2024-11-07 22:44:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5XR8 # _exptl.entry_id 5XR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XR8 _cell.length_a 66.83 _cell.length_b 73.61 _cell.length_c 139.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 232 n n N1 C10 FMN doub 233 n n C2 O2 FMN doub 234 n n C2 N3 FMN sing 235 n n N3 C4 FMN sing 236 n n N3 HN3 FMN sing 237 n n C4 O4 FMN doub 238 n n C4 C4A FMN sing 239 n n C4A N5 FMN doub 240 n n C4A C10 FMN sing 241 n n N5 C5A FMN sing 242 n n C5A C6 FMN doub 243 n y C5A C9A FMN sing 244 n y C6 C7 FMN sing 245 n y C6 H6 FMN sing 246 n n C7 C7M FMN sing 247 n n C7 C8 FMN doub 248 n y C7M HM71 FMN sing 249 n n C7M HM72 FMN sing 250 n n C7M HM73 FMN sing 251 n n C8 C8M FMN sing 252 n n C8 C9 FMN sing 253 n y C8M HM81 FMN sing 254 n n C8M HM82 FMN sing 255 n n C8M HM83 FMN sing 256 n n C9 C9A FMN doub 257 n y C9 H9 FMN sing 258 n n C9A N10 FMN sing 259 n n N10 C10 FMN sing 260 n n N10 C1' FMN sing 261 n n C1' C2' FMN sing 262 n n C1' "H1'1" FMN sing 263 n n C1' "H1'2" FMN sing 264 n n C2' O2' FMN sing 265 n n C2' C3' FMN sing 266 n n C2' H2' FMN sing 267 n n O2' HO2' FMN sing 268 n n C3' O3' FMN sing 269 n n C3' C4' FMN sing 270 n n C3' H3' FMN sing 271 n n O3' HO3' FMN sing 272 n n C4' O4' FMN sing 273 n n C4' C5' FMN sing 274 n n C4' H4' FMN sing 275 n n O4' HO4' FMN sing 276 n n C5' O5' FMN sing 277 n n C5' "H5'1" FMN sing 278 n n C5' "H5'2" FMN sing 279 n n O5' P FMN sing 280 n n P O1P FMN doub 281 n n P O2P FMN sing 282 n n P O3P FMN sing 283 n n O2P HOP2 FMN sing 284 n n O3P HOP3 FMN sing 285 n n # _atom_sites.entry_id 5XR8 _atom_sites.fract_transf_matrix[1][1] 0.014963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 1201 1 FMN FMN . C 3 8D0 A 1 1202 1 8D0 AML . D 4 CLR A 1 1203 1 CLR CLR . E 5 PEG A 1 1204 1 PEG PEG . F 6 HOH A 1 1301 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -41.524 -105.577 248.2 1 103.11 ? N1 FMN 1201 A 1 HETATM 2 C C2 FMN . . . B 2 -42.286 -104.876 249.091 1 99.93 ? C2 FMN 1201 A 1 HETATM 3 O O2 FMN . . . B 2 -41.831 -104.493 250.175 1 102.21 ? O2 FMN 1201 A 1 HETATM 4 N N3 FMN . . . B 2 -43.601 -104.572 248.786 1 98.24 ? N3 FMN 1201 A 1 HETATM 5 C C4 FMN . . . B 2 -44.264 -104.913 247.623 1 100.58 ? C4 FMN 1201 A 1 HETATM 6 O O4 FMN . . . B 2 -45.442 -104.589 247.464 1 99.33 ? O4 FMN 1201 A 1 HETATM 7 C C4A FMN . . . B 2 -43.449 -105.654 246.677 1 103.17 ? C4A FMN 1201 A 1 HETATM 8 N N5 FMN . . . B 2 -43.985 -106.006 245.544 1 104.85 ? N5 FMN 1201 A 1 HETATM 9 C C5A FMN . . . B 2 -43.197 -106.696 244.634 1 102.47 ? C5A FMN 1201 A 1 HETATM 10 C C6 FMN . . . B 2 -43.747 -107.046 243.401 1 99.98 ? C6 FMN 1201 A 1 HETATM 11 C C7 FMN . . . B 2 -42.987 -107.703 242.439 1 102.62 ? C7 FMN 1201 A 1 HETATM 12 C C7M FMN . . . B 2 -43.612 -108.058 241.115 1 99.45 ? C7M FMN 1201 A 1 HETATM 13 C C8 FMN . . . B 2 -41.646 -108.023 242.714 1 106.12 ? C8 FMN 1201 A 1 HETATM 14 C C8M FMN . . . B 2 -40.785 -108.703 241.683 1 109.73 ? C8M FMN 1201 A 1 HETATM 15 C C9 FMN . . . B 2 -41.1 -107.688 243.95 1 104.42 ? C9 FMN 1201 A 1 HETATM 16 C C9A FMN . . . B 2 -41.861 -107.026 244.907 1 104.23 ? C9A FMN 1201 A 1 HETATM 17 N N10 FMN . . . B 2 -41.323 -106.637 246.15 1 106.27 ? N10 FMN 1201 A 1 HETATM 18 C C10 FMN . . . B 2 -42.084 -105.942 247.059 1 103.91 ? C10 FMN 1201 A 1 HETATM 19 C C1' FMN . . . B 2 -39.934 -106.982 246.482 1 111.98 ? C1' FMN 1201 A 1 HETATM 20 C C2' FMN . . . B 2 -39.803 -108.332 247.178 1 116.67 ? C2' FMN 1201 A 1 HETATM 21 O O2' FMN . . . B 2 -40.592 -108.352 248.368 1 118.84 ? O2' FMN 1201 A 1 HETATM 22 C C3' FMN . . . B 2 -38.342 -108.608 247.537 1 117.59 ? C3' FMN 1201 A 1 HETATM 23 O O3' FMN . . . B 2 -37.653 -109.021 246.362 1 110.63 ? O3' FMN 1201 A 1 HETATM 24 C C4' FMN . . . B 2 -38.192 -109.7 248.597 1 122.32 ? C4' FMN 1201 A 1 HETATM 25 O O4' FMN . . . B 2 -36.855 -109.703 249.099 1 123.68 ? O4' FMN 1201 A 1 HETATM 26 C C5' FMN . . . B 2 -38.569 -111.076 248.092 1 125.45 ? C5' FMN 1201 A 1 HETATM 27 O O5' FMN . . . B 2 -38.536 -111.992 249.206 1 126.52 ? O5' FMN 1201 A 1 HETATM 28 P P FMN . . . B 2 -38.423 -113.582 249.07 1 118.69 ? P FMN 1201 A 1 HETATM 29 O O1P FMN . . . B 2 -39.471 -114.088 248.141 1 111.49 ? O1P FMN 1201 A 1 HETATM 30 O O2P FMN . . . B 2 -38.558 -114.135 250.494 1 114.43 -1 O2P FMN 1201 A 1 HETATM 31 O O3P FMN . . . B 2 -37.006 -113.878 248.581 1 117.28 -1 O3P FMN 1201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #