data_5XR8
#
_model_server_result.job_id            yyAHbGDFs4_DDSHKvgqWRQ 
_model_server_result.datetime_utc      '2024-11-07 22:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xr8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1202}' 
#
_entry.id    5XR8 
#
_exptl.entry_id    5XR8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              445.658 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6~{a}~{R},9~{R},10~{a}~{R})-9-(hydroxymethyl)-3-(8-isothiocyanato-2-methyl-octan-2-yl)-6,6-dimethyl-6~{a},7,8,9,10,10~{a}-hexahydrobenzo[c]chromen-1-ol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XR8 
_cell.length_a            66.83 
_cell.length_b            73.61 
_cell.length_c            139.64 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XR8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H39 N O3 S' 
_chem_comp.formula_weight    445.658 
_chem_comp.id                8D0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6~{a}~{R},9~{R},10~{a}~{R})-9-(hydroxymethyl)-3-(8-isothiocyanato-2-methyl-octan-2-yl)-6,6-dimethyl-6~{a},7,8,9,10,10~{a}-hexahydrobenzo[c]chromen-1-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C24 8D0 sing 1 n n 
C23 C22 8D0 sing 2 n n 
C24 C25 8D0 sing 3 n n 
C19 C17 8D0 sing 4 n n 
C22 C21 8D0 sing 5 n n 
C18 C21 8D0 sing 6 n n 
C18 C17 8D0 sing 7 n n 
C25 N1 8D0 sing 8 n n 
C17 C20 8D0 sing 9 n n 
C17 C2 8D0 sing 10 n n 
C3 C2 8D0 doub 11 n y 
C3 C4 8D0 sing 12 n y 
O3 C4 8D0 sing 13 n n 
C2 C1 8D0 sing 14 n y 
C4 C5 8D0 doub 15 n y 
O2 C14 8D0 sing 16 n n 
C1 C6 8D0 doub 17 n y 
C5 C6 8D0 sing 18 n y 
C5 C7 8D0 sing 19 n n 
C10 C7 8D0 sing 20 n n 
C10 C11 8D0 sing 21 n n 
C6 O1 8D0 sing 22 n n 
C14 C11 8D0 sing 23 n n 
C7 C8 8D0 sing 24 n n 
C11 C12 8D0 sing 25 n n 
O1 C9 8D0 sing 26 n n 
C8 C9 8D0 sing 27 n n 
C8 C13 8D0 sing 28 n n 
C12 C13 8D0 sing 29 n n 
C9 C15 8D0 sing 30 n n 
C9 C16 8D0 sing 31 n n 
C1 H1 8D0 sing 32 n n 
C3 H2 8D0 sing 33 n n 
C10 H6 8D0 sing 34 n n 
C10 H7 8D0 sing 35 n n 
C11 H8 8D0 sing 36 n n 
C12 H9 8D0 sing 37 n n 
C12 H10 8D0 sing 38 n n 
C13 H11 8D0 sing 39 n n 
C13 H12 8D0 sing 40 n n 
C14 H13 8D0 sing 41 n n 
C14 H14 8D0 sing 42 n n 
C15 H15 8D0 sing 43 n n 
C15 H16 8D0 sing 44 n n 
C15 H17 8D0 sing 45 n n 
C16 H18 8D0 sing 46 n n 
C16 H19 8D0 sing 47 n n 
C16 H20 8D0 sing 48 n n 
C18 H21 8D0 sing 49 n n 
C18 H22 8D0 sing 50 n n 
C19 H23 8D0 sing 51 n n 
C19 H24 8D0 sing 52 n n 
C19 H25 8D0 sing 53 n n 
C20 H26 8D0 sing 54 n n 
C20 H27 8D0 sing 55 n n 
C20 H28 8D0 sing 56 n n 
C21 H29 8D0 sing 57 n n 
C21 H30 8D0 sing 58 n n 
C22 H31 8D0 sing 59 n n 
C22 H32 8D0 sing 60 n n 
C23 H33 8D0 sing 61 n n 
C23 H34 8D0 sing 62 n n 
C24 H35 8D0 sing 63 n n 
C24 H36 8D0 sing 64 n n 
C25 H37 8D0 sing 65 n n 
C25 H38 8D0 sing 66 n n 
C7 H39 8D0 sing 67 n n 
C8 H40 8D0 sing 68 n n 
O2 H41 8D0 sing 69 n n 
O3 H42 8D0 sing 70 n n 
N1 C26 8D0 doub 71 n n 
C26 S1 8D0 doub 72 n n 
#
_atom_sites.entry_id                     5XR8 
_atom_sites.fract_transf_matrix[1][1]    0.014963 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 1201 1 FMN FMN . 
C 3 8D0 A 1 1202 1 8D0 AML . 
D 4 CLR A 1 1203 1 CLR CLR . 
E 5 PEG A 1 1204 1 PEG PEG . 
F 6 HOH A 1 1301 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8D0 . . . C 3 -42.678 -157.964 308.565 1 90.95 ? C1 8D0 1202 A 1 
HETATM 2 C C2 8D0 . . . C 3 -42.185 -157.808 307.25 1 98.68 ? C2 8D0 1202 A 1 
HETATM 3 C C3 8D0 . . . C 3 -41.225 -158.728 306.787 1 94.79 ? C3 8D0 1202 A 1 
HETATM 4 C C4 8D0 . . . C 3 -40.767 -159.781 307.599 1 89.59 ? C4 8D0 1202 A 1 
HETATM 5 C C5 8D0 . . . C 3 -41.266 -159.937 308.922 1 85.94 ? C5 8D0 1202 A 1 
HETATM 6 N N1 8D0 . . . C 3 -49.883 -159.61 305.995 1 81.39 ? N1 8D0 1202 A 1 
HETATM 7 C C10 8D0 . . . C 3 -40.86 -162.472 309.213 1 96.19 ? C10 8D0 1202 A 1 
HETATM 8 C C11 8D0 . . . C 3 -40.386 -163.598 310.154 1 97.07 ? C11 8D0 1202 A 1 
HETATM 9 C C12 8D0 . . . C 3 -41.153 -163.564 311.492 1 93.82 ? C12 8D0 1202 A 1 
HETATM 10 C C13 8D0 . . . C 3 -41.128 -162.161 312.122 1 89.63 ? C13 8D0 1202 A 1 
HETATM 11 C C14 8D0 . . . C 3 -40.513 -164.953 309.434 1 96.61 ? C14 8D0 1202 A 1 
HETATM 12 C C15 8D0 . . . C 3 -40.887 -158.894 312.04 1 84.6 ? C15 8D0 1202 A 1 
HETATM 13 C C16 8D0 . . . C 3 -43.037 -159.836 312.927 1 79.15 ? C16 8D0 1202 A 1 
HETATM 14 C C17 8D0 . . . C 3 -42.646 -156.676 306.315 1 101.71 ? C17 8D0 1202 A 1 
HETATM 15 C C18 8D0 . . . C 3 -43.87 -157.135 305.473 1 100.83 ? C18 8D0 1202 A 1 
HETATM 16 C C19 8D0 . . . C 3 -41.528 -156.222 305.351 1 99.49 ? C19 8D0 1202 A 1 
HETATM 17 C C20 8D0 . . . C 3 -43.035 -155.439 307.155 1 101.39 ? C20 8D0 1202 A 1 
HETATM 18 C C21 8D0 . . . C 3 -45.148 -157.478 306.27 1 102.24 ? C21 8D0 1202 A 1 
HETATM 19 C C22 8D0 . . . C 3 -46.437 -157.247 305.47 1 105.85 ? C22 8D0 1202 A 1 
HETATM 20 C C23 8D0 . . . C 3 -46.68 -158.341 304.42 1 104.32 ? C23 8D0 1202 A 1 
HETATM 21 C C24 8D0 . . . C 3 -48.121 -158.874 304.455 1 98.97 ? C24 8D0 1202 A 1 
HETATM 22 C C25 8D0 . . . C 3 -48.463 -159.601 305.766 1 92.44 ? C25 8D0 1202 A 1 
HETATM 23 C C6 8D0 . . . C 3 -42.235 -159.011 309.392 1 83.4 ? C6 8D0 1202 A 1 
HETATM 24 C C7 8D0 . . . C 3 -40.823 -161.065 309.859 1 92.8 ? C7 8D0 1202 A 1 
HETATM 25 C C8 8D0 . . . C 3 -41.72 -161.149 311.119 1 92.27 ? C8 8D0 1202 A 1 
HETATM 26 C C9 8D0 . . . C 3 -42.113 -159.763 311.692 1 84.95 ? C9 8D0 1202 A 1 
HETATM 27 O O1 8D0 . . . C 3 -42.791 -159.059 310.652 1 79.91 ? O1 8D0 1202 A 1 
HETATM 28 O O2 8D0 . . . C 3 -40.569 -164.744 308.038 1 92.58 ? O2 8D0 1202 A 1 
HETATM 29 O O3 8D0 . . . C 3 -39.835 -160.613 307.049 1 93.5 ? O3 8D0 1202 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           37 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#