data_5XRA # _model_server_result.job_id r1c_QTBISERsTlcegrRmEw _model_server_result.datetime_utc '2024-11-27 03:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5XRA # _exptl.entry_id 5XRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XRA _cell.length_a 66.05 _cell.length_b 75.87 _cell.length_c 138.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 159 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 166 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 227 n n N1 C10 FMN doub 228 n n C2 O2 FMN doub 229 n n C2 N3 FMN sing 230 n n N3 C4 FMN sing 231 n n N3 HN3 FMN sing 232 n n C4 O4 FMN doub 233 n n C4 C4A FMN sing 234 n n C4A N5 FMN doub 235 n n C4A C10 FMN sing 236 n n N5 C5A FMN sing 237 n n C5A C6 FMN doub 238 n y C5A C9A FMN sing 239 n y C6 C7 FMN sing 240 n y C6 H6 FMN sing 241 n n C7 C7M FMN sing 242 n n C7 C8 FMN doub 243 n y C7M HM71 FMN sing 244 n n C7M HM72 FMN sing 245 n n C7M HM73 FMN sing 246 n n C8 C8M FMN sing 247 n n C8 C9 FMN sing 248 n y C8M HM81 FMN sing 249 n n C8M HM82 FMN sing 250 n n C8M HM83 FMN sing 251 n n C9 C9A FMN doub 252 n y C9 H9 FMN sing 253 n n C9A N10 FMN sing 254 n n N10 C10 FMN sing 255 n n N10 C1' FMN sing 256 n n C1' C2' FMN sing 257 n n C1' "H1'1" FMN sing 258 n n C1' "H1'2" FMN sing 259 n n C2' O2' FMN sing 260 n n C2' C3' FMN sing 261 n n C2' H2' FMN sing 262 n n O2' HO2' FMN sing 263 n n C3' O3' FMN sing 264 n n C3' C4' FMN sing 265 n n C3' H3' FMN sing 266 n n O3' HO3' FMN sing 267 n n C4' O4' FMN sing 268 n n C4' C5' FMN sing 269 n n C4' H4' FMN sing 270 n n O4' HO4' FMN sing 271 n n C5' O5' FMN sing 272 n n C5' "H5'1" FMN sing 273 n n C5' "H5'2" FMN sing 274 n n O5' P FMN sing 275 n n P O1P FMN doub 276 n n P O2P FMN sing 277 n n P O3P FMN sing 278 n n O2P HOP2 FMN sing 279 n n O3P HOP3 FMN sing 280 n n # _atom_sites.entry_id 5XRA _atom_sites.fract_transf_matrix[1][1] 0.01514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 601 1 FMN FMN . C 3 8D3 A 1 602 1 8D3 ALX . D 4 OLA A 1 603 1 OLA OLA . E 4 OLA A 1 604 2 OLA OLA . F 5 OLC A 1 605 1 OLC OLC . G 5 OLC A 1 606 2 OLC OLC . H 6 PEG A 1 607 1 PEG PEG . I 7 CLR A 1 608 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -41.702 -109.014 246.665 1 68.82 ? N1 FMN 601 A 1 HETATM 2 C C2 FMN . . . B 2 -42.45 -108.31 247.556 1 68.82 ? C2 FMN 601 A 1 HETATM 3 O O2 FMN . . . B 2 -41.99 -108.013 248.608 1 66.78 ? O2 FMN 601 A 1 HETATM 4 N N3 FMN . . . B 2 -43.727 -107.943 247.242 1 69.31 ? N3 FMN 601 A 1 HETATM 5 C C4 FMN . . . B 2 -44.243 -108.276 246.065 1 68.57 ? C4 FMN 601 A 1 HETATM 6 O O4 FMN . . . B 2 -45.351 -107.964 245.782 1 67.82 ? O4 FMN 601 A 1 HETATM 7 C C4A FMN . . . B 2 -43.489 -108.989 245.165 1 69.11 ? C4A FMN 601 A 1 HETATM 8 N N5 FMN . . . B 2 -44.028 -109.321 243.971 1 70.56 ? N5 FMN 601 A 1 HETATM 9 C C5A FMN . . . B 2 -43.306 -110.014 243.081 1 72.25 ? C5A FMN 601 A 1 HETATM 10 C C6 FMN . . . B 2 -43.879 -110.355 241.839 1 72.22 ? C6 FMN 601 A 1 HETATM 11 C C7 FMN . . . B 2 -43.142 -111.071 240.908 1 73.35 ? C7 FMN 601 A 1 HETATM 12 C C7M FMN . . . B 2 -43.882 -111.372 239.608 1 74.07 ? C7M FMN 601 A 1 HETATM 13 C C8 FMN . . . B 2 -41.84 -111.452 241.204 1 75 ? C8 FMN 601 A 1 HETATM 14 C C8M FMN . . . B 2 -41.006 -112.239 240.196 1 76.68 ? C8M FMN 601 A 1 HETATM 15 C C9 FMN . . . B 2 -41.278 -111.115 242.427 1 75.05 ? C9 FMN 601 A 1 HETATM 16 C C9A FMN . . . B 2 -42.022 -110.386 243.38 1 73.9 ? C9A FMN 601 A 1 HETATM 17 N N10 FMN . . . B 2 -41.48 -110.061 244.571 1 72.88 ? N10 FMN 601 A 1 HETATM 18 C C10 FMN . . . B 2 -42.218 -109.354 245.471 1 69.4 ? C10 FMN 601 A 1 HETATM 19 C C1' FMN . . . B 2 -40.13 -110.393 245.028 1 76.1 ? C1' FMN 601 A 1 HETATM 20 C C2' FMN . . . B 2 -40.057 -111.859 245.496 1 77.96 ? C2' FMN 601 A 1 HETATM 21 O O2' FMN . . . B 2 -40.794 -112.037 246.674 1 78.43 ? O2' FMN 601 A 1 HETATM 22 C C3' FMN . . . B 2 -38.606 -112.296 245.732 1 79.68 ? C3' FMN 601 A 1 HETATM 23 O O3' FMN . . . B 2 -38.06 -112.817 244.552 1 80.26 ? O3' FMN 601 A 1 HETATM 24 C C4' FMN . . . B 2 -38.529 -113.354 246.839 1 79.04 ? C4' FMN 601 A 1 HETATM 25 O O4' FMN . . . B 2 -37.269 -113.297 247.448 1 77.87 ? O4' FMN 601 A 1 HETATM 26 C C5' FMN . . . B 2 -38.74 -114.767 246.284 1 77.4 ? C5' FMN 601 A 1 HETATM 27 O O5' FMN . . . B 2 -38.155 -115.676 247.178 1 74.61 ? O5' FMN 601 A 1 HETATM 28 P P FMN . . . B 2 -38.608 -117.264 247.216 1 66.83 ? P FMN 601 A 1 HETATM 29 O O1P FMN . . . B 2 -40.038 -117.429 246.759 1 64.36 ? O1P FMN 601 A 1 HETATM 30 O O2P FMN . . . B 2 -37.707 -118.076 246.319 1 67.99 ? O2P FMN 601 A 1 HETATM 31 O O3P FMN . . . B 2 -38.472 -117.756 248.636 1 64.97 ? O3P FMN 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #