data_5XRA # _model_server_result.job_id v5cDJBMIaWty8DUFRXlGrg _model_server_result.datetime_utc '2024-11-27 03:30:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5XRA # _exptl.entry_id 5XRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 449.464 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description (6aR,10aR)-3-(8-bromanyl-2-methyl-octan-2-yl)-6,6,9-trimethyl-6a,7,10,10a-tetrahydrobenzo[c]chromen-1-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XRA _cell.length_a 66.05 _cell.length_b 75.87 _cell.length_c 138.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 159 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 166 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H37 Br O2' _chem_comp.formula_weight 449.464 _chem_comp.id 8D3 _chem_comp.mon_nstd_flag . _chem_comp.name (6aR,10aR)-3-(8-bromanyl-2-methyl-octan-2-yl)-6,6,9-trimethyl-6a,7,10,10a-tetrahydrobenzo[c]chromen-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 8D3 sing 1 n n C25 BR1 8D3 sing 2 n n C19 C17 8D3 sing 3 n n C24 C23 8D3 sing 4 n n C23 C22 8D3 sing 5 n n C22 C21 8D3 sing 6 n n C21 C18 8D3 sing 7 n n C18 C17 8D3 sing 8 n n C17 C20 8D3 sing 9 n n C17 C3 8D3 sing 10 n n C2 C3 8D3 sing 11 n y C2 C1 8D3 doub 12 n y C3 C4 8D3 doub 13 n y O1 C1 8D3 sing 14 n n C1 C5 8D3 sing 15 n y C4 C7 8D3 sing 16 n y C5 C7 8D3 doub 17 n y C5 C13 8D3 sing 18 n n C12 C11 8D3 sing 19 n n C12 C13 8D3 sing 20 n n C16 C11 8D3 sing 21 n n C7 O2 8D3 sing 22 n n C11 C10 8D3 doub 23 n n C13 C8 8D3 sing 24 n n O2 C6 8D3 sing 25 n n C8 C6 8D3 sing 26 n n C8 C9 8D3 sing 27 n n C10 C9 8D3 sing 28 n n C6 C15 8D3 sing 29 n n C6 C14 8D3 sing 30 n n O1 H1 8D3 sing 31 n n C2 H2 8D3 sing 32 n n C4 H3 8D3 sing 33 n n C10 H4 8D3 sing 34 n n C12 H5 8D3 sing 35 n n C12 H6 8D3 sing 36 n n C13 H7 8D3 sing 37 n n C14 H8 8D3 sing 38 n n C14 H9 8D3 sing 39 n n C14 H10 8D3 sing 40 n n C15 H11 8D3 sing 41 n n C15 H12 8D3 sing 42 n n C15 H13 8D3 sing 43 n n C16 H14 8D3 sing 44 n n C16 H15 8D3 sing 45 n n C16 H16 8D3 sing 46 n n C18 H17 8D3 sing 47 n n C18 H18 8D3 sing 48 n n C19 H19 8D3 sing 49 n n C19 H20 8D3 sing 50 n n C19 H21 8D3 sing 51 n n C20 H22 8D3 sing 52 n n C20 H23 8D3 sing 53 n n C20 H24 8D3 sing 54 n n C21 H25 8D3 sing 55 n n C21 H26 8D3 sing 56 n n C22 H27 8D3 sing 57 n n C22 H28 8D3 sing 58 n n C23 H29 8D3 sing 59 n n C23 H30 8D3 sing 60 n n C24 H31 8D3 sing 61 n n C24 H32 8D3 sing 62 n n C25 H33 8D3 sing 63 n n C25 H34 8D3 sing 64 n n C8 H35 8D3 sing 65 n n C9 H36 8D3 sing 66 n n C9 H37 8D3 sing 67 n n # _atom_sites.entry_id 5XRA _atom_sites.fract_transf_matrix[1][1] 0.01514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 601 1 FMN FMN . C 3 8D3 A 1 602 1 8D3 ALX . D 4 OLA A 1 603 1 OLA OLA . E 4 OLA A 1 604 2 OLA OLA . F 5 OLC A 1 605 1 OLC OLC . G 5 OLC A 1 606 2 OLC OLC . H 6 PEG A 1 607 1 PEG PEG . I 7 CLR A 1 608 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8D3 . . . C 3 -39.903 -164.552 306.043 1 58.33 ? C1 8D3 602 A 1 HETATM 2 O O1 8D3 . . . C 3 -39.004 -165.489 305.62 1 60.51 ? O1 8D3 602 A 1 HETATM 3 O O2 8D3 . . . C 3 -41.883 -163.801 308.965 1 52.8 ? O2 8D3 602 A 1 HETATM 4 C C2 8D3 . . . C 3 -40.234 -163.51 305.189 1 59.63 ? C2 8D3 602 A 1 HETATM 5 C C3 8D3 . . . C 3 -41.142 -162.55 305.603 1 60.34 ? C3 8D3 602 A 1 HETATM 6 C C5 8D3 . . . C 3 -40.472 -164.644 307.33 1 56.27 ? C5 8D3 602 A 1 HETATM 7 C C6 8D3 . . . C 3 -41.403 -164.717 310.006 1 57.55 ? C6 8D3 602 A 1 HETATM 8 C C4 8D3 . . . C 3 -41.72 -162.689 306.855 1 57.65 ? C4 8D3 602 A 1 HETATM 9 C C10 8D3 . . . C 3 -40.264 -168.129 309.641 1 57.61 ? C10 8D3 602 A 1 HETATM 10 C C11 8D3 . . . C 3 -40.254 -168.156 308.247 1 58.04 ? C11 8D3 602 A 1 HETATM 11 C C12 8D3 . . . C 3 -40.459 -166.976 307.509 1 58.27 ? C12 8D3 602 A 1 HETATM 12 C C13 8D3 . . . C 3 -40.191 -165.652 308.265 1 57.91 ? C13 8D3 602 A 1 HETATM 13 C C14 8D3 . . . C 3 -42.477 -164.847 311.087 1 56.69 ? C14 8D3 602 A 1 HETATM 14 C C15 8D3 . . . C 3 -40.107 -164.179 310.625 1 59.27 ? C15 8D3 602 A 1 HETATM 15 C C16 8D3 . . . C 3 -40.038 -169.359 307.582 1 55.97 ? C16 8D3 602 A 1 HETATM 16 C C17 8D3 . . . C 3 -41.492 -161.475 304.778 1 60.52 ? C17 8D3 602 A 1 HETATM 17 C C18 8D3 . . . C 3 -43.005 -161.239 304.73 1 61.69 ? C18 8D3 602 A 1 HETATM 18 C C19 8D3 . . . C 3 -41.009 -161.751 303.355 1 59.05 ? C19 8D3 602 A 1 HETATM 19 C C20 8D3 . . . C 3 -40.799 -160.215 305.291 1 60.32 ? C20 8D3 602 A 1 HETATM 20 C C21 8D3 . . . C 3 -43.733 -162.448 304.138 1 65.48 ? C21 8D3 602 A 1 HETATM 21 C C22 8D3 . . . C 3 -45.235 -162.158 304.09 1 70.24 ? C22 8D3 602 A 1 HETATM 22 C C23 8D3 . . . C 3 -45.965 -163.352 303.464 1 75.68 ? C23 8D3 602 A 1 HETATM 23 C C24 8D3 . . . C 3 -47.465 -163.057 303.404 1 80.55 ? C24 8D3 602 A 1 HETATM 24 C C25 8D3 . . . C 3 -48.229 -164.218 302.754 1 84.59 ? C25 8D3 602 A 1 HETATM 25 C C7 8D3 . . . C 3 -41.23 -163.558 307.805 1 54.46 ? C7 8D3 602 A 1 HETATM 26 C C8 8D3 . . . C 3 -41.238 -165.971 309.314 1 59.8 ? C8 8D3 602 A 1 HETATM 27 C C9 8D3 . . . C 3 -40.483 -166.894 310.237 1 59.27 ? C9 8D3 602 A 1 HETATM 28 BR BR1 8D3 . . . C 3 -48.015 -165.878 303.742 1 87.54 ? BR1 8D3 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #