data_5XRA # _model_server_result.job_id 4XMsBrXfbF-OWw8yy1ZYAw _model_server_result.datetime_utc '2024-11-27 03:43:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 5XRA # _exptl.entry_id 5XRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XRA _cell.length_a 66.05 _cell.length_b 75.87 _cell.length_c 138.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 159 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 257 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 166 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 264 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 486 n n C10 C9 OLC doub 487 n n C10 C11 OLC sing 488 n n C9 C8 OLC sing 489 n n C17 C16 OLC sing 490 z n C11 C12 OLC sing 491 n n C8 C7 OLC sing 492 n n C24 C22 OLC sing 493 n n C24 O25 OLC sing 494 n n C16 C15 OLC sing 495 n n C12 C13 OLC sing 496 n n C7 C6 OLC sing 497 n n C15 C14 OLC sing 498 n n C13 C14 OLC sing 499 n n C6 C5 OLC sing 500 n n C5 C4 OLC sing 501 n n C4 C3 OLC sing 502 n n C3 C2 OLC sing 503 n n C2 C1 OLC sing 504 n n C21 C22 OLC sing 505 n n C21 O20 OLC sing 506 n n C1 O19 OLC doub 507 n n C1 O20 OLC sing 508 n n C22 O23 OLC sing 509 n n C18 H18 OLC sing 510 n n C18 H18A OLC sing 511 n n C18 H18B OLC sing 512 n n C10 H10 OLC sing 513 n n C9 H9 OLC sing 514 n n C17 H17 OLC sing 515 n n C17 H17A OLC sing 516 n n C11 H11 OLC sing 517 n n C11 H11A OLC sing 518 n n C8 H8 OLC sing 519 n n C8 H8A OLC sing 520 n n C24 H24 OLC sing 521 n n C24 H24A OLC sing 522 n n C16 H16 OLC sing 523 n n C16 H16A OLC sing 524 n n C12 H12 OLC sing 525 n n C12 H12A OLC sing 526 n n C7 H7 OLC sing 527 n n C7 H7A OLC sing 528 n n C15 H15 OLC sing 529 n n C15 H15A OLC sing 530 n n C13 H13 OLC sing 531 n n C13 H13A OLC sing 532 n n C6 H6 OLC sing 533 n n C6 H6A OLC sing 534 n n C14 H14 OLC sing 535 n n C14 H14A OLC sing 536 n n C5 H5 OLC sing 537 n n C5 H5A OLC sing 538 n n C4 H4 OLC sing 539 n n C4 H4A OLC sing 540 n n C3 H3 OLC sing 541 n n C3 H3A OLC sing 542 n n C2 H2 OLC sing 543 n n C2 H2A OLC sing 544 n n C21 H21 OLC sing 545 n n C21 H21A OLC sing 546 n n C22 H22 OLC sing 547 n n O25 HO25 OLC sing 548 n n O23 HO23 OLC sing 549 n n # _atom_sites.entry_id 5XRA _atom_sites.fract_transf_matrix[1][1] 0.01514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01318 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 601 1 FMN FMN . C 3 8D3 A 1 602 1 8D3 ALX . D 4 OLA A 1 603 1 OLA OLA . E 4 OLA A 1 604 2 OLA OLA . F 5 OLC A 1 605 1 OLC OLC . G 5 OLC A 1 606 2 OLC OLC . H 6 PEG A 1 607 1 PEG PEG . I 7 CLR A 1 608 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . F 5 -34.083 -153.302 317.637 1 85.36 ? C10 OLC 605 A 1 HETATM 2 C C9 OLC . . . F 5 -33.954 -154.574 317.325 1 88.36 ? C9 OLC 605 A 1 HETATM 3 C C8 OLC . . . F 5 -35.173 -155.495 317.303 1 91.52 ? C8 OLC 605 A 1 HETATM 4 C C24 OLC . . . F 5 -36.112 -166.087 323.455 1 107.11 ? C24 OLC 605 A 1 HETATM 5 C C7 OLC . . . F 5 -35.416 -156.078 318.695 1 93.31 ? C7 OLC 605 A 1 HETATM 6 C C6 OLC . . . F 5 -34.244 -156.972 319.098 1 95.37 ? C6 OLC 605 A 1 HETATM 7 C C5 OLC . . . F 5 -34.64 -158.442 318.969 1 96.76 ? C5 OLC 605 A 1 HETATM 8 C C4 OLC . . . F 5 -33.665 -159.316 319.758 1 97.76 ? C4 OLC 605 A 1 HETATM 9 C C3 OLC . . . F 5 -33.956 -160.79 319.479 1 100.25 ? C3 OLC 605 A 1 HETATM 10 C C2 OLC . . . F 5 -33.683 -161.617 320.736 1 103.02 ? C2 OLC 605 A 1 HETATM 11 C C21 OLC . . . F 5 -34.504 -164.971 321.895 1 105.9 ? C21 OLC 605 A 1 HETATM 12 C C1 OLC . . . F 5 -34.28 -163.016 320.584 1 105.19 ? C1 OLC 605 A 1 HETATM 13 C C22 OLC . . . F 5 -34.773 -165.361 323.35 1 105.9 ? C22 OLC 605 A 1 HETATM 14 O O19 OLC . . . F 5 -34.225 -163.567 319.537 1 105.79 ? O19 OLC 605 A 1 HETATM 15 O O25 OLC . . . F 5 -36.082 -167.245 322.665 1 108.58 ? O25 OLC 605 A 1 HETATM 16 O O23 OLC . . . F 5 -33.75 -166.2 323.811 1 104.25 ? O23 OLC 605 A 1 HETATM 17 O O20 OLC . . . F 5 -34.89 -163.641 321.681 1 105.95 ? O20 OLC 605 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 17 #