data_5XRG # _model_server_result.job_id m145ehqtdcQ_Mt3G5ILUxw _model_server_result.datetime_utc '2024-11-12 22:50:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5XRG # _exptl.entry_id 5XRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XRG _cell.length_a 48.701 _cell.length_b 48.701 _cell.length_c 260.139 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 43.3565 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XRG _atom_sites.fract_transf_matrix[1][1] 0.020533 _atom_sites.fract_transf_matrix[1][2] 0.011855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL B4H . C 3 HOH A 1 301 48 HOH HOH . C 3 HOH A 2 302 112 HOH HOH . C 3 HOH A 3 303 55 HOH HOH . C 3 HOH A 4 304 1 HOH HOH . C 3 HOH A 5 305 128 HOH HOH . C 3 HOH A 6 306 73 HOH HOH . C 3 HOH A 7 307 158 HOH HOH . C 3 HOH A 8 308 76 HOH HOH . C 3 HOH A 9 309 65 HOH HOH . C 3 HOH A 10 310 22 HOH HOH . C 3 HOH A 11 311 27 HOH HOH . C 3 HOH A 12 312 37 HOH HOH . C 3 HOH A 13 313 95 HOH HOH . C 3 HOH A 14 314 107 HOH HOH . C 3 HOH A 15 315 26 HOH HOH . C 3 HOH A 16 316 138 HOH HOH . C 3 HOH A 17 317 155 HOH HOH . C 3 HOH A 18 318 87 HOH HOH . C 3 HOH A 19 319 75 HOH HOH . C 3 HOH A 20 320 151 HOH HOH . C 3 HOH A 21 321 7 HOH HOH . C 3 HOH A 22 322 42 HOH HOH . C 3 HOH A 23 323 171 HOH HOH . C 3 HOH A 24 324 81 HOH HOH . C 3 HOH A 25 325 11 HOH HOH . C 3 HOH A 26 326 17 HOH HOH . C 3 HOH A 27 327 183 HOH HOH . C 3 HOH A 28 328 13 HOH HOH . C 3 HOH A 29 329 16 HOH HOH . C 3 HOH A 30 330 89 HOH HOH . C 3 HOH A 31 331 182 HOH HOH . C 3 HOH A 32 332 5 HOH HOH . C 3 HOH A 33 333 9 HOH HOH . C 3 HOH A 34 334 160 HOH HOH . C 3 HOH A 35 335 69 HOH HOH . C 3 HOH A 36 336 29 HOH HOH . C 3 HOH A 37 337 20 HOH HOH . C 3 HOH A 38 338 187 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 189 HOH HOH . C 3 HOH A 41 341 10 HOH HOH . C 3 HOH A 42 342 103 HOH HOH . C 3 HOH A 43 343 105 HOH HOH . C 3 HOH A 44 344 97 HOH HOH . C 3 HOH A 45 345 60 HOH HOH . C 3 HOH A 46 346 34 HOH HOH . C 3 HOH A 47 347 23 HOH HOH . C 3 HOH A 48 348 4 HOH HOH . C 3 HOH A 49 349 32 HOH HOH . C 3 HOH A 50 350 63 HOH HOH . C 3 HOH A 51 351 143 HOH HOH . C 3 HOH A 52 352 91 HOH HOH . C 3 HOH A 53 353 100 HOH HOH . C 3 HOH A 54 354 15 HOH HOH . C 3 HOH A 55 355 30 HOH HOH . C 3 HOH A 56 356 101 HOH HOH . C 3 HOH A 57 357 68 HOH HOH . C 3 HOH A 58 358 35 HOH HOH . C 3 HOH A 59 359 92 HOH HOH . C 3 HOH A 60 360 137 HOH HOH . C 3 HOH A 61 361 36 HOH HOH . C 3 HOH A 62 362 79 HOH HOH . C 3 HOH A 63 363 3 HOH HOH . C 3 HOH A 64 364 161 HOH HOH . C 3 HOH A 65 365 31 HOH HOH . C 3 HOH A 66 366 57 HOH HOH . C 3 HOH A 67 367 117 HOH HOH . C 3 HOH A 68 368 18 HOH HOH . C 3 HOH A 69 369 85 HOH HOH . C 3 HOH A 70 370 124 HOH HOH . C 3 HOH A 71 371 47 HOH HOH . C 3 HOH A 72 372 82 HOH HOH . C 3 HOH A 73 373 53 HOH HOH . C 3 HOH A 74 374 88 HOH HOH . C 3 HOH A 75 375 40 HOH HOH . C 3 HOH A 76 376 25 HOH HOH . C 3 HOH A 77 377 2 HOH HOH . C 3 HOH A 78 378 62 HOH HOH . C 3 HOH A 79 379 46 HOH HOH . C 3 HOH A 80 380 6 HOH HOH . C 3 HOH A 81 381 56 HOH HOH . C 3 HOH A 82 382 86 HOH HOH . C 3 HOH A 83 383 51 HOH HOH . C 3 HOH A 84 384 64 HOH HOH . C 3 HOH A 85 385 169 HOH HOH . C 3 HOH A 86 386 184 HOH HOH . C 3 HOH A 87 387 49 HOH HOH . C 3 HOH A 88 388 125 HOH HOH . C 3 HOH A 89 389 45 HOH HOH . C 3 HOH A 90 390 44 HOH HOH . C 3 HOH A 91 391 71 HOH HOH . C 3 HOH A 92 392 38 HOH HOH . C 3 HOH A 93 393 43 HOH HOH . C 3 HOH A 94 394 52 HOH HOH . C 3 HOH A 95 395 8 HOH HOH . C 3 HOH A 96 396 177 HOH HOH . C 3 HOH A 97 397 28 HOH HOH . C 3 HOH A 98 398 116 HOH HOH . C 3 HOH A 99 399 83 HOH HOH . C 3 HOH A 100 400 129 HOH HOH . C 3 HOH A 101 401 78 HOH HOH . C 3 HOH A 102 402 77 HOH HOH . C 3 HOH A 103 403 61 HOH HOH . C 3 HOH A 104 404 54 HOH HOH . C 3 HOH A 105 405 58 HOH HOH . C 3 HOH A 106 406 14 HOH HOH . C 3 HOH A 107 407 33 HOH HOH . C 3 HOH A 108 408 190 HOH HOH . C 3 HOH A 109 409 93 HOH HOH . C 3 HOH A 110 410 67 HOH HOH . C 3 HOH A 111 411 94 HOH HOH . C 3 HOH A 112 412 12 HOH HOH . C 3 HOH A 113 413 70 HOH HOH . C 3 HOH A 114 414 24 HOH HOH . C 3 HOH A 115 415 50 HOH HOH . C 3 HOH A 116 416 74 HOH HOH . C 3 HOH A 117 417 167 HOH HOH . C 3 HOH A 118 418 113 HOH HOH . C 3 HOH A 119 419 141 HOH HOH . C 3 HOH A 120 420 21 HOH HOH . C 3 HOH A 121 421 145 HOH HOH . C 3 HOH A 122 422 106 HOH HOH . C 3 HOH A 123 423 122 HOH HOH . C 3 HOH A 124 424 133 HOH HOH . C 3 HOH A 125 425 59 HOH HOH . C 3 HOH A 126 426 72 HOH HOH . C 3 HOH A 127 427 142 HOH HOH . C 3 HOH A 128 428 41 HOH HOH . C 3 HOH A 129 429 121 HOH HOH . C 3 HOH A 130 430 172 HOH HOH . C 3 HOH A 131 431 157 HOH HOH . C 3 HOH A 132 432 102 HOH HOH . C 3 HOH A 133 433 165 HOH HOH . C 3 HOH A 134 434 96 HOH HOH . C 3 HOH A 135 435 176 HOH HOH . C 3 HOH A 136 436 131 HOH HOH . C 3 HOH A 137 437 166 HOH HOH . C 3 HOH A 138 438 108 HOH HOH . C 3 HOH A 139 439 98 HOH HOH . C 3 HOH A 140 440 147 HOH HOH . C 3 HOH A 141 441 136 HOH HOH . C 3 HOH A 142 442 146 HOH HOH . C 3 HOH A 143 443 66 HOH HOH . C 3 HOH A 144 444 134 HOH HOH . C 3 HOH A 145 445 180 HOH HOH . C 3 HOH A 146 446 156 HOH HOH . C 3 HOH A 147 447 104 HOH HOH . C 3 HOH A 148 448 186 HOH HOH . C 3 HOH A 149 449 90 HOH HOH . C 3 HOH A 150 450 130 HOH HOH . C 3 HOH A 151 451 181 HOH HOH . C 3 HOH A 152 452 80 HOH HOH . C 3 HOH A 153 453 114 HOH HOH . C 3 HOH A 154 454 185 HOH HOH . C 3 HOH A 155 455 150 HOH HOH . C 3 HOH A 156 456 170 HOH HOH . C 3 HOH A 157 457 132 HOH HOH . C 3 HOH A 158 458 152 HOH HOH . C 3 HOH A 159 459 163 HOH HOH . C 3 HOH A 160 460 179 HOH HOH . C 3 HOH A 161 461 162 HOH HOH . C 3 HOH A 162 462 159 HOH HOH . C 3 HOH A 163 463 175 HOH HOH . C 3 HOH A 164 464 84 HOH HOH . C 3 HOH A 165 465 110 HOH HOH . C 3 HOH A 166 466 153 HOH HOH . C 3 HOH A 167 467 111 HOH HOH . C 3 HOH A 168 468 149 HOH HOH . C 3 HOH A 169 469 123 HOH HOH . C 3 HOH A 170 470 126 HOH HOH . C 3 HOH A 171 471 140 HOH HOH . C 3 HOH A 172 472 127 HOH HOH . C 3 HOH A 173 473 135 HOH HOH . C 3 HOH A 174 474 173 HOH HOH . C 3 HOH A 175 475 168 HOH HOH . C 3 HOH A 176 476 119 HOH HOH . C 3 HOH A 177 477 164 HOH HOH . C 3 HOH A 178 478 148 HOH HOH . C 3 HOH A 179 479 120 HOH HOH . C 3 HOH A 180 480 99 HOH HOH . C 3 HOH A 181 481 154 HOH HOH . C 3 HOH A 182 482 118 HOH HOH . C 3 HOH A 183 483 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 18.691 -7.392 12.577 1 25.06 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 17.376 -6.988 12.424 1 31.51 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 19.439 -6.493 13.557 1 26.88 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 18.659 -6.282 14.702 1 39.75 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 20.648 -7.286 14.015 1 25.46 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 20.154 -8.539 14.427 1 22.88 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #