data_5XRI # _model_server_result.job_id g5NlAn_KvCvh2hkTAt91Og _model_server_result.datetime_utc '2024-10-10 10:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5XRI # _exptl.entry_id 5XRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XRI _cell.length_a 48.937 _cell.length_b 48.937 _cell.length_c 258.665 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 x-y+1,-y+1,-z 1 0 0 0 -1 0 0 0 -1 24.4685 42.380685 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XRI _atom_sites.fract_transf_matrix[1][1] 0.020434 _atom_sites.fract_transf_matrix[1][2] 0.011798 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL B4H . C 3 HOH A 1 301 11 HOH HOH . C 3 HOH A 2 302 103 HOH HOH . C 3 HOH A 3 303 70 HOH HOH . C 3 HOH A 4 304 81 HOH HOH . C 3 HOH A 5 305 102 HOH HOH . C 3 HOH A 6 306 150 HOH HOH . C 3 HOH A 7 307 21 HOH HOH . C 3 HOH A 8 308 126 HOH HOH . C 3 HOH A 9 309 77 HOH HOH . C 3 HOH A 10 310 48 HOH HOH . C 3 HOH A 11 311 121 HOH HOH . C 3 HOH A 12 312 108 HOH HOH . C 3 HOH A 13 313 85 HOH HOH . C 3 HOH A 14 314 73 HOH HOH . C 3 HOH A 15 315 93 HOH HOH . C 3 HOH A 16 316 42 HOH HOH . C 3 HOH A 17 317 98 HOH HOH . C 3 HOH A 18 318 1 HOH HOH . C 3 HOH A 19 319 54 HOH HOH . C 3 HOH A 20 320 10 HOH HOH . C 3 HOH A 21 321 39 HOH HOH . C 3 HOH A 22 322 40 HOH HOH . C 3 HOH A 23 323 156 HOH HOH . C 3 HOH A 24 324 63 HOH HOH . C 3 HOH A 25 325 132 HOH HOH . C 3 HOH A 26 326 6 HOH HOH . C 3 HOH A 27 327 16 HOH HOH . C 3 HOH A 28 328 61 HOH HOH . C 3 HOH A 29 329 27 HOH HOH . C 3 HOH A 30 330 71 HOH HOH . C 3 HOH A 31 331 26 HOH HOH . C 3 HOH A 32 332 9 HOH HOH . C 3 HOH A 33 333 113 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 24 HOH HOH . C 3 HOH A 36 336 38 HOH HOH . C 3 HOH A 37 337 80 HOH HOH . C 3 HOH A 38 338 101 HOH HOH . C 3 HOH A 39 339 2 HOH HOH . C 3 HOH A 40 340 65 HOH HOH . C 3 HOH A 41 341 89 HOH HOH . C 3 HOH A 42 342 49 HOH HOH . C 3 HOH A 43 343 162 HOH HOH . C 3 HOH A 44 344 22 HOH HOH . C 3 HOH A 45 345 92 HOH HOH . C 3 HOH A 46 346 151 HOH HOH . C 3 HOH A 47 347 84 HOH HOH . C 3 HOH A 48 348 12 HOH HOH . C 3 HOH A 49 349 44 HOH HOH . C 3 HOH A 50 350 33 HOH HOH . C 3 HOH A 51 351 41 HOH HOH . C 3 HOH A 52 352 20 HOH HOH . C 3 HOH A 53 353 96 HOH HOH . C 3 HOH A 54 354 67 HOH HOH . C 3 HOH A 55 355 45 HOH HOH . C 3 HOH A 56 356 88 HOH HOH . C 3 HOH A 57 357 37 HOH HOH . C 3 HOH A 58 358 166 HOH HOH . C 3 HOH A 59 359 58 HOH HOH . C 3 HOH A 60 360 95 HOH HOH . C 3 HOH A 61 361 32 HOH HOH . C 3 HOH A 62 362 46 HOH HOH . C 3 HOH A 63 363 8 HOH HOH . C 3 HOH A 64 364 19 HOH HOH . C 3 HOH A 65 365 60 HOH HOH . C 3 HOH A 66 366 14 HOH HOH . C 3 HOH A 67 367 25 HOH HOH . C 3 HOH A 68 368 17 HOH HOH . C 3 HOH A 69 369 107 HOH HOH . C 3 HOH A 70 370 13 HOH HOH . C 3 HOH A 71 371 47 HOH HOH . C 3 HOH A 72 372 3 HOH HOH . C 3 HOH A 73 373 28 HOH HOH . C 3 HOH A 74 374 69 HOH HOH . C 3 HOH A 75 375 30 HOH HOH . C 3 HOH A 76 376 18 HOH HOH . C 3 HOH A 77 377 51 HOH HOH . C 3 HOH A 78 378 75 HOH HOH . C 3 HOH A 79 379 114 HOH HOH . C 3 HOH A 80 380 31 HOH HOH . C 3 HOH A 81 381 35 HOH HOH . C 3 HOH A 82 382 7 HOH HOH . C 3 HOH A 83 383 52 HOH HOH . C 3 HOH A 84 384 72 HOH HOH . C 3 HOH A 85 385 56 HOH HOH . C 3 HOH A 86 386 23 HOH HOH . C 3 HOH A 87 387 157 HOH HOH . C 3 HOH A 88 388 34 HOH HOH . C 3 HOH A 89 389 43 HOH HOH . C 3 HOH A 90 390 94 HOH HOH . C 3 HOH A 91 391 55 HOH HOH . C 3 HOH A 92 392 83 HOH HOH . C 3 HOH A 93 393 79 HOH HOH . C 3 HOH A 94 394 97 HOH HOH . C 3 HOH A 95 395 134 HOH HOH . C 3 HOH A 96 396 139 HOH HOH . C 3 HOH A 97 397 29 HOH HOH . C 3 HOH A 98 398 106 HOH HOH . C 3 HOH A 99 399 66 HOH HOH . C 3 HOH A 100 400 15 HOH HOH . C 3 HOH A 101 401 36 HOH HOH . C 3 HOH A 102 402 149 HOH HOH . C 3 HOH A 103 403 167 HOH HOH . C 3 HOH A 104 404 64 HOH HOH . C 3 HOH A 105 405 122 HOH HOH . C 3 HOH A 106 406 115 HOH HOH . C 3 HOH A 107 407 136 HOH HOH . C 3 HOH A 108 408 163 HOH HOH . C 3 HOH A 109 409 161 HOH HOH . C 3 HOH A 110 410 53 HOH HOH . C 3 HOH A 111 411 50 HOH HOH . C 3 HOH A 112 412 123 HOH HOH . C 3 HOH A 113 413 82 HOH HOH . C 3 HOH A 114 414 129 HOH HOH . C 3 HOH A 115 415 111 HOH HOH . C 3 HOH A 116 416 160 HOH HOH . C 3 HOH A 117 417 57 HOH HOH . C 3 HOH A 118 418 120 HOH HOH . C 3 HOH A 119 419 143 HOH HOH . C 3 HOH A 120 420 153 HOH HOH . C 3 HOH A 121 421 140 HOH HOH . C 3 HOH A 122 422 104 HOH HOH . C 3 HOH A 123 423 147 HOH HOH . C 3 HOH A 124 424 125 HOH HOH . C 3 HOH A 125 425 116 HOH HOH . C 3 HOH A 126 426 135 HOH HOH . C 3 HOH A 127 427 131 HOH HOH . C 3 HOH A 128 428 159 HOH HOH . C 3 HOH A 129 429 86 HOH HOH . C 3 HOH A 130 430 141 HOH HOH . C 3 HOH A 131 431 133 HOH HOH . C 3 HOH A 132 432 112 HOH HOH . C 3 HOH A 133 433 109 HOH HOH . C 3 HOH A 134 434 137 HOH HOH . C 3 HOH A 135 435 59 HOH HOH . C 3 HOH A 136 436 154 HOH HOH . C 3 HOH A 137 437 142 HOH HOH . C 3 HOH A 138 438 78 HOH HOH . C 3 HOH A 139 439 146 HOH HOH . C 3 HOH A 140 440 145 HOH HOH . C 3 HOH A 141 441 119 HOH HOH . C 3 HOH A 142 442 68 HOH HOH . C 3 HOH A 143 443 62 HOH HOH . C 3 HOH A 144 444 91 HOH HOH . C 3 HOH A 145 445 158 HOH HOH . C 3 HOH A 146 446 152 HOH HOH . C 3 HOH A 147 447 90 HOH HOH . C 3 HOH A 148 448 117 HOH HOH . C 3 HOH A 149 449 138 HOH HOH . C 3 HOH A 150 450 110 HOH HOH . C 3 HOH A 151 451 118 HOH HOH . C 3 HOH A 152 452 87 HOH HOH . C 3 HOH A 153 453 148 HOH HOH . C 3 HOH A 154 454 105 HOH HOH . C 3 HOH A 155 455 100 HOH HOH . C 3 HOH A 156 456 128 HOH HOH . C 3 HOH A 157 457 127 HOH HOH . C 3 HOH A 158 458 74 HOH HOH . C 3 HOH A 159 459 155 HOH HOH . C 3 HOH A 160 460 144 HOH HOH . C 3 HOH A 161 461 76 HOH HOH . C 3 HOH A 162 462 99 HOH HOH . C 3 HOH A 163 463 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 42.789 35.207 12.595 1 21.29 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 41.456 35.558 12.602 1 29.03 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 43.532 35.927 13.702 1 23.15 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 42.73 35.978 14.855 1 40.79 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 44.624 34.939 14.029 1 23.13 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 43.954 33.743 14.304 1 20.97 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #