data_5XRL # _model_server_result.job_id wz082qMOEsk5QdV4mmvAPg _model_server_result.datetime_utc '2025-01-10 21:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xrl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5XRL # _exptl.entry_id 5XRL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XRL _cell.length_a 49.057 _cell.length_b 49.057 _cell.length_c 259.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XRL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 43.171667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XRL _atom_sites.fract_transf_matrix[1][1] 0.020384 _atom_sites.fract_transf_matrix[1][2] 0.011769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023538 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL B4H . C 3 HOH A 1 301 78 HOH HOH . C 3 HOH A 2 302 66 HOH HOH . C 3 HOH A 3 303 12 HOH HOH . C 3 HOH A 4 304 127 HOH HOH . C 3 HOH A 5 305 81 HOH HOH . C 3 HOH A 6 306 103 HOH HOH . C 3 HOH A 7 307 59 HOH HOH . C 3 HOH A 8 308 40 HOH HOH . C 3 HOH A 9 309 6 HOH HOH . C 3 HOH A 10 310 112 HOH HOH . C 3 HOH A 11 311 2 HOH HOH . C 3 HOH A 12 312 1 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 30 HOH HOH . C 3 HOH A 15 315 43 HOH HOH . C 3 HOH A 16 316 17 HOH HOH . C 3 HOH A 17 317 79 HOH HOH . C 3 HOH A 18 318 89 HOH HOH . C 3 HOH A 19 319 85 HOH HOH . C 3 HOH A 20 320 21 HOH HOH . C 3 HOH A 21 321 115 HOH HOH . C 3 HOH A 22 322 31 HOH HOH . C 3 HOH A 23 323 3 HOH HOH . C 3 HOH A 24 324 5 HOH HOH . C 3 HOH A 25 325 104 HOH HOH . C 3 HOH A 26 326 99 HOH HOH . C 3 HOH A 27 327 117 HOH HOH . C 3 HOH A 28 328 42 HOH HOH . C 3 HOH A 29 329 54 HOH HOH . C 3 HOH A 30 330 120 HOH HOH . C 3 HOH A 31 331 16 HOH HOH . C 3 HOH A 32 332 53 HOH HOH . C 3 HOH A 33 333 35 HOH HOH . C 3 HOH A 34 334 63 HOH HOH . C 3 HOH A 35 335 18 HOH HOH . C 3 HOH A 36 336 7 HOH HOH . C 3 HOH A 37 337 108 HOH HOH . C 3 HOH A 38 338 14 HOH HOH . C 3 HOH A 39 339 45 HOH HOH . C 3 HOH A 40 340 131 HOH HOH . C 3 HOH A 41 341 107 HOH HOH . C 3 HOH A 42 342 32 HOH HOH . C 3 HOH A 43 343 118 HOH HOH . C 3 HOH A 44 344 110 HOH HOH . C 3 HOH A 45 345 71 HOH HOH . C 3 HOH A 46 346 114 HOH HOH . C 3 HOH A 47 347 8 HOH HOH . C 3 HOH A 48 348 62 HOH HOH . C 3 HOH A 49 349 113 HOH HOH . C 3 HOH A 50 350 39 HOH HOH . C 3 HOH A 51 351 50 HOH HOH . C 3 HOH A 52 352 33 HOH HOH . C 3 HOH A 53 353 38 HOH HOH . C 3 HOH A 54 354 57 HOH HOH . C 3 HOH A 55 355 84 HOH HOH . C 3 HOH A 56 356 20 HOH HOH . C 3 HOH A 57 357 36 HOH HOH . C 3 HOH A 58 358 49 HOH HOH . C 3 HOH A 59 359 93 HOH HOH . C 3 HOH A 60 360 64 HOH HOH . C 3 HOH A 61 361 56 HOH HOH . C 3 HOH A 62 362 94 HOH HOH . C 3 HOH A 63 363 27 HOH HOH . C 3 HOH A 64 364 51 HOH HOH . C 3 HOH A 65 365 26 HOH HOH . C 3 HOH A 66 366 23 HOH HOH . C 3 HOH A 67 367 4 HOH HOH . C 3 HOH A 68 368 68 HOH HOH . C 3 HOH A 69 369 41 HOH HOH . C 3 HOH A 70 370 15 HOH HOH . C 3 HOH A 71 371 102 HOH HOH . C 3 HOH A 72 372 77 HOH HOH . C 3 HOH A 73 373 69 HOH HOH . C 3 HOH A 74 374 25 HOH HOH . C 3 HOH A 75 375 34 HOH HOH . C 3 HOH A 76 376 11 HOH HOH . C 3 HOH A 77 377 105 HOH HOH . C 3 HOH A 78 378 24 HOH HOH . C 3 HOH A 79 379 19 HOH HOH . C 3 HOH A 80 380 10 HOH HOH . C 3 HOH A 81 381 47 HOH HOH . C 3 HOH A 82 382 48 HOH HOH . C 3 HOH A 83 383 58 HOH HOH . C 3 HOH A 84 384 74 HOH HOH . C 3 HOH A 85 385 60 HOH HOH . C 3 HOH A 86 386 73 HOH HOH . C 3 HOH A 87 387 129 HOH HOH . C 3 HOH A 88 388 65 HOH HOH . C 3 HOH A 89 389 22 HOH HOH . C 3 HOH A 90 390 86 HOH HOH . C 3 HOH A 91 391 130 HOH HOH . C 3 HOH A 92 392 109 HOH HOH . C 3 HOH A 93 393 123 HOH HOH . C 3 HOH A 94 394 72 HOH HOH . C 3 HOH A 95 395 101 HOH HOH . C 3 HOH A 96 396 126 HOH HOH . C 3 HOH A 97 397 44 HOH HOH . C 3 HOH A 98 398 28 HOH HOH . C 3 HOH A 99 399 37 HOH HOH . C 3 HOH A 100 400 76 HOH HOH . C 3 HOH A 101 401 116 HOH HOH . C 3 HOH A 102 402 29 HOH HOH . C 3 HOH A 103 403 122 HOH HOH . C 3 HOH A 104 404 95 HOH HOH . C 3 HOH A 105 405 67 HOH HOH . C 3 HOH A 106 406 106 HOH HOH . C 3 HOH A 107 407 46 HOH HOH . C 3 HOH A 108 408 125 HOH HOH . C 3 HOH A 109 409 128 HOH HOH . C 3 HOH A 110 410 100 HOH HOH . C 3 HOH A 111 411 97 HOH HOH . C 3 HOH A 112 412 124 HOH HOH . C 3 HOH A 113 413 70 HOH HOH . C 3 HOH A 114 414 61 HOH HOH . C 3 HOH A 115 415 98 HOH HOH . C 3 HOH A 116 416 80 HOH HOH . C 3 HOH A 117 417 75 HOH HOH . C 3 HOH A 118 418 52 HOH HOH . C 3 HOH A 119 419 90 HOH HOH . C 3 HOH A 120 420 83 HOH HOH . C 3 HOH A 121 421 96 HOH HOH . C 3 HOH A 122 422 91 HOH HOH . C 3 HOH A 123 423 121 HOH HOH . C 3 HOH A 124 424 119 HOH HOH . C 3 HOH A 125 425 92 HOH HOH . C 3 HOH A 126 426 82 HOH HOH . C 3 HOH A 127 427 111 HOH HOH . C 3 HOH A 128 428 87 HOH HOH . C 3 HOH A 129 429 88 HOH HOH . C 3 HOH A 130 430 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 18.304 -6.295 12.963 1 43.37 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 17.888 -7.603 12.637 1 46.82 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 19.414 -6.334 14.02 1 39.63 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 18.966 -5.916 15.285 1 47.03 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 19.992 -7.739 14.135 1 31.15 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 18.997 -8.709 14.29 1 35.02 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #