data_5XRN # _model_server_result.job_id 1l4p0aqGHSGrYEokilNRaw _model_server_result.datetime_utc '2025-06-24 01:51:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xrn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5XRN # _exptl.entry_id 5XRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XRN _cell.length_a 48.962 _cell.length_b 48.962 _cell.length_c 259.23 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 43.205 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5XRN _atom_sites.fract_transf_matrix[1][1] 0.020424 _atom_sites.fract_transf_matrix[1][2] 0.011792 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL B4H . C 3 HOH A 1 301 79 HOH HOH . C 3 HOH A 2 302 172 HOH HOH . C 3 HOH A 3 303 117 HOH HOH . C 3 HOH A 4 304 27 HOH HOH . C 3 HOH A 5 305 21 HOH HOH . C 3 HOH A 6 306 68 HOH HOH . C 3 HOH A 7 307 162 HOH HOH . C 3 HOH A 8 308 78 HOH HOH . C 3 HOH A 9 309 51 HOH HOH . C 3 HOH A 10 310 88 HOH HOH . C 3 HOH A 11 311 65 HOH HOH . C 3 HOH A 12 312 75 HOH HOH . C 3 HOH A 13 313 106 HOH HOH . C 3 HOH A 14 314 63 HOH HOH . C 3 HOH A 15 315 26 HOH HOH . C 3 HOH A 16 316 110 HOH HOH . C 3 HOH A 17 317 1 HOH HOH . C 3 HOH A 18 318 23 HOH HOH . C 3 HOH A 19 319 54 HOH HOH . C 3 HOH A 20 320 7 HOH HOH . C 3 HOH A 21 321 28 HOH HOH . C 3 HOH A 22 322 113 HOH HOH . C 3 HOH A 23 323 146 HOH HOH . C 3 HOH A 24 324 139 HOH HOH . C 3 HOH A 25 325 67 HOH HOH . C 3 HOH A 26 326 143 HOH HOH . C 3 HOH A 27 327 49 HOH HOH . C 3 HOH A 28 328 153 HOH HOH . C 3 HOH A 29 329 4 HOH HOH . C 3 HOH A 30 330 48 HOH HOH . C 3 HOH A 31 331 45 HOH HOH . C 3 HOH A 32 332 24 HOH HOH . C 3 HOH A 33 333 89 HOH HOH . C 3 HOH A 34 334 35 HOH HOH . C 3 HOH A 35 335 17 HOH HOH . C 3 HOH A 36 336 42 HOH HOH . C 3 HOH A 37 337 116 HOH HOH . C 3 HOH A 38 338 156 HOH HOH . C 3 HOH A 39 339 6 HOH HOH . C 3 HOH A 40 340 105 HOH HOH . C 3 HOH A 41 341 77 HOH HOH . C 3 HOH A 42 342 64 HOH HOH . C 3 HOH A 43 343 170 HOH HOH . C 3 HOH A 44 344 73 HOH HOH . C 3 HOH A 45 345 3 HOH HOH . C 3 HOH A 46 346 44 HOH HOH . C 3 HOH A 47 347 25 HOH HOH . C 3 HOH A 48 348 92 HOH HOH . C 3 HOH A 49 349 8 HOH HOH . C 3 HOH A 50 350 100 HOH HOH . C 3 HOH A 51 351 10 HOH HOH . C 3 HOH A 52 352 20 HOH HOH . C 3 HOH A 53 353 50 HOH HOH . C 3 HOH A 54 354 19 HOH HOH . C 3 HOH A 55 355 163 HOH HOH . C 3 HOH A 56 356 13 HOH HOH . C 3 HOH A 57 357 86 HOH HOH . C 3 HOH A 58 358 18 HOH HOH . C 3 HOH A 59 359 104 HOH HOH . C 3 HOH A 60 360 33 HOH HOH . C 3 HOH A 61 361 90 HOH HOH . C 3 HOH A 62 362 91 HOH HOH . C 3 HOH A 63 363 85 HOH HOH . C 3 HOH A 64 364 101 HOH HOH . C 3 HOH A 65 365 5 HOH HOH . C 3 HOH A 66 366 34 HOH HOH . C 3 HOH A 67 367 69 HOH HOH . C 3 HOH A 68 368 30 HOH HOH . C 3 HOH A 69 369 41 HOH HOH . C 3 HOH A 70 370 93 HOH HOH . C 3 HOH A 71 371 72 HOH HOH . C 3 HOH A 72 372 57 HOH HOH . C 3 HOH A 73 373 2 HOH HOH . C 3 HOH A 74 374 36 HOH HOH . C 3 HOH A 75 375 126 HOH HOH . C 3 HOH A 76 376 62 HOH HOH . C 3 HOH A 77 377 47 HOH HOH . C 3 HOH A 78 378 95 HOH HOH . C 3 HOH A 79 379 14 HOH HOH . C 3 HOH A 80 380 60 HOH HOH . C 3 HOH A 81 381 31 HOH HOH . C 3 HOH A 82 382 114 HOH HOH . C 3 HOH A 83 383 150 HOH HOH . C 3 HOH A 84 384 97 HOH HOH . C 3 HOH A 85 385 121 HOH HOH . C 3 HOH A 86 386 161 HOH HOH . C 3 HOH A 87 387 169 HOH HOH . C 3 HOH A 88 388 40 HOH HOH . C 3 HOH A 89 389 130 HOH HOH . C 3 HOH A 90 390 9 HOH HOH . C 3 HOH A 91 391 166 HOH HOH . C 3 HOH A 92 392 81 HOH HOH . C 3 HOH A 93 393 16 HOH HOH . C 3 HOH A 94 394 38 HOH HOH . C 3 HOH A 95 395 155 HOH HOH . C 3 HOH A 96 396 15 HOH HOH . C 3 HOH A 97 397 74 HOH HOH . C 3 HOH A 98 398 76 HOH HOH . C 3 HOH A 99 399 112 HOH HOH . C 3 HOH A 100 400 53 HOH HOH . C 3 HOH A 101 401 29 HOH HOH . C 3 HOH A 102 402 32 HOH HOH . C 3 HOH A 103 403 56 HOH HOH . C 3 HOH A 104 404 52 HOH HOH . C 3 HOH A 105 405 46 HOH HOH . C 3 HOH A 106 406 87 HOH HOH . C 3 HOH A 107 407 12 HOH HOH . C 3 HOH A 108 408 11 HOH HOH . C 3 HOH A 109 409 80 HOH HOH . C 3 HOH A 110 410 128 HOH HOH . C 3 HOH A 111 411 83 HOH HOH . C 3 HOH A 112 412 70 HOH HOH . C 3 HOH A 113 413 43 HOH HOH . C 3 HOH A 114 414 37 HOH HOH . C 3 HOH A 115 415 108 HOH HOH . C 3 HOH A 116 416 141 HOH HOH . C 3 HOH A 117 417 149 HOH HOH . C 3 HOH A 118 418 137 HOH HOH . C 3 HOH A 119 419 96 HOH HOH . C 3 HOH A 120 420 132 HOH HOH . C 3 HOH A 121 421 134 HOH HOH . C 3 HOH A 122 422 154 HOH HOH . C 3 HOH A 123 423 39 HOH HOH . C 3 HOH A 124 424 84 HOH HOH . C 3 HOH A 125 425 55 HOH HOH . C 3 HOH A 126 426 109 HOH HOH . C 3 HOH A 127 427 168 HOH HOH . C 3 HOH A 128 428 129 HOH HOH . C 3 HOH A 129 429 103 HOH HOH . C 3 HOH A 130 430 71 HOH HOH . C 3 HOH A 131 431 160 HOH HOH . C 3 HOH A 132 432 152 HOH HOH . C 3 HOH A 133 433 119 HOH HOH . C 3 HOH A 134 434 102 HOH HOH . C 3 HOH A 135 435 122 HOH HOH . C 3 HOH A 136 436 133 HOH HOH . C 3 HOH A 137 437 145 HOH HOH . C 3 HOH A 138 438 124 HOH HOH . C 3 HOH A 139 439 164 HOH HOH . C 3 HOH A 140 440 138 HOH HOH . C 3 HOH A 141 441 123 HOH HOH . C 3 HOH A 142 442 171 HOH HOH . C 3 HOH A 143 443 99 HOH HOH . C 3 HOH A 144 444 111 HOH HOH . C 3 HOH A 145 445 157 HOH HOH . C 3 HOH A 146 446 142 HOH HOH . C 3 HOH A 147 447 136 HOH HOH . C 3 HOH A 148 448 107 HOH HOH . C 3 HOH A 149 449 120 HOH HOH . C 3 HOH A 150 450 127 HOH HOH . C 3 HOH A 151 451 66 HOH HOH . C 3 HOH A 152 452 59 HOH HOH . C 3 HOH A 153 453 58 HOH HOH . C 3 HOH A 154 454 147 HOH HOH . C 3 HOH A 155 455 118 HOH HOH . C 3 HOH A 156 456 144 HOH HOH . C 3 HOH A 157 457 148 HOH HOH . C 3 HOH A 158 458 115 HOH HOH . C 3 HOH A 159 459 135 HOH HOH . C 3 HOH A 160 460 131 HOH HOH . C 3 HOH A 161 461 167 HOH HOH . C 3 HOH A 162 462 151 HOH HOH . C 3 HOH A 163 463 159 HOH HOH . C 3 HOH A 164 464 125 HOH HOH . C 3 HOH A 165 465 98 HOH HOH . C 3 HOH A 166 466 158 HOH HOH . C 3 HOH A 167 467 165 HOH HOH . C 3 HOH A 168 468 61 HOH HOH . C 3 HOH A 169 469 140 HOH HOH . C 3 HOH A 170 470 82 HOH HOH . C 3 HOH A 171 471 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -19.243 8.297 14.171 1 27.34 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 -20.276 9.04 14.747 1 36.8 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 -19.701 6.865 13.964 1 31.15 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 -19.886 6.277 15.223 1 41.71 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 -18.564 6.163 13.232 1 29.34 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 -17.741 7.146 12.658 1 23.11 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #