data_5XSR # _model_server_result.job_id gyxd_aYdLxGEaXgt810AfQ _model_server_result.datetime_utc '2024-11-25 04:40:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5XSR # _exptl.entry_id 5XSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.353 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-fluoranyl-2-(4,5,6,7-tetrahydrothieno[2,3-c]pyridin-2-yl)-1~{H}-benzimidazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XSR _cell.length_a 94.08 _cell.length_b 94.08 _cell.length_c 225.42 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 189 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 184 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 189 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 184 _struct_conn.ptnr2_symmetry 8_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.069 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H13 F N4 O S' _chem_comp.formula_weight 316.353 _chem_comp.id 8EC _chem_comp.mon_nstd_flag . _chem_comp.name 6-fluoranyl-2-(4,5,6,7-tetrahydrothieno[2,3-c]pyridin-2-yl)-1~{H}-benzimidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N17 C18 8EC sing 1 n n N17 C16 8EC sing 2 n n C18 C19 8EC sing 3 n n C19 S20 8EC sing 4 n y C19 C14 8EC doub 5 n y C16 C15 8EC sing 6 n n S20 C12 8EC sing 7 n y C14 C15 8EC sing 8 n n C14 C13 8EC sing 9 n y C12 C13 8EC doub 10 n y C12 C11 8EC sing 11 n n N10 C11 8EC sing 12 n y N10 C09 8EC sing 13 n y C11 N21 8EC doub 14 n y C08 C09 8EC doub 15 n y C08 C06 8EC sing 16 n y C09 C22 8EC sing 17 n y N21 C22 8EC sing 18 n y C06 F07 8EC sing 19 n n C06 C05 8EC doub 20 n y C22 C04 8EC doub 21 n y C05 C04 8EC sing 22 n y C04 C02 8EC sing 23 n n N01 C02 8EC sing 24 n n C02 O03 8EC doub 25 n n C05 H1 8EC sing 26 n n C08 H2 8EC sing 27 n n C13 H3 8EC sing 28 n n C15 H4 8EC sing 29 n n C15 H5 8EC sing 30 n n C16 H6 8EC sing 31 n n C16 H7 8EC sing 32 n n C18 H8 8EC sing 33 n n C18 H9 8EC sing 34 n n N01 H10 8EC sing 35 n n N01 H11 8EC sing 36 n n N10 H12 8EC sing 37 n n N17 H13 8EC sing 38 n n # _atom_sites.entry_id 5XSR _atom_sites.fract_transf_matrix[1][1] 0.010629 _atom_sites.fract_transf_matrix[1][2] 0.006137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8EC A 1 401 1 8EC 13 . C 3 SO4 A 1 403 2 SO4 SO4 . D 3 SO4 A 1 404 3 SO4 SO4 . E 4 HOH A 1 501 92 HOH HOH . E 4 HOH A 2 502 84 HOH HOH . E 4 HOH A 3 503 155 HOH HOH . E 4 HOH A 4 504 87 HOH HOH . E 4 HOH A 5 505 24 HOH HOH . E 4 HOH A 6 506 49 HOH HOH . E 4 HOH A 7 507 147 HOH HOH . E 4 HOH A 8 508 104 HOH HOH . E 4 HOH A 9 509 5 HOH HOH . E 4 HOH A 10 510 94 HOH HOH . E 4 HOH A 11 511 43 HOH HOH . E 4 HOH A 12 512 22 HOH HOH . E 4 HOH A 13 513 123 HOH HOH . E 4 HOH A 14 514 25 HOH HOH . E 4 HOH A 15 515 13 HOH HOH . E 4 HOH A 16 516 91 HOH HOH . E 4 HOH A 17 517 8 HOH HOH . E 4 HOH A 18 518 58 HOH HOH . E 4 HOH A 19 519 27 HOH HOH . E 4 HOH A 20 520 105 HOH HOH . E 4 HOH A 21 521 100 HOH HOH . E 4 HOH A 22 522 145 HOH HOH . E 4 HOH A 23 523 6 HOH HOH . E 4 HOH A 24 524 45 HOH HOH . E 4 HOH A 25 525 96 HOH HOH . E 4 HOH A 26 526 143 HOH HOH . E 4 HOH A 27 527 23 HOH HOH . E 4 HOH A 28 528 81 HOH HOH . E 4 HOH A 29 529 52 HOH HOH . E 4 HOH A 30 530 97 HOH HOH . E 4 HOH A 31 531 102 HOH HOH . E 4 HOH A 32 532 34 HOH HOH . E 4 HOH A 33 533 95 HOH HOH . E 4 HOH A 34 534 33 HOH HOH . E 4 HOH A 35 535 39 HOH HOH . E 4 HOH A 36 536 11 HOH HOH . E 4 HOH A 37 537 64 HOH HOH . E 4 HOH A 38 538 156 HOH HOH . E 4 HOH A 39 539 121 HOH HOH . E 4 HOH A 40 540 74 HOH HOH . E 4 HOH A 41 541 9 HOH HOH . E 4 HOH A 42 542 12 HOH HOH . E 4 HOH A 43 543 57 HOH HOH . E 4 HOH A 44 544 85 HOH HOH . E 4 HOH A 45 545 29 HOH HOH . E 4 HOH A 46 546 26 HOH HOH . E 4 HOH A 47 547 108 HOH HOH . E 4 HOH A 48 548 99 HOH HOH . E 4 HOH A 49 549 16 HOH HOH . E 4 HOH A 50 550 46 HOH HOH . E 4 HOH A 51 551 36 HOH HOH . E 4 HOH A 52 552 82 HOH HOH . E 4 HOH A 53 553 19 HOH HOH . E 4 HOH A 54 554 7 HOH HOH . E 4 HOH A 55 555 124 HOH HOH . E 4 HOH A 56 556 50 HOH HOH . E 4 HOH A 57 557 93 HOH HOH . E 4 HOH A 58 559 31 HOH HOH . E 4 HOH A 59 560 4 HOH HOH . E 4 HOH A 60 561 67 HOH HOH . E 4 HOH A 61 562 38 HOH HOH . E 4 HOH A 62 563 15 HOH HOH . E 4 HOH A 63 564 10 HOH HOH . E 4 HOH A 64 565 151 HOH HOH . E 4 HOH A 65 566 129 HOH HOH . E 4 HOH A 66 567 106 HOH HOH . E 4 HOH A 67 568 20 HOH HOH . E 4 HOH A 68 569 148 HOH HOH . E 4 HOH A 69 570 21 HOH HOH . E 4 HOH A 70 571 90 HOH HOH . E 4 HOH A 71 572 130 HOH HOH . E 4 HOH A 72 573 28 HOH HOH . E 4 HOH A 73 574 68 HOH HOH . E 4 HOH A 74 575 73 HOH HOH . E 4 HOH A 75 576 3 HOH HOH . E 4 HOH A 76 577 75 HOH HOH . E 4 HOH A 77 578 150 HOH HOH . E 4 HOH A 78 579 17 HOH HOH . E 4 HOH A 79 580 37 HOH HOH . E 4 HOH A 80 581 55 HOH HOH . E 4 HOH A 81 582 113 HOH HOH . E 4 HOH A 82 583 128 HOH HOH . E 4 HOH A 83 584 80 HOH HOH . E 4 HOH A 84 585 32 HOH HOH . E 4 HOH A 85 587 63 HOH HOH . E 4 HOH A 86 588 42 HOH HOH . E 4 HOH A 87 589 111 HOH HOH . E 4 HOH A 88 590 120 HOH HOH . E 4 HOH A 89 591 114 HOH HOH . E 4 HOH A 90 592 30 HOH HOH . E 4 HOH A 91 593 153 HOH HOH . E 4 HOH A 92 594 117 HOH HOH . E 4 HOH A 93 595 59 HOH HOH . E 4 HOH A 94 596 18 HOH HOH . E 4 HOH A 95 597 103 HOH HOH . E 4 HOH A 96 598 61 HOH HOH . E 4 HOH A 97 599 144 HOH HOH . E 4 HOH A 98 600 53 HOH HOH . E 4 HOH A 99 601 107 HOH HOH . E 4 HOH A 100 602 2 HOH HOH . E 4 HOH A 101 603 65 HOH HOH . E 4 HOH A 102 604 1 HOH HOH . E 4 HOH A 103 605 72 HOH HOH . E 4 HOH A 104 606 125 HOH HOH . E 4 HOH A 105 607 77 HOH HOH . E 4 HOH A 106 608 78 HOH HOH . E 4 HOH A 107 609 89 HOH HOH . E 4 HOH A 108 610 35 HOH HOH . E 4 HOH A 109 611 146 HOH HOH . E 4 HOH A 110 612 119 HOH HOH . E 4 HOH A 111 613 51 HOH HOH . E 4 HOH A 112 614 122 HOH HOH . E 4 HOH A 113 615 132 HOH HOH . E 4 HOH A 114 616 70 HOH HOH . E 4 HOH A 115 617 136 HOH HOH . E 4 HOH A 116 618 101 HOH HOH . E 4 HOH A 117 619 116 HOH HOH . E 4 HOH A 118 620 133 HOH HOH . E 4 HOH A 119 621 44 HOH HOH . E 4 HOH A 120 622 62 HOH HOH . E 4 HOH A 121 623 134 HOH HOH . E 4 HOH A 122 624 110 HOH HOH . E 4 HOH A 123 625 142 HOH HOH . E 4 HOH A 124 626 14 HOH HOH . E 4 HOH A 125 627 138 HOH HOH . E 4 HOH A 126 628 137 HOH HOH . E 4 HOH A 127 629 79 HOH HOH . E 4 HOH A 128 630 115 HOH HOH . E 4 HOH A 129 631 88 HOH HOH . E 4 HOH A 130 632 127 HOH HOH . E 4 HOH A 131 633 76 HOH HOH . E 4 HOH A 132 634 83 HOH HOH . E 4 HOH A 133 635 41 HOH HOH . E 4 HOH A 134 636 40 HOH HOH . E 4 HOH A 135 637 98 HOH HOH . E 4 HOH A 136 639 71 HOH HOH . E 4 HOH A 137 640 131 HOH HOH . E 4 HOH A 138 641 54 HOH HOH . E 4 HOH A 139 642 112 HOH HOH . E 4 HOH A 140 643 158 HOH HOH . E 4 HOH A 141 644 126 HOH HOH . E 4 HOH A 142 645 139 HOH HOH . E 4 HOH A 143 646 48 HOH HOH . E 4 HOH A 144 647 56 HOH HOH . E 4 HOH A 145 648 60 HOH HOH . E 4 HOH A 146 649 149 HOH HOH . E 4 HOH A 147 650 140 HOH HOH . E 4 HOH A 148 651 109 HOH HOH . E 4 HOH A 149 652 47 HOH HOH . E 4 HOH A 150 653 157 HOH HOH . E 4 HOH A 151 654 152 HOH HOH . E 4 HOH A 152 655 118 HOH HOH . E 4 HOH A 153 656 69 HOH HOH . E 4 HOH A 154 657 66 HOH HOH . E 4 HOH A 155 658 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 8EC . . . B 2 23.425 -15.244 -19.628 1 29.84 ? C02 8EC 401 A 1 HETATM 2 C C04 8EC . . . B 2 22.644 -14.843 -20.909 1 27.87 ? C04 8EC 401 A 1 HETATM 3 C C05 8EC . . . B 2 21.279 -14.967 -20.931 1 28.62 ? C05 8EC 401 A 1 HETATM 4 C C06 8EC . . . B 2 20.591 -14.659 -22.095 1 28.74 ? C06 8EC 401 A 1 HETATM 5 C C08 8EC . . . B 2 21.283 -14.202 -23.262 1 30.5 ? C08 8EC 401 A 1 HETATM 6 C C09 8EC . . . B 2 22.686 -14.11 -23.234 1 29.86 ? C09 8EC 401 A 1 HETATM 7 C C11 8EC . . . B 2 24.817 -13.776 -23.564 1 26.52 ? C11 8EC 401 A 1 HETATM 8 C C12 8EC . . . B 2 26.141 -13.44 -24.3 1 31.92 ? C12 8EC 401 A 1 HETATM 9 C C13 8EC . . . B 2 27.273 -13.442 -23.76 1 22.34 ? C13 8EC 401 A 1 HETATM 10 C C14 8EC . . . B 2 28.364 -13.126 -24.678 1 33.58 ? C14 8EC 401 A 1 HETATM 11 C C15 8EC . . . B 2 29.825 -12.967 -24.629 1 36.34 ? C15 8EC 401 A 1 HETATM 12 C C16 8EC . . . B 2 30.536 -12.325 -26.005 1 37.17 ? C16 8EC 401 A 1 HETATM 13 C C18 8EC . . . B 2 28.447 -12.56 -27.168 1 38 ? C18 8EC 401 A 1 HETATM 14 C C19 8EC . . . B 2 27.838 -12.886 -26.009 1 36.91 ? C19 8EC 401 A 1 HETATM 15 C C22 8EC . . . B 2 23.34 -14.441 -22.039 1 27.45 ? C22 8EC 401 A 1 HETATM 16 F F07 8EC . . . B 2 19.22 -14.814 -22.01 1 29.31 ? F07 8EC 401 A 1 HETATM 17 N N01 8EC . . . B 2 24.841 -15.084 -19.632 1 25.55 ? N01 8EC 401 A 1 HETATM 18 N N10 8EC . . . B 2 23.652 -13.761 -23.983 1 29.07 ? N10 8EC 401 A 1 HETATM 19 N N17 8EC . . . B 2 29.837 -12.721 -27.324 1 35.82 ? N17 8EC 401 A 1 HETATM 20 N N21 8EC . . . B 2 24.746 -14.212 -22.288 1 29.26 ? N21 8EC 401 A 1 HETATM 21 O O03 8EC . . . B 2 22.838 -15.72 -18.689 1 33.74 ? O03 8EC 401 A 1 HETATM 22 S S20 8EC . . . B 2 25.938 -13.112 -25.894 1 45.85 ? S20 8EC 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #