data_5XST # _model_server_result.job_id 2k5pUXVtDSZT6hFcWRcWMg _model_server_result.datetime_utc '2024-11-27 02:17:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5XST # _exptl.entry_id 5XST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.353 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-fluoranyl-2-(4,5,6,7-tetrahydrothieno[3,2-c]pyridin-2-yl)-1~{H}-benzimidazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5XST _cell.length_a 93.98 _cell.length_b 93.98 _cell.length_c 222.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XST _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 185 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 184 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 185 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 184 _struct_conn.ptnr2_symmetry 8_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.062 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H13 F N4 O S' _chem_comp.formula_weight 316.353 _chem_comp.id 8E6 _chem_comp.mon_nstd_flag . _chem_comp.name 6-fluoranyl-2-(4,5,6,7-tetrahydrothieno[3,2-c]pyridin-2-yl)-1~{H}-benzimidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N19 C20 8E6 sing 1 n n N19 C18 8E6 sing 2 n n C20 C14 8E6 sing 3 n n C18 C17 8E6 sing 4 n n C14 C13 8E6 sing 5 n y C14 C15 8E6 doub 6 n y C13 C12 8E6 doub 7 n y C17 C15 8E6 sing 8 n n C15 S16 8E6 sing 9 n y N10 C11 8E6 sing 10 n y N10 C09 8E6 sing 11 n y C12 C11 8E6 sing 12 n n C12 S16 8E6 sing 13 n y C11 N21 8E6 doub 14 n y C08 C09 8E6 doub 15 n y C08 C06 8E6 sing 16 n y C09 C22 8E6 sing 17 n y F07 C06 8E6 sing 18 n n C06 C05 8E6 doub 19 n y N21 C22 8E6 sing 20 n y C22 C04 8E6 doub 21 n y C05 C04 8E6 sing 22 n y C04 C02 8E6 sing 23 n n C02 N01 8E6 sing 24 n n C02 O03 8E6 doub 25 n n C05 H1 8E6 sing 26 n n C08 H2 8E6 sing 27 n n C13 H3 8E6 sing 28 n n C17 H4 8E6 sing 29 n n C17 H5 8E6 sing 30 n n C18 H6 8E6 sing 31 n n C18 H7 8E6 sing 32 n n C20 H8 8E6 sing 33 n n C20 H9 8E6 sing 34 n n N01 H10 8E6 sing 35 n n N01 H11 8E6 sing 36 n n N10 H12 8E6 sing 37 n n N19 H13 8E6 sing 38 n n # _atom_sites.entry_id 5XST _atom_sites.fract_transf_matrix[1][1] 0.010641 _atom_sites.fract_transf_matrix[1][2] 0.006143 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8E6 A 1 401 1 8E6 15 . C 3 SO4 A 1 402 1 SO4 SO4 . D 4 HOH A 1 501 15 HOH HOH . D 4 HOH A 2 502 3 HOH HOH . D 4 HOH A 3 503 25 HOH HOH . D 4 HOH A 4 504 36 HOH HOH . D 4 HOH A 5 505 32 HOH HOH . D 4 HOH A 6 506 45 HOH HOH . D 4 HOH A 7 507 40 HOH HOH . D 4 HOH A 8 508 19 HOH HOH . D 4 HOH A 9 509 9 HOH HOH . D 4 HOH A 10 510 69 HOH HOH . D 4 HOH A 11 511 22 HOH HOH . D 4 HOH A 12 512 39 HOH HOH . D 4 HOH A 13 513 38 HOH HOH . D 4 HOH A 14 514 11 HOH HOH . D 4 HOH A 15 515 12 HOH HOH . D 4 HOH A 16 516 5 HOH HOH . D 4 HOH A 17 517 20 HOH HOH . D 4 HOH A 18 518 14 HOH HOH . D 4 HOH A 19 519 27 HOH HOH . D 4 HOH A 20 520 1 HOH HOH . D 4 HOH A 21 521 54 HOH HOH . D 4 HOH A 22 522 7 HOH HOH . D 4 HOH A 23 523 66 HOH HOH . D 4 HOH A 24 524 47 HOH HOH . D 4 HOH A 25 525 28 HOH HOH . D 4 HOH A 26 526 16 HOH HOH . D 4 HOH A 27 527 24 HOH HOH . D 4 HOH A 28 528 13 HOH HOH . D 4 HOH A 29 529 53 HOH HOH . D 4 HOH A 30 530 30 HOH HOH . D 4 HOH A 31 531 26 HOH HOH . D 4 HOH A 32 532 2 HOH HOH . D 4 HOH A 33 533 37 HOH HOH . D 4 HOH A 34 534 41 HOH HOH . D 4 HOH A 35 535 74 HOH HOH . D 4 HOH A 36 536 31 HOH HOH . D 4 HOH A 37 537 29 HOH HOH . D 4 HOH A 38 538 43 HOH HOH . D 4 HOH A 39 539 42 HOH HOH . D 4 HOH A 40 540 75 HOH HOH . D 4 HOH A 41 541 77 HOH HOH . D 4 HOH A 42 542 18 HOH HOH . D 4 HOH A 43 543 34 HOH HOH . D 4 HOH A 44 544 68 HOH HOH . D 4 HOH A 45 545 56 HOH HOH . D 4 HOH A 46 546 50 HOH HOH . D 4 HOH A 47 547 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 8E6 . . . B 2 23.179 -15.18 -19.705 1 38.65 ? C02 8E6 401 A 1 HETATM 2 C C04 8E6 . . . B 2 22.48 -14.775 -21.009 1 40.43 ? C04 8E6 401 A 1 HETATM 3 C C05 8E6 . . . B 2 21.124 -14.887 -21.105 1 37.94 ? C05 8E6 401 A 1 HETATM 4 C C06 8E6 . . . B 2 20.466 -14.541 -22.329 1 43.16 ? C06 8E6 401 A 1 HETATM 5 C C08 8E6 . . . B 2 21.201 -14.076 -23.44 1 40.95 ? C08 8E6 401 A 1 HETATM 6 C C09 8E6 . . . B 2 22.612 -13.965 -23.348 1 45.27 ? C09 8E6 401 A 1 HETATM 7 C C11 8E6 . . . B 2 24.779 -13.613 -23.564 1 41.69 ? C11 8E6 401 A 1 HETATM 8 C C12 8E6 . . . B 2 26.062 -13.378 -24.115 1 48.69 ? C12 8E6 401 A 1 HETATM 9 C C13 8E6 . . . B 2 26.384 -13.12 -25.449 1 44.78 ? C13 8E6 401 A 1 HETATM 10 C C14 8E6 . . . B 2 27.767 -13.041 -25.726 1 50.5 ? C14 8E6 401 A 1 HETATM 11 C C15 8E6 . . . B 2 28.578 -13.262 -24.662 1 54.25 ? C15 8E6 401 A 1 HETATM 12 C C17 8E6 . . . B 2 30.075 -13.201 -24.735 1 59.73 ? C17 8E6 401 A 1 HETATM 13 C C18 8E6 . . . B 2 30.563 -12.515 -26.039 1 56.63 ? C18 8E6 401 A 1 HETATM 14 C C20 8E6 . . . B 2 28.359 -12.739 -27.094 1 48.89 ? C20 8E6 401 A 1 HETATM 15 C C22 8E6 . . . B 2 23.249 -14.311 -22.134 1 36.9 ? C22 8E6 401 A 1 HETATM 16 F F07 8E6 . . . B 2 19.078 -14.677 -22.393 1 45.8 ? F07 8E6 401 A 1 HETATM 17 N N01 8E6 . . . B 2 24.633 -15.025 -19.566 1 35.75 ? N01 8E6 401 A 1 HETATM 18 N N10 8E6 . . . B 2 23.577 -13.561 -24.206 1 36.2 ? N10 8E6 401 A 1 HETATM 19 N N19 8E6 . . . B 2 29.807 -12.905 -27.197 1 55.16 ? N19 8E6 401 A 1 HETATM 20 N N21 8E6 . . . B 2 24.579 -14.097 -22.326 1 39.16 ? N21 8E6 401 A 1 HETATM 21 O O03 8E6 . . . B 2 22.548 -15.673 -18.798 1 38.84 ? O03 8E6 401 A 1 HETATM 22 S S16 8E6 . . . B 2 27.554 -13.575 -23.306 1 55.37 ? S16 8E6 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #