data_5XSU # _model_server_result.job_id iX6Wu3Rof450-DRD52IS8w _model_server_result.datetime_utc '2024-11-24 07:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xsu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":407}' # _entry.id 5XSU # _exptl.entry_id 5XSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.288 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-fluoranyl-2-(4,5,6,7-tetrahydrofuro[2,3-c]pyridin-2-yl)-1~{H}-benzimidazole-4-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XSU _cell.length_a 103.67 _cell.length_b 107.27 _cell.length_c 142.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,Y 1 1 B,L,M,N,O,P,Q,R,Z 2 1 C,S,T,U,AA 3 1 D,V,W,X,BA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 R N N ? 3 U N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 184 1_555 D SG CYS 189 D CYS 184 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 189 B CYS 184 1_555 C SG CYS 189 C CYS 184 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 B NZ LYS 193 B LYS 188 1_555 O O3 SO4 . B SO4 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C15 H13 F N4 O2' _chem_comp.formula_weight 300.288 _chem_comp.id 8E3 _chem_comp.mon_nstd_flag . _chem_comp.name 6-fluoranyl-2-(4,5,6,7-tetrahydrofuro[2,3-c]pyridin-2-yl)-1~{H}-benzimidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 8E3 sing 1 n n C19 N18 8E3 sing 2 n n C20 C14 8E3 sing 3 n n N18 C17 8E3 sing 4 n n C14 C13 8E3 sing 5 n y C14 C15 8E3 doub 6 n y C13 C12 8E3 doub 7 n y C17 C15 8E3 sing 8 n n C15 O16 8E3 sing 9 n y N01 C02 8E3 sing 10 n n C12 O16 8E3 sing 11 n y C12 C11 8E3 sing 12 n n N21 C11 8E3 doub 13 n y N21 C22 8E3 sing 14 n y C11 N10 8E3 sing 15 n y C02 O03 8E3 doub 16 n n C02 C04 8E3 sing 17 n n C22 C04 8E3 doub 18 n y C22 C09 8E3 sing 19 n y C04 C05 8E3 sing 20 n y N10 C09 8E3 sing 21 n y C09 C08 8E3 doub 22 n y C05 C06 8E3 doub 23 n y C08 C06 8E3 sing 24 n y C06 F07 8E3 sing 25 n n C05 H1 8E3 sing 26 n n C08 H2 8E3 sing 27 n n C13 H3 8E3 sing 28 n n C17 H4 8E3 sing 29 n n C17 H5 8E3 sing 30 n n C19 H6 8E3 sing 31 n n C19 H7 8E3 sing 32 n n C20 H8 8E3 sing 33 n n C20 H9 8E3 sing 34 n n N01 H10 8E3 sing 35 n n N01 H11 8E3 sing 36 n n N10 H12 8E3 sing 37 n n N18 H13 8E3 sing 38 n n # _atom_sites.entry_id 5XSU _atom_sites.fract_transf_matrix[1][1] 0.009646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007016 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 401 1 SO4 SO4 . F 2 SO4 A 1 402 2 SO4 SO4 . G 2 SO4 A 1 403 3 SO4 SO4 . H 2 SO4 A 1 404 4 SO4 SO4 . I 2 SO4 A 1 405 5 SO4 SO4 . J 2 SO4 A 1 406 13 SO4 SO4 . K 3 8E3 A 1 407 1 8E3 31 . L 2 SO4 B 1 401 6 SO4 SO4 . M 2 SO4 B 1 402 7 SO4 SO4 . N 2 SO4 B 1 403 8 SO4 SO4 . O 2 SO4 B 1 404 14 SO4 SO4 . P 2 SO4 B 1 405 15 SO4 SO4 . Q 2 SO4 B 1 406 16 SO4 SO4 . R 3 8E3 B 1 407 2 8E3 31 . S 2 SO4 C 1 401 9 SO4 SO4 . T 2 SO4 C 1 402 10 SO4 SO4 . U 3 8E3 C 1 403 3 8E3 31 . V 2 SO4 D 1 401 11 SO4 SO4 . W 2 SO4 D 1 402 12 SO4 SO4 . X 3 8E3 D 1 403 4 8E3 31 . Y 4 HOH A 1 501 128 HOH HOH . Y 4 HOH A 2 502 57 HOH HOH . Y 4 HOH A 3 503 133 HOH HOH . Y 4 HOH A 4 504 101 HOH HOH . Y 4 HOH A 5 505 98 HOH HOH . Y 4 HOH A 6 506 95 HOH HOH . Y 4 HOH A 7 507 146 HOH HOH . Y 4 HOH A 8 508 4 HOH HOH . Y 4 HOH A 9 509 54 HOH HOH . Y 4 HOH A 10 510 110 HOH HOH . Y 4 HOH A 11 511 2 HOH HOH . Y 4 HOH A 12 512 7 HOH HOH . Y 4 HOH A 13 513 6 HOH HOH . Y 4 HOH A 14 514 109 HOH HOH . Y 4 HOH A 15 515 105 HOH HOH . Y 4 HOH A 16 516 100 HOH HOH . Y 4 HOH A 17 517 50 HOH HOH . Y 4 HOH A 18 518 15 HOH HOH . Y 4 HOH A 19 519 66 HOH HOH . Y 4 HOH A 20 520 172 HOH HOH . Y 4 HOH A 21 521 32 HOH HOH . Y 4 HOH A 22 522 145 HOH HOH . Y 4 HOH A 23 523 33 HOH HOH . Y 4 HOH A 24 524 158 HOH HOH . Y 4 HOH A 25 525 147 HOH HOH . Y 4 HOH A 26 526 123 HOH HOH . Y 4 HOH A 27 527 134 HOH HOH . Y 4 HOH A 28 528 56 HOH HOH . Y 4 HOH A 29 529 118 HOH HOH . Y 4 HOH A 30 530 92 HOH HOH . Y 4 HOH A 31 531 81 HOH HOH . Y 4 HOH A 32 532 154 HOH HOH . Y 4 HOH A 33 533 137 HOH HOH . Y 4 HOH A 34 534 116 HOH HOH . Y 4 HOH A 35 535 67 HOH HOH . Y 4 HOH A 36 536 5 HOH HOH . Y 4 HOH A 37 537 42 HOH HOH . Y 4 HOH A 38 538 97 HOH HOH . Y 4 HOH A 39 539 88 HOH HOH . Y 4 HOH A 40 540 119 HOH HOH . Z 4 HOH B 1 501 64 HOH HOH . Z 4 HOH B 2 502 168 HOH HOH . Z 4 HOH B 3 503 17 HOH HOH . Z 4 HOH B 4 504 94 HOH HOH . Z 4 HOH B 5 505 62 HOH HOH . Z 4 HOH B 6 506 84 HOH HOH . Z 4 HOH B 7 507 139 HOH HOH . Z 4 HOH B 8 508 49 HOH HOH . Z 4 HOH B 9 509 68 HOH HOH . Z 4 HOH B 10 510 122 HOH HOH . Z 4 HOH B 11 511 76 HOH HOH . Z 4 HOH B 12 512 30 HOH HOH . Z 4 HOH B 13 513 53 HOH HOH . Z 4 HOH B 14 514 183 HOH HOH . Z 4 HOH B 15 515 72 HOH HOH . Z 4 HOH B 16 516 63 HOH HOH . Z 4 HOH B 17 517 52 HOH HOH . Z 4 HOH B 18 518 73 HOH HOH . Z 4 HOH B 19 519 43 HOH HOH . Z 4 HOH B 20 520 120 HOH HOH . Z 4 HOH B 21 521 31 HOH HOH . Z 4 HOH B 22 522 25 HOH HOH . Z 4 HOH B 23 523 3 HOH HOH . Z 4 HOH B 24 524 51 HOH HOH . Z 4 HOH B 25 525 102 HOH HOH . Z 4 HOH B 26 526 114 HOH HOH . Z 4 HOH B 27 527 75 HOH HOH . Z 4 HOH B 28 528 129 HOH HOH . Z 4 HOH B 29 529 59 HOH HOH . Z 4 HOH B 30 530 48 HOH HOH . Z 4 HOH B 31 531 141 HOH HOH . Z 4 HOH B 32 532 21 HOH HOH . Z 4 HOH B 33 533 10 HOH HOH . Z 4 HOH B 34 534 117 HOH HOH . Z 4 HOH B 35 535 70 HOH HOH . Z 4 HOH B 36 536 38 HOH HOH . Z 4 HOH B 37 537 1 HOH HOH . Z 4 HOH B 38 538 58 HOH HOH . Z 4 HOH B 39 539 111 HOH HOH . Z 4 HOH B 40 540 89 HOH HOH . Z 4 HOH B 41 541 35 HOH HOH . Z 4 HOH B 42 542 44 HOH HOH . Z 4 HOH B 43 543 26 HOH HOH . Z 4 HOH B 44 544 182 HOH HOH . Z 4 HOH B 45 545 180 HOH HOH . Z 4 HOH B 46 546 9 HOH HOH . Z 4 HOH B 47 547 19 HOH HOH . Z 4 HOH B 48 548 28 HOH HOH . Z 4 HOH B 49 549 181 HOH HOH . Z 4 HOH B 50 550 78 HOH HOH . Z 4 HOH B 51 551 149 HOH HOH . Z 4 HOH B 52 552 177 HOH HOH . Z 4 HOH B 53 553 91 HOH HOH . Z 4 HOH B 54 554 136 HOH HOH . Z 4 HOH B 55 555 171 HOH HOH . Z 4 HOH B 56 556 45 HOH HOH . Z 4 HOH B 57 557 131 HOH HOH . Z 4 HOH B 58 558 8 HOH HOH . Z 4 HOH B 59 559 174 HOH HOH . Z 4 HOH B 60 560 104 HOH HOH . Z 4 HOH B 61 561 150 HOH HOH . Z 4 HOH B 62 562 159 HOH HOH . Z 4 HOH B 63 563 163 HOH HOH . Z 4 HOH B 64 564 160 HOH HOH . Z 4 HOH B 65 565 175 HOH HOH . Z 4 HOH B 66 566 151 HOH HOH . Z 4 HOH B 67 567 152 HOH HOH . Z 4 HOH B 68 568 115 HOH HOH . AA 4 HOH C 1 501 80 HOH HOH . AA 4 HOH C 2 502 164 HOH HOH . AA 4 HOH C 3 503 65 HOH HOH . AA 4 HOH C 4 504 144 HOH HOH . AA 4 HOH C 5 505 176 HOH HOH . AA 4 HOH C 6 506 108 HOH HOH . AA 4 HOH C 7 507 11 HOH HOH . AA 4 HOH C 8 508 13 HOH HOH . AA 4 HOH C 9 509 61 HOH HOH . AA 4 HOH C 10 510 47 HOH HOH . AA 4 HOH C 11 511 93 HOH HOH . AA 4 HOH C 12 512 165 HOH HOH . AA 4 HOH C 13 513 34 HOH HOH . AA 4 HOH C 14 514 29 HOH HOH . AA 4 HOH C 15 515 60 HOH HOH . AA 4 HOH C 16 516 77 HOH HOH . AA 4 HOH C 17 517 40 HOH HOH . AA 4 HOH C 18 518 41 HOH HOH . AA 4 HOH C 19 519 96 HOH HOH . AA 4 HOH C 20 520 142 HOH HOH . AA 4 HOH C 21 521 12 HOH HOH . AA 4 HOH C 22 522 22 HOH HOH . AA 4 HOH C 23 523 69 HOH HOH . AA 4 HOH C 24 524 24 HOH HOH . AA 4 HOH C 25 525 14 HOH HOH . AA 4 HOH C 26 526 124 HOH HOH . AA 4 HOH C 27 527 112 HOH HOH . AA 4 HOH C 28 528 99 HOH HOH . AA 4 HOH C 29 529 18 HOH HOH . AA 4 HOH C 30 530 143 HOH HOH . AA 4 HOH C 31 531 127 HOH HOH . AA 4 HOH C 32 532 140 HOH HOH . AA 4 HOH C 33 533 107 HOH HOH . AA 4 HOH C 34 534 86 HOH HOH . AA 4 HOH C 35 535 83 HOH HOH . AA 4 HOH C 36 536 121 HOH HOH . AA 4 HOH C 37 537 55 HOH HOH . AA 4 HOH C 38 538 156 HOH HOH . AA 4 HOH C 39 539 167 HOH HOH . AA 4 HOH C 40 540 162 HOH HOH . BA 4 HOH D 1 501 113 HOH HOH . BA 4 HOH D 2 502 39 HOH HOH . BA 4 HOH D 3 503 20 HOH HOH . BA 4 HOH D 4 504 16 HOH HOH . BA 4 HOH D 5 505 138 HOH HOH . BA 4 HOH D 6 506 27 HOH HOH . BA 4 HOH D 7 507 46 HOH HOH . BA 4 HOH D 8 508 71 HOH HOH . BA 4 HOH D 9 509 37 HOH HOH . BA 4 HOH D 10 510 170 HOH HOH . BA 4 HOH D 11 511 23 HOH HOH . BA 4 HOH D 12 512 82 HOH HOH . BA 4 HOH D 13 513 85 HOH HOH . BA 4 HOH D 14 514 155 HOH HOH . BA 4 HOH D 15 515 184 HOH HOH . BA 4 HOH D 16 516 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 8E3 . . . R 3 -41.666 -7.414 -60.55 1 24.6 ? C02 8E3 407 B 1 HETATM 2 C C04 8E3 . . . R 3 -40.793 -8.517 -61.203 1 25.3 ? C04 8E3 407 B 1 HETATM 3 C C05 8E3 . . . R 3 -41.025 -9.856 -60.947 1 26.27 ? C05 8E3 407 B 1 HETATM 4 C C06 8E3 . . . R 3 -40.213 -10.838 -61.532 1 24.22 ? C06 8E3 407 B 1 HETATM 5 C C08 8E3 . . . R 3 -39.156 -10.486 -62.366 1 25.96 ? C08 8E3 407 B 1 HETATM 6 C C09 8E3 . . . R 3 -38.914 -9.124 -62.636 1 25.98 ? C09 8E3 407 B 1 HETATM 7 C C11 8E3 . . . R 3 -38.256 -7.185 -63.318 1 30.02 ? C11 8E3 407 B 1 HETATM 8 C C12 8E3 . . . R 3 -37.562 -6.122 -63.856 1 36.26 ? C12 8E3 407 B 1 HETATM 9 C C13 8E3 . . . R 3 -37.921 -4.847 -63.495 1 38.44 ? C13 8E3 407 B 1 HETATM 10 C C14 8E3 . . . R 3 -37.028 -3.957 -64.133 1 44.04 ? C14 8E3 407 B 1 HETATM 11 C C15 8E3 . . . R 3 -36.146 -4.729 -64.828 1 49.42 ? C15 8E3 407 B 1 HETATM 12 C C17 8E3 . . . R 3 -35.048 -4.048 -65.617 1 50.79 ? C17 8E3 407 B 1 HETATM 13 C C19 8E3 . . . R 3 -35.776 -1.806 -64.816 1 51.78 ? C19 8E3 407 B 1 HETATM 14 C C20 8E3 . . . R 3 -37.012 -2.413 -64.088 1 43.26 ? C20 8E3 407 B 1 HETATM 15 C C22 8E3 . . . R 3 -39.722 -8.161 -62.067 1 29.05 ? C22 8E3 407 B 1 HETATM 16 F F07 8E3 . . . R 3 -40.459 -12.151 -61.266 1 25.02 ? F07 8E3 407 B 1 HETATM 17 N N01 8E3 . . . R 3 -41.418 -6.028 -60.902 1 20.88 ? N01 8E3 407 B 1 HETATM 18 N N10 8E3 . . . R 3 -37.998 -8.483 -63.404 1 26.29 ? N10 8E3 407 B 1 HETATM 19 N N18 8E3 . . . R 3 -34.671 -2.765 -65.033 1 58.64 ? N18 8E3 407 B 1 HETATM 20 N N21 8E3 . . . R 3 -39.277 -6.957 -62.505 1 29.13 ? N21 8E3 407 B 1 HETATM 21 O O03 8E3 . . . R 3 -42.509 -7.68 -59.749 1 21.72 ? O03 8E3 407 B 1 HETATM 22 O O16 8E3 . . . R 3 -36.463 -6.083 -64.643 1 46.21 ? O16 8E3 407 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #