data_5XSV
#
_model_server_result.job_id            UW2YxkItzdnBb9ztKVY8iA 
_model_server_result.datetime_utc      '2024-11-05 00:57:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xsv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1003}' 
#
_entry.id    5XSV 
#
_exptl.entry_id    5XSV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.933 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COBALT (II) ION' 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.43 
_cell.angle_gamma         90 
_cell.entry_id            5XSV 
_cell.length_a            126.925 
_cell.length_b            104.73 
_cell.length_c            156.463 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XSV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,R,S,T,U 1 1 
B,D,L,M,N,O,P,Q,V,W,X,Y,Z 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 R N N 
? 2 S N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 77 A HIS 396 1_555 F CO CO . A CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc2 A OG SER 350 A SER 669 1_555 G CO CO . A CO 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc3 A OD1 ASP 351 A ASP 670 1_555 G CO CO . A CO 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc4 A OD2 ASP 445 A ASP 764 1_555 H CO CO . A CO 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc5 A NE2 HIS 446 A HIS 765 1_555 H CO CO . A CO 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc6 A OE2 GLU 466 A GLU 785 1_555 E CO CO . A CO 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc7 A NE2 HIS 468 A HIS 787 1_555 E CO CO . A CO 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc8 A OD1 ASP 475 A ASP 794 1_555 F CO CO . A CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc9 A OD2 ASP 475 A ASP 794 1_555 F CO CO . A CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc10 A NE2 HIS 480 A HIS 799 1_555 K CO CO . A CO 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? 
metalc ? metalc11 F CO CO . A CO 1002 1_555 C NE2 HIS 480 C HIS 799 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc12 K CO CO . A CO 1007 1_555 C NE2 HIS 77 C HIS 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc13 K CO CO . A CO 1007 1_555 C OD1 ASP 475 C ASP 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? 
metalc ? metalc14 K CO CO . A CO 1007 1_555 C OD2 ASP 475 C ASP 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc15 B NE2 HIS 77 B HIS 396 1_555 M CO CO . B CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? 
metalc ? metalc16 B NE2 HIS 446 B HIS 765 1_555 O CO CO . B CO 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc17 B NE2 HIS 468 B HIS 787 1_555 L CO CO . B CO 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc18 B OD1 ASP 475 B ASP 794 1_555 M CO CO . B CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc19 B OD2 ASP 475 B ASP 794 1_555 M CO CO . B CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc20 B NE2 HIS 480 B HIS 799 1_555 W CO CO . D CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
metalc ? metalc21 M CO CO . B CO 1002 1_555 D NE2 HIS 480 D HIS 799 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc22 C OD1 ASP 351 C ASP 670 1_555 S CO CO . C CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc23 C NE2 HIS 468 C HIS 787 1_555 R CO CO . C CO 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc24 D NE2 HIS 77 D HIS 396 1_555 W CO CO . D CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc25 D OG SER 350 D SER 669 1_555 X CO CO . D CO 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc26 D OD1 ASP 351 D ASP 670 1_555 X CO CO . D CO 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc27 D OE2 GLU 466 D GLU 785 1_555 V CO CO . D CO 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc28 D NE2 HIS 468 D HIS 787 1_555 V CO CO . D CO 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc29 D OD1 ASP 475 D ASP 794 1_555 W CO CO . D CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc30 D OD2 ASP 475 D ASP 794 1_555 W CO CO . D CO 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
#
_chem_comp.formula           'Co 2' 
_chem_comp.formula_weight    58.933 
_chem_comp.id                CO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COBALT (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XSV 
_atom_sites.fract_transf_matrix[1][1]    0.007879 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003414 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009548 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006966 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CO A 1 1001 1001 CO CO . 
F 2 CO A 1 1002 1002 CO CO . 
G 2 CO A 1 1003 1003 CO CO . 
H 2 CO A 1 1004 1004 CO CO . 
I 3 SO4 A 1 1005 2001 SO4 SO4 . 
J 3 SO4 A 1 1006 2002 SO4 SO4 . 
K 2 CO A 1 1007 1002 CO CO . 
L 2 CO B 1 1001 1001 CO CO . 
M 2 CO B 1 1002 1002 CO CO . 
N 2 CO B 1 1003 1003 CO CO . 
O 2 CO B 1 1004 1004 CO CO . 
P 3 SO4 B 1 1005 2001 SO4 SO4 . 
Q 3 SO4 B 1 1006 2002 SO4 SO4 . 
R 2 CO C 1 1001 1001 CO CO . 
S 2 CO C 1 1002 1003 CO CO . 
T 3 SO4 C 1 1003 2001 SO4 SO4 . 
U 3 SO4 C 1 1004 2002 SO4 SO4 . 
V 2 CO D 1 1001 1001 CO CO . 
W 2 CO D 1 1002 1002 CO CO . 
X 2 CO D 1 1003 1003 CO CO . 
Y 3 SO4 D 1 1004 2001 SO4 SO4 . 
Z 3 SO4 D 1 1005 2002 SO4 SO4 . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CO 
_atom_site.label_atom_id         CO 
_atom_site.label_comp_id         CO 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         X 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -45.624 
_atom_site.Cartn_y               46.463 
_atom_site.Cartn_z               -13.747 
_atom_site.occupancy             0.89 
_atom_site.B_iso_or_equiv        128.81 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CO 
_atom_site.auth_comp_id          CO 
_atom_site.auth_seq_id           1003 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#