data_5XSX
#
_model_server_result.job_id            MIGaUZPCboBLKdhRX3yKCg 
_model_server_result.datetime_utc      '2024-11-08 10:06:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xsx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1006}' 
#
_entry.id    5XSX 
#
_exptl.entry_id    5XSX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XSX 
_cell.length_a            75.932 
_cell.length_b            145.196 
_cell.length_c            152.733 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XSX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,S 1 1 
B,D,L,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 NAG NAG C1 O1 . O4 HO4 . sing 
4 ? 2 5 4 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C NAG 1 C 1 NAG A 1002 CBS 
2 n C NAG 2 C 2 NAG A 1002 CBS 
2 n C NAG 3 C 3 NAG A 1001 CTO 
2 n C NAG 4 C 4 NAG A 1001 CTO 
2 n C NAG 5 C 5 NAG A 1001 CTO 
2 n D NAG 1 D 1 NAG B 1002 CBS 
2 n D NAG 2 D 2 NAG B 1002 CBS 
2 n D NAG 3 D 3 NAG B 1001 CTO 
2 n D NAG 4 D 4 NAG B 1001 CTO 
2 n D NAG 5 D 5 NAG B 1001 CTO 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 sing 
covale ? covale2 C O4 NAG . C NAG 2 1_555 C C1 NAG . C NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 sing 
covale ? covale3 C O4 NAG . C NAG 3 1_555 C C1 NAG . C NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 sing 
covale ? covale4 C O4 NAG . C NAG 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 sing 
covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 sing 
covale ? covale6 D O4 NAG . D NAG 2 1_555 D C1 NAG . D NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 sing 
covale ? covale7 D O4 NAG . D NAG 3 1_555 D C1 NAG . D NAG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 sing 
covale ? covale8 D O4 NAG . D NAG 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 sing 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 303 n n 
P O2 PO4 sing 304 n n 
P O3 PO4 sing 305 n n 
P O4 PO4 sing 306 n n 
#
_atom_sites.entry_id                     5XSX 
_atom_sites.fract_transf_matrix[1][1]    0.01317 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 1003 1101 GOL GOL . 
F 3 GOL A 1 1004 1102 GOL GOL . 
G 3 GOL A 1 1005 1103 GOL GOL . 
H 3 GOL A 1 1006 1104 GOL GOL . 
I 4 PO4 A 1 1007 1201 PO4 PO4 . 
J 4 PO4 A 1 1008 1202 PO4 PO4 . 
K 4 PO4 A 1 1009 1203 PO4 PO4 . 
L 3 GOL B 1 1003 1101 GOL GOL . 
M 3 GOL B 1 1004 1102 GOL GOL . 
N 3 GOL B 1 1005 1103 GOL GOL . 
O 4 PO4 B 1 1006 1201 PO4 PO4 . 
P 4 PO4 B 1 1007 1202 PO4 PO4 . 
Q 4 PO4 B 1 1008 1203 PO4 PO4 . 
R 4 PO4 B 1 1009 1204 PO4 PO4 . 
S 5 HOH A 1 1101 19 HOH HOH . 
S 5 HOH A 2 1102 66 HOH HOH . 
S 5 HOH A 3 1103 47 HOH HOH . 
S 5 HOH A 4 1104 68 HOH HOH . 
S 5 HOH A 5 1105 58 HOH HOH . 
S 5 HOH A 6 1106 11 HOH HOH . 
S 5 HOH A 7 1107 38 HOH HOH . 
S 5 HOH A 8 1108 39 HOH HOH . 
S 5 HOH A 9 1109 77 HOH HOH . 
S 5 HOH A 10 1110 7 HOH HOH . 
S 5 HOH A 11 1111 35 HOH HOH . 
S 5 HOH A 12 1112 41 HOH HOH . 
S 5 HOH A 13 1113 20 HOH HOH . 
S 5 HOH A 14 1114 31 HOH HOH . 
S 5 HOH A 15 1115 17 HOH HOH . 
S 5 HOH A 16 1116 72 HOH HOH . 
S 5 HOH A 17 1117 14 HOH HOH . 
S 5 HOH A 18 1118 40 HOH HOH . 
S 5 HOH A 19 1119 36 HOH HOH . 
S 5 HOH A 20 1120 6 HOH HOH . 
S 5 HOH A 21 1121 24 HOH HOH . 
S 5 HOH A 22 1122 29 HOH HOH . 
S 5 HOH A 23 1123 8 HOH HOH . 
S 5 HOH A 24 1124 49 HOH HOH . 
S 5 HOH A 25 1125 46 HOH HOH . 
S 5 HOH A 26 1126 16 HOH HOH . 
S 5 HOH A 27 1127 18 HOH HOH . 
S 5 HOH A 28 1128 69 HOH HOH . 
S 5 HOH A 29 1129 34 HOH HOH . 
S 5 HOH A 30 1130 22 HOH HOH . 
S 5 HOH A 31 1131 26 HOH HOH . 
S 5 HOH A 32 1132 64 HOH HOH . 
S 5 HOH A 33 1133 59 HOH HOH . 
S 5 HOH A 34 1134 37 HOH HOH . 
S 5 HOH A 35 1135 70 HOH HOH . 
S 5 HOH A 36 1136 67 HOH HOH . 
S 5 HOH A 37 1137 32 HOH HOH . 
S 5 HOH A 38 1138 71 HOH HOH . 
T 5 HOH B 1 1101 23 HOH HOH . 
T 5 HOH B 2 1102 33 HOH HOH . 
T 5 HOH B 3 1103 54 HOH HOH . 
T 5 HOH B 4 1104 5 HOH HOH . 
T 5 HOH B 5 1105 75 HOH HOH . 
T 5 HOH B 6 1106 76 HOH HOH . 
T 5 HOH B 7 1107 53 HOH HOH . 
T 5 HOH B 8 1108 73 HOH HOH . 
T 5 HOH B 9 1109 80 HOH HOH . 
T 5 HOH B 10 1110 2 HOH HOH . 
T 5 HOH B 11 1111 1 HOH HOH . 
T 5 HOH B 12 1112 62 HOH HOH . 
T 5 HOH B 13 1113 21 HOH HOH . 
T 5 HOH B 14 1114 27 HOH HOH . 
T 5 HOH B 15 1115 48 HOH HOH . 
T 5 HOH B 16 1116 28 HOH HOH . 
T 5 HOH B 17 1117 10 HOH HOH . 
T 5 HOH B 18 1118 44 HOH HOH . 
T 5 HOH B 19 1119 63 HOH HOH . 
T 5 HOH B 20 1120 42 HOH HOH . 
T 5 HOH B 21 1121 43 HOH HOH . 
T 5 HOH B 22 1122 12 HOH HOH . 
T 5 HOH B 23 1123 74 HOH HOH . 
T 5 HOH B 24 1124 15 HOH HOH . 
T 5 HOH B 25 1125 3 HOH HOH . 
T 5 HOH B 26 1126 56 HOH HOH . 
T 5 HOH B 27 1127 9 HOH HOH . 
T 5 HOH B 28 1128 25 HOH HOH . 
T 5 HOH B 29 1129 61 HOH HOH . 
T 5 HOH B 30 1130 52 HOH HOH . 
T 5 HOH B 31 1131 55 HOH HOH . 
T 5 HOH B 32 1132 50 HOH HOH . 
T 5 HOH B 33 1133 60 HOH HOH . 
T 5 HOH B 34 1134 81 HOH HOH . 
T 5 HOH B 35 1135 79 HOH HOH . 
T 5 HOH B 36 1136 57 HOH HOH . 
T 5 HOH B 37 1137 13 HOH HOH . 
T 5 HOH B 38 1138 65 HOH HOH . 
T 5 HOH B 39 1139 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . O 4 -32.007 39.859 36.295 0.87 112.18 ? P PO4 1006 B 1 
HETATM 2 O O1 PO4 . . . O 4 -33.063 39.939 35.22 0.87 91.27 ? O1 PO4 1006 B 1 
HETATM 3 O O2 PO4 . . . O 4 -30.653 40.163 35.697 0.87 85.27 ? O2 PO4 1006 B 1 
HETATM 4 O O3 PO4 . . . O 4 -31.998 38.467 36.879 0.87 94.57 ? O3 PO4 1006 B 1 
HETATM 5 O O4 PO4 . . . O 4 -32.316 40.863 37.381 0.87 83.91 ? O4 PO4 1006 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#