data_5XTB # _model_server_result.job_id BDBe9sVGi7Q8nr_PAwpt0g _model_server_result.datetime_utc '2024-11-26 22:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":502}' # _entry.id 5XTB # _exptl.entry_id 5XTB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.344 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 20 _struct_asym.id T _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 GLN 355 A GLN 381 1_555 S FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 B N CYS 80 B CYS 114 1_555 U FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 B N GLY 120 B GLY 154 1_555 V FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc4 C SG CYS 32 C CYS 89 1_555 W FE2 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc5 L NE2 HIS 95 M HIS 124 1_555 Z FE3 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc6 L SG CYS 108 M CYS 137 1_555 Z FE4 SF4 . M SF4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc7 L SG CYS 147 M CYS 176 1_555 AA FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? covale ? covale1 L SG CYS 147 M CYS 176 1_555 AA S3 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc8 L O CYS 150 M CYS 179 1_555 AA FE1 SF4 . M SF4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc9 N SG CYS 141 O CYS 176 1_555 CA FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc10 N SG CYS 145 O CYS 180 1_555 CA FE2 FES . O FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # _atom_sites.entry_id 5XTB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 SF4 A 1 501 501 SF4 SF4 . T 20 FMN A 1 502 502 FMN FMN . U 19 SF4 B 1 301 301 SF4 SF4 . V 19 SF4 B 1 302 302 SF4 SF4 . W 19 SF4 C 1 301 301 SF4 SF4 . X 21 8Q1 E 1 201 201 8Q1 8Q1 . Y 22 NDP J 1 401 401 NDP NDP . Z 19 SF4 M 1 801 801 SF4 SF4 . AA 19 SF4 M 1 802 802 SF4 SF4 . BA 23 FES M 1 803 803 FES FES . CA 23 FES O 1 301 301 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . T 20 207.587 140.418 360.626 1 53.86 ? N1 FMN 502 A 1 HETATM 2 C C2 FMN . . . T 20 207.342 140.646 359.317 1 50.53 ? C2 FMN 502 A 1 HETATM 3 O O2 FMN . . . T 20 208.248 141.151 358.634 1 39.87 ? O2 FMN 502 A 1 HETATM 4 N N3 FMN . . . T 20 206.179 140.356 358.721 1 47.75 ? N3 FMN 502 A 1 HETATM 5 C C4 FMN . . . T 20 205.173 139.809 359.392 1 39.8 ? C4 FMN 502 A 1 HETATM 6 O O4 FMN . . . T 20 204.109 139.545 358.808 1 37.12 ? O4 FMN 502 A 1 HETATM 7 C C4A FMN . . . T 20 205.352 139.525 360.835 1 30.06 ? C4A FMN 502 A 1 HETATM 8 N N5 FMN . . . T 20 204.381 138.975 361.584 1 12.59 ? N5 FMN 502 A 1 HETATM 9 C C5A FMN . . . T 20 204.584 138.734 362.893 1 33.02 ? C5A FMN 502 A 1 HETATM 10 C C6 FMN . . . T 20 203.573 138.169 363.649 1 40.71 ? C6 FMN 502 A 1 HETATM 11 C C7 FMN . . . T 20 203.781 137.918 364.994 1 55.27 ? C7 FMN 502 A 1 HETATM 12 C C7M FMN . . . T 20 202.679 137.304 365.81 1 61.58 ? C7M FMN 502 A 1 HETATM 13 C C8 FMN . . . T 20 205.077 138.258 365.625 1 63.17 ? C8 FMN 502 A 1 HETATM 14 C C8M FMN . . . T 20 205.314 137.99 367.082 1 71.41 ? C8M FMN 502 A 1 HETATM 15 C C9 FMN . . . T 20 206.086 138.822 364.874 1 55.82 ? C9 FMN 502 A 1 HETATM 16 C C9A FMN . . . T 20 205.877 139.069 363.534 1 45.2 ? C9A FMN 502 A 1 HETATM 17 N N10 FMN . . . T 20 206.898 139.639 362.778 1 40.75 ? N10 FMN 502 A 1 HETATM 18 C C10 FMN . . . T 20 206.657 139.873 361.422 1 45.69 ? C10 FMN 502 A 1 HETATM 19 C C1' FMN . . . T 20 208.178 139.963 363.4 1 21.62 ? C1' FMN 502 A 1 HETATM 20 C C2' FMN . . . T 20 208.259 141.456 363.654 1 13.62 ? C2' FMN 502 A 1 HETATM 21 O O2' FMN . . . T 20 208.797 142.074 362.482 1 7.11 ? O2' FMN 502 A 1 HETATM 22 C C3' FMN . . . T 20 209.12 141.756 364.875 1 24.7 ? C3' FMN 502 A 1 HETATM 23 O O3' FMN . . . T 20 210.507 141.84 364.545 1 31.01 ? O3' FMN 502 A 1 HETATM 24 C C4' FMN . . . T 20 208.968 140.643 365.89 1 20.68 ? C4' FMN 502 A 1 HETATM 25 O O4' FMN . . . T 20 207.596 140.573 366.278 1 10.67 ? O4' FMN 502 A 1 HETATM 26 C C5' FMN . . . T 20 209.846 140.899 367.104 1 35.3 ? C5' FMN 502 A 1 HETATM 27 O O5' FMN . . . T 20 210.456 139.672 367.494 1 55.76 ? O5' FMN 502 A 1 HETATM 28 P P FMN . . . T 20 211.082 139.502 368.961 1 33.3 ? P FMN 502 A 1 HETATM 29 O O1P FMN . . . T 20 211.42 138.04 369.012 1 46.6 ? O1P FMN 502 A 1 HETATM 30 O O2P FMN . . . T 20 209.959 139.91 369.876 1 26.8 ? O2P FMN 502 A 1 HETATM 31 O O3P FMN . . . T 20 212.271 140.425 368.996 1 26.8 ? O3P FMN 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #