data_5XTC # _model_server_result.job_id Tc_k0QvnqjYQF3MskD4pzg _model_server_result.datetime_utc '2024-11-26 23:19:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5xtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MA","auth_seq_id":401}' # _entry.id 5XTC # _exptl.entry_id 5XTC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1464.043 _entity.id 31 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CARDIOLIPIN _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5XTC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 29-meric _pdbx_struct_assembly.oligomeric_count 29 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 31 EA N N ? 31 MA N N ? 31 PA N N ? 31 QA N N ? 31 RA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 K SG CYS 111 c CYS 144 1_555 T SG CYS 279 l CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 L SG CYS 149 d CYS 149 1_555 M SG CYS 88 e CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 AA SG CYS 75 u CYS 78 1_555 AA SG CYS 107 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf7 BA SG CYS 67 v CYS 69 1_555 BA SG CYS 78 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? # _chem_comp.formula 'C81 H156 O17 P2 -2' _chem_comp.formula_weight 1464.043 _chem_comp.id CDL _chem_comp.mon_nstd_flag . _chem_comp.name CARDIOLIPIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" # _atom_sites.entry_id 5XTC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code DA 30 PLX U 1 101 101 PLX PLX . EA 31 CDL V 1 201 201 CDL CDL . FA 32 PEE V 1 202 202 PEE PEE . GA 30 PLX V 1 203 203 PLX PLX . HA 32 PEE W 1 201 201 PEE PEE . IA 30 PLX b 1 201 201 PLX PLX . JA 30 PLX g 1 201 201 PLX PLX . KA 30 PLX g 1 202 202 PLX PLX . LA 30 PLX g 1 203 203 PLX PLX . MA 31 CDL i 1 401 401 CDL CDL . NA 32 PEE l 1 701 701 PEE PEE . OA 32 PEE l 1 702 702 PEE PEE . PA 31 CDL l 1 703 703 CDL CDL . QA 31 CDL l 1 704 704 CDL CDL . RA 31 CDL n 1 101 101 CDL CDL . SA 33 8Q1 p 1 201 201 8Q1 8Q1 . TA 30 PLX r 1 501 501 PLX PLX . UA 30 PLX r 1 502 502 PLX PLX . VA 30 PLX s 1 401 401 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CDL . . . MA 31 300.492 206.825 255.607 1 37.07 ? C1 CDL 401 i 1 HETATM 2 O O1 CDL . . . MA 31 300.068 206.028 254.508 1 39.14 ? O1 CDL 401 i 1 HETATM 3 C CA2 CDL . . . MA 31 302.031 206.935 255.562 1 37.45 ? CA2 CDL 401 i 1 HETATM 4 O OA2 CDL . . . MA 31 302.462 206.674 254.233 1 36.16 ? OA2 CDL 401 i 1 HETATM 5 P PA1 CDL . . . MA 31 303.784 205.812 254.036 1 34.56 ? PA1 CDL 401 i 1 HETATM 6 O OA3 CDL . . . MA 31 304.274 205.339 255.386 1 31.56 ? OA3 CDL 401 i 1 HETATM 7 O OA4 CDL . . . MA 31 304.847 206.642 253.388 1 38.3 ? OA4 CDL 401 i 1 HETATM 8 O OA5 CDL . . . MA 31 303.474 204.565 253.091 1 37.73 ? OA5 CDL 401 i 1 HETATM 9 C CA3 CDL . . . MA 31 304.1 204.546 251.777 1 41.26 ? CA3 CDL 401 i 1 HETATM 10 C CA4 CDL . . . MA 31 303.016 204.313 250.751 1 45.08 ? CA4 CDL 401 i 1 HETATM 11 O OA6 CDL . . . MA 31 303.407 204.821 249.489 1 44.32 ? OA6 CDL 401 i 1 HETATM 12 C CA5 CDL . . . MA 31 303.525 203.792 248.472 1 42.64 ? CA5 CDL 401 i 1 HETATM 13 O OA7 CDL . . . MA 31 304.294 202.86 248.662 1 44.4 ? OA7 CDL 401 i 1 HETATM 14 C C11 CDL . . . MA 31 302.685 203.877 247.163 1 37.26 ? C11 CDL 401 i 1 HETATM 15 C C12 CDL . . . MA 31 303.196 202.918 246.091 1 32.35 ? C12 CDL 401 i 1 HETATM 16 C C13 CDL . . . MA 31 303.732 203.656 244.856 1 27.77 ? C13 CDL 401 i 1 HETATM 17 C C14 CDL . . . MA 31 302.692 203.666 243.715 1 24.59 ? C14 CDL 401 i 1 HETATM 18 C C15 CDL . . . MA 31 303.173 204.47 242.535 1 24.18 ? C15 CDL 401 i 1 HETATM 19 C C16 CDL . . . MA 31 303.227 203.613 241.235 1 22.69 ? C16 CDL 401 i 1 HETATM 20 C C17 CDL . . . MA 31 304.403 202.637 241.226 1 20.05 ? C17 CDL 401 i 1 HETATM 21 C C18 CDL . . . MA 31 304.206 201.479 240.227 1 18.52 ? C18 CDL 401 i 1 HETATM 22 C CA6 CDL . . . MA 31 301.762 205.073 251.156 1 48.35 ? CA6 CDL 401 i 1 HETATM 23 O OA8 CDL . . . MA 31 301.344 205.795 249.979 1 51.7 ? OA8 CDL 401 i 1 HETATM 24 C CA7 CDL . . . MA 31 300.054 206.417 250.11 1 52.61 ? CA7 CDL 401 i 1 HETATM 25 O OA9 CDL . . . MA 31 299.785 207.038 251.11 1 54.89 ? OA9 CDL 401 i 1 HETATM 26 C C31 CDL . . . MA 31 299.038 206.275 248.985 1 49.84 ? C31 CDL 401 i 1 HETATM 27 C C32 CDL . . . MA 31 299.673 205.743 247.734 1 46.54 ? C32 CDL 401 i 1 HETATM 28 C C33 CDL . . . MA 31 298.775 205.825 246.534 1 45.63 ? C33 CDL 401 i 1 HETATM 29 C C34 CDL . . . MA 31 297.279 205.746 246.902 1 43.93 ? C34 CDL 401 i 1 HETATM 30 C C35 CDL . . . MA 31 296.548 204.7 246.029 1 43.56 ? C35 CDL 401 i 1 HETATM 31 C C36 CDL . . . MA 31 295.024 204.949 245.943 1 42.83 ? C36 CDL 401 i 1 HETATM 32 C C37 CDL . . . MA 31 294.531 204.945 244.485 1 42.27 ? C37 CDL 401 i 1 HETATM 33 C C38 CDL . . . MA 31 295.51 205.706 243.532 1 39.62 ? C38 CDL 401 i 1 HETATM 34 C CB2 CDL . . . MA 31 300.001 206.148 256.885 1 36.23 ? CB2 CDL 401 i 1 HETATM 35 O OB2 CDL . . . MA 31 298.579 206.109 256.85 1 34.79 ? OB2 CDL 401 i 1 HETATM 36 P PB2 CDL . . . MA 31 297.736 206.967 257.945 1 34.16 ? PB2 CDL 401 i 1 HETATM 37 O OB3 CDL . . . MA 31 297.262 206.067 259.041 1 32.64 ? OB3 CDL 401 i 1 HETATM 38 O OB4 CDL . . . MA 31 298.591 208.045 258.547 1 35.07 ? OB4 CDL 401 i 1 HETATM 39 O OB5 CDL . . . MA 31 296.48 207.632 257.219 1 35.81 ? OB5 CDL 401 i 1 HETATM 40 C CB3 CDL . . . MA 31 296.417 207.577 255.799 1 38.26 ? CB3 CDL 401 i 1 HETATM 41 C CB4 CDL . . . MA 31 296.522 208.997 255.271 1 38.95 ? CB4 CDL 401 i 1 HETATM 42 O OB6 CDL . . . MA 31 295.386 209.716 255.654 1 41.3 ? OB6 CDL 401 i 1 HETATM 43 C CB5 CDL . . . MA 31 295.639 210.768 256.584 1 40.86 ? CB5 CDL 401 i 1 HETATM 44 O OB7 CDL . . . MA 31 296.523 210.652 257.421 1 39.95 ? OB7 CDL 401 i 1 HETATM 45 C C51 CDL . . . MA 31 294.793 212.052 256.51 1 40.95 ? C51 CDL 401 i 1 HETATM 46 C C52 CDL . . . MA 31 293.713 211.954 255.413 1 42.25 ? C52 CDL 401 i 1 HETATM 47 C C53 CDL . . . MA 31 293.401 213.296 254.73 1 41.58 ? C53 CDL 401 i 1 HETATM 48 C C54 CDL . . . MA 31 292.457 213.138 253.519 1 39.46 ? C54 CDL 401 i 1 HETATM 49 C C55 CDL . . . MA 31 292.357 214.408 252.638 1 38.28 ? C55 CDL 401 i 1 HETATM 50 C C56 CDL . . . MA 31 291.136 214.381 251.715 1 38.53 ? C56 CDL 401 i 1 HETATM 51 C C57 CDL . . . MA 31 291.237 215.389 250.561 1 38.05 ? C57 CDL 401 i 1 HETATM 52 C C58 CDL . . . MA 31 290.035 215.338 249.635 1 37.45 ? C58 CDL 401 i 1 HETATM 53 C CB6 CDL . . . MA 31 296.623 208.976 253.74 1 37.78 ? CB6 CDL 401 i 1 HETATM 54 O OB8 CDL . . . MA 31 295.755 207.977 253.225 1 37.26 ? OB8 CDL 401 i 1 HETATM 55 C CB7 CDL . . . MA 31 296.445 206.996 252.414 1 39.69 ? CB7 CDL 401 i 1 HETATM 56 O OB9 CDL . . . MA 31 297.545 206.638 252.74 1 40.27 ? OB9 CDL 401 i 1 HETATM 57 C C71 CDL . . . MA 31 295.773 206.411 251.138 1 39.75 ? C71 CDL 401 i 1 HETATM 58 C C72 CDL . . . MA 31 294.638 207.284 250.585 1 40.74 ? C72 CDL 401 i 1 HETATM 59 C C73 CDL . . . MA 31 294.159 206.822 249.182 1 41.8 ? C73 CDL 401 i 1 HETATM 60 C C74 CDL . . . MA 31 292.749 207.309 248.84 1 42.12 ? C74 CDL 401 i 1 HETATM 61 C C75 CDL . . . MA 31 292.135 206.601 247.599 1 42.16 ? C75 CDL 401 i 1 HETATM 62 C C76 CDL . . . MA 31 292.291 207.407 246.294 1 40.15 ? C76 CDL 401 i 1 HETATM 63 C C77 CDL . . . MA 31 291.372 206.917 245.132 1 39.63 ? C77 CDL 401 i 1 HETATM 64 C C78 CDL . . . MA 31 291.458 207.815 243.89 1 38.95 ? C78 CDL 401 i 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 64 #