data_5XTC
#
_model_server_result.job_id            yGTSEjT5P5Zj1HRBvxvUnw 
_model_server_result.datetime_utc      '2024-11-23 07:09:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xtc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"VA","auth_seq_id":401}' 
#
_entry.id    5XTC 
#
_exptl.entry_id    5XTC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XTC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XTC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 GA N N 
? 30 IA N N 
? 30 JA N N 
? 30 KA N N 
? 30 LA N N 
? 30 TA N N 
? 30 UA N N 
? 30 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 K SG CYS 111 c CYS 144 1_555 T SG CYS 279 l CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 L SG CYS 149 d CYS 149 1_555 M SG CYS 88 e CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 AA SG CYS 75 u CYS 78 1_555 AA SG CYS 107 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf7 BA SG CYS 67 v CYS 69 1_555 BA SG CYS 78 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XTC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PLX U 1 101 101 PLX PLX . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 32 PEE V 1 202 202 PEE PEE . 
GA 30 PLX V 1 203 203 PLX PLX . 
HA 32 PEE W 1 201 201 PEE PEE . 
IA 30 PLX b 1 201 201 PLX PLX . 
JA 30 PLX g 1 201 201 PLX PLX . 
KA 30 PLX g 1 202 202 PLX PLX . 
LA 30 PLX g 1 203 203 PLX PLX . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 32 PEE l 1 701 701 PEE PEE . 
OA 32 PEE l 1 702 702 PEE PEE . 
PA 31 CDL l 1 703 703 CDL CDL . 
QA 31 CDL l 1 704 704 CDL CDL . 
RA 31 CDL n 1 101 101 CDL CDL . 
SA 33 8Q1 p 1 201 201 8Q1 8Q1 . 
TA 30 PLX r 1 501 501 PLX PLX . 
UA 30 PLX r 1 502 502 PLX PLX . 
VA 30 PLX s 1 401 401 PLX PLX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . VA 30 246.844 150.587 242.138 1 40.69 ? C23 PLX 401 s 1 
HETATM 2 C C22 PLX . . . VA 30 247.31 150.652 243.603 1 41.04 ? C22 PLX 401 s 1 
HETATM 3 C C21 PLX . . . VA 30 246.521 151.697 244.425 1 40.14 ? C21 PLX 401 s 1 
HETATM 4 C C20 PLX . . . VA 30 246.25 151.237 245.883 1 40.19 ? C20 PLX 401 s 1 
HETATM 5 C C19 PLX . . . VA 30 245.195 152.116 246.598 1 37.39 ? C19 PLX 401 s 1 
HETATM 6 C C18 PLX . . . VA 30 244.677 151.461 247.899 1 33.56 ? C18 PLX 401 s 1 
HETATM 7 C C17 PLX . . . VA 30 243.768 152.41 248.695 1 31.18 ? C17 PLX 401 s 1 
HETATM 8 C C16 PLX . . . VA 30 244.539 153.625 249.245 1 31.66 ? C16 PLX 401 s 1 
HETATM 9 C C15 PLX . . . VA 30 244.142 153.926 250.7 1 33.01 ? C15 PLX 401 s 1 
HETATM 10 C C14 PLX . . . VA 30 242.829 154.716 250.811 1 32.58 ? C14 PLX 401 s 1 
HETATM 11 C C13 PLX . . . VA 30 242.543 155.066 252.281 1 31.76 ? C13 PLX 401 s 1 
HETATM 12 C C12 PLX . . . VA 30 242.25 156.559 252.485 1 32.14 ? C12 PLX 401 s 1 
HETATM 13 C C11 PLX . . . VA 30 242.797 157.037 253.841 1 32.89 ? C11 PLX 401 s 1 
HETATM 14 C C10 PLX . . . VA 30 242.066 158.295 254.331 1 33.8 ? C10 PLX 401 s 1 
HETATM 15 C C9 PLX . . . VA 30 241.43 158.054 255.709 1 35.24 ? C9 PLX 401 s 1 
HETATM 16 C C8 PLX . . . VA 30 242.414 157.317 256.639 1 36.45 ? C8 PLX 401 s 1 
HETATM 17 C C7 PLX . . . VA 30 243.428 158.283 257.284 1 37.52 ? C7 PLX 401 s 1 
HETATM 18 C C6 PLX . . . VA 30 243.527 158.056 258.794 1 36.56 ? C6 PLX 401 s 1 
HETATM 19 O O7 PLX . . . VA 30 244.797 157.588 259.126 1 37.4 ? O7 PLX 401 s 1 
HETATM 20 O O6 PLX . . . VA 30 243.273 159.257 259.491 1 33.47 ? O6 PLX 401 s 1 
HETATM 21 C C4 PLX . . . VA 30 242.867 159.037 260.815 1 30.66 ? C4 PLX 401 s 1 
HETATM 22 C C3 PLX . . . VA 30 243.571 160.022 261.726 1 27.81 ? C3 PLX 401 s 1 
HETATM 23 O O4 PLX . . . VA 30 244.929 159.608 261.842 1 22.36 ? O4 PLX 401 s 1 
HETATM 24 P P1 PLX . . . VA 30 245.433 159.179 263.287 1 19.23 ? P1 PLX 401 s 1 
HETATM 25 O O1 PLX . . . VA 30 244.812 157.75 263.655 1 14.54 ? O1 PLX 401 s 1 
HETATM 26 C C2 PLX . . . VA 30 245.522 156.917 264.585 1 9.09 ? C2 PLX 401 s 1 
HETATM 27 C C1 PLX . . . VA 30 244.494 156.086 265.412 1 2.37 ? C1 PLX 401 s 1 
HETATM 28 N N1 PLX . . . VA 30 244.868 155.991 266.846 1 2.22 ? N1 PLX 401 s 1 
HETATM 29 C C1C PLX . . . VA 30 246.073 155.262 267.23 1 2 ? C1C PLX 401 s 1 
HETATM 30 C C1B PLX . . . VA 30 244.998 157.344 267.36 1 2.26 ? C1B PLX 401 s 1 
HETATM 31 C C1A PLX . . . VA 30 243.767 155.325 267.511 1 2 ? C1A PLX 401 s 1 
HETATM 32 O O2 PLX . . . VA 30 244.965 160.218 264.279 1 19.56 ? O2 PLX 401 s 1 
HETATM 33 C C5 PLX . . . VA 30 241.37 159.276 260.906 1 33.4 ? C5 PLX 401 s 1 
HETATM 34 O O8 PLX . . . VA 30 240.687 158.421 259.974 1 37.15 ? O8 PLX 401 s 1 
HETATM 35 C C24 PLX . . . VA 30 240.093 159.152 258.93 1 38.76 ? C24 PLX 401 s 1 
HETATM 36 O O9 PLX . . . VA 30 241.061 160.008 258.412 1 38.8 ? O9 PLX 401 s 1 
HETATM 37 C C25 PLX . . . VA 30 238.959 160.006 259.487 1 38.96 ? C25 PLX 401 s 1 
HETATM 38 C C26 PLX . . . VA 30 237.746 159.171 259.925 1 38.45 ? C26 PLX 401 s 1 
HETATM 39 C C27 PLX . . . VA 30 236.465 160.031 260.01 1 37.88 ? C27 PLX 401 s 1 
HETATM 40 C C28 PLX . . . VA 30 235.305 159.271 260.683 1 37.56 ? C28 PLX 401 s 1 
HETATM 41 C C29 PLX . . . VA 30 234.928 158.024 259.874 1 40.01 ? C29 PLX 401 s 1 
HETATM 42 C C30 PLX . . . VA 30 233.524 158.116 259.266 1 42.17 ? C30 PLX 401 s 1 
HETATM 43 C C31 PLX . . . VA 30 232.646 156.977 259.781 1 43.78 ? C31 PLX 401 s 1 
HETATM 44 C C32 PLX . . . VA 30 231.836 156.317 258.659 1 45.48 ? C32 PLX 401 s 1 
HETATM 45 C C33 PLX . . . VA 30 232.691 156.028 257.421 1 46.77 ? C33 PLX 401 s 1 
HETATM 46 C C34 PLX . . . VA 30 231.881 155.339 256.305 1 48 ? C34 PLX 401 s 1 
HETATM 47 C C35 PLX . . . VA 30 232.351 155.772 254.919 1 46.66 ? C35 PLX 401 s 1 
HETATM 48 C C36 PLX . . . VA 30 231.645 154.987 253.804 1 44.97 ? C36 PLX 401 s 1 
HETATM 49 C C37 PLX . . . VA 30 231.657 155.726 252.461 1 42.83 ? C37 PLX 401 s 1 
HETATM 50 C C38 PLX . . . VA 30 230.874 154.987 251.371 1 40.79 ? C38 PLX 401 s 1 
HETATM 51 C C39 PLX . . . VA 30 230.504 155.898 250.196 1 38.57 ? C39 PLX 401 s 1 
HETATM 52 O O3 PLX . . . VA 30 246.941 159.116 263.303 1 15.39 ? O3 PLX 401 s 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    83 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           52 
#