data_5XTC
#
_model_server_result.job_id            d6XrJJHBvFIekkWq2xNLiQ 
_model_server_result.datetime_utc      '2024-11-14 06:44:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xtc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TA","auth_seq_id":501}' 
#
_entry.id    5XTC 
#
_exptl.entry_id    5XTC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          30 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XTC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XTC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 30 DA N N 
? 30 GA N N 
? 30 IA N N 
? 30 JA N N 
? 30 KA N N 
? 30 LA N N 
? 30 TA N N 
? 30 UA N N 
? 30 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 K SG CYS 111 c CYS 144 1_555 T SG CYS 279 l CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 L SG CYS 149 d CYS 149 1_555 M SG CYS 88 e CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 AA SG CYS 75 u CYS 78 1_555 AA SG CYS 107 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf7 BA SG CYS 67 v CYS 69 1_555 BA SG CYS 78 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5XTC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PLX U 1 101 101 PLX PLX . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 32 PEE V 1 202 202 PEE PEE . 
GA 30 PLX V 1 203 203 PLX PLX . 
HA 32 PEE W 1 201 201 PEE PEE . 
IA 30 PLX b 1 201 201 PLX PLX . 
JA 30 PLX g 1 201 201 PLX PLX . 
KA 30 PLX g 1 202 202 PLX PLX . 
LA 30 PLX g 1 203 203 PLX PLX . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 32 PEE l 1 701 701 PEE PEE . 
OA 32 PEE l 1 702 702 PEE PEE . 
PA 31 CDL l 1 703 703 CDL CDL . 
QA 31 CDL l 1 704 704 CDL CDL . 
RA 31 CDL n 1 101 101 CDL CDL . 
SA 33 8Q1 p 1 201 201 8Q1 8Q1 . 
TA 30 PLX r 1 501 501 PLX PLX . 
UA 30 PLX r 1 502 502 PLX PLX . 
VA 30 PLX s 1 401 401 PLX PLX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . TA 30 270.758 238.031 239.071 1 40.69 ? C23 PLX 501 r 1 
HETATM 2 C C22 PLX . . . TA 30 270.86 239.554 238.895 1 41.04 ? C22 PLX 501 r 1 
HETATM 3 C C21 PLX . . . TA 30 271.966 239.959 237.894 1 40.14 ? C21 PLX 501 r 1 
HETATM 4 C C20 PLX . . . TA 30 271.788 241.407 237.36 1 40.19 ? C20 PLX 501 r 1 
HETATM 5 C C19 PLX . . . TA 30 272.232 241.545 235.884 1 37.39 ? C19 PLX 501 r 1 
HETATM 6 C C18 PLX . . . TA 30 271.712 240.379 235.012 1 33.56 ? C18 PLX 501 r 1 
HETATM 7 C C17 PLX . . . TA 30 272.444 240.259 233.67 1 31.18 ? C17 PLX 501 r 1 
HETATM 8 C C16 PLX . . . TA 30 271.969 239.031 232.87 1 31.66 ? C16 PLX 501 r 1 
HETATM 9 C C15 PLX . . . TA 30 270.718 239.331 232.026 1 33.01 ? C15 PLX 501 r 1 
HETATM 10 C C14 PLX . . . TA 30 270.578 238.388 230.818 1 32.58 ? C14 PLX 501 r 1 
HETATM 11 C C13 PLX . . . TA 30 270.641 239.16 229.488 1 31.76 ? C13 PLX 501 r 1 
HETATM 12 C C12 PLX . . . TA 30 271.56 240.392 229.583 1 32.14 ? C12 PLX 501 r 1 
HETATM 13 C C11 PLX . . . TA 30 271.853 241.01 228.205 1 32.89 ? C11 PLX 501 r 1 
HETATM 14 C C10 PLX . . . TA 30 271.65 240.015 227.047 1 33.8 ? C10 PLX 501 r 1 
HETATM 15 C C9 PLX . . . TA 30 270.882 240.674 225.888 1 35.24 ? C9 PLX 501 r 1 
HETATM 16 C C8 PLX . . . TA 30 271.831 241.471 224.968 1 36.45 ? C8 PLX 501 r 1 
HETATM 17 C C7 PLX . . . TA 30 271.821 242.99 225.232 1 37.52 ? C7 PLX 501 r 1 
HETATM 18 C C6 PLX . . . TA 30 272.881 243.71 224.392 1 36.56 ? C6 PLX 501 r 1 
HETATM 19 O O7 PLX . . . TA 30 272.911 243.144 223.118 1 37.4 ? O7 PLX 501 r 1 
HETATM 20 O O6 PLX . . . TA 30 272.568 245.082 224.272 1 33.47 ? O6 PLX 501 r 1 
HETATM 21 C C4 PLX . . . TA 30 273.505 245.826 223.526 1 30.66 ? C4 PLX 501 r 1 
HETATM 22 C C3 PLX . . . TA 30 272.902 246.229 222.198 1 27.81 ? C3 PLX 501 r 1 
HETATM 23 O O4 PLX . . . TA 30 272.377 245.053 221.596 1 22.36 ? O4 PLX 501 r 1 
HETATM 24 P P1 PLX . . . TA 30 270.795 244.876 221.609 1 19.23 ? P1 PLX 501 r 1 
HETATM 25 O O1 PLX . . . TA 30 270.294 244.686 220.109 1 14.54 ? O1 PLX 501 r 1 
HETATM 26 C C2 PLX . . . TA 30 270.791 243.538 219.424 1 9.09 ? C2 PLX 501 r 1 
HETATM 27 C C1 PLX . . . TA 30 269.691 242.446 219.43 1 2.37 ? C1 PLX 501 r 1 
HETATM 28 N N1 PLX . . . TA 30 268.776 242.652 218.296 1 2.22 ? N1 PLX 501 r 1 
HETATM 29 C C1C PLX . . . TA 30 267.851 243.778 218.348 1 2 ? C1C PLX 501 r 1 
HETATM 30 C C1B PLX . . . TA 30 269.586 242.809 217.107 1 2.26 ? C1B PLX 501 r 1 
HETATM 31 C C1A PLX . . . TA 30 267.984 241.45 218.17 1 2 ? C1A PLX 501 r 1 
HETATM 32 O O2 PLX . . . TA 30 270.452 243.636 222.395 1 19.56 ? O2 PLX 501 r 1 
HETATM 33 C C5 PLX . . . TA 30 273.869 247.101 224.273 1 33.4 ? C5 PLX 501 r 1 
HETATM 34 O O8 PLX . . . TA 30 275.094 246.857 224.99 1 37.15 ? O8 PLX 501 r 1 
HETATM 35 C C24 PLX . . . TA 30 275.124 247.434 226.272 1 38.76 ? C24 PLX 501 r 1 
HETATM 36 O O9 PLX . . . TA 30 276.277 248.205 226.382 1 38.8 ? O9 PLX 501 r 1 
HETATM 37 C C25 PLX . . . TA 30 275.167 246.327 227.318 1 38.96 ? C25 PLX 501 r 1 
HETATM 38 C C26 PLX . . . TA 30 275.268 244.931 226.679 1 38.45 ? C26 PLX 501 r 1 
HETATM 39 C C27 PLX . . . TA 30 274.94 243.785 227.658 1 37.88 ? C27 PLX 501 r 1 
HETATM 40 C C28 PLX . . . TA 30 273.667 244.063 228.481 1 37.56 ? C28 PLX 501 r 1 
HETATM 41 C C29 PLX . . . TA 30 273.903 243.789 229.973 1 40.01 ? C29 PLX 501 r 1 
HETATM 42 C C30 PLX . . . TA 30 274.843 242.591 230.175 1 42.17 ? C30 PLX 501 r 1 
HETATM 43 C C31 PLX . . . TA 30 275.789 242.765 231.367 1 43.78 ? C31 PLX 501 r 1 
HETATM 44 C C32 PLX . . . TA 30 275.071 242.55 232.703 1 45.48 ? C32 PLX 501 r 1 
HETATM 45 C C33 PLX . . . TA 30 276.005 241.913 233.734 1 46.77 ? C33 PLX 501 r 1 
HETATM 46 C C34 PLX . . . TA 30 277.36 242.638 233.79 1 48 ? C34 PLX 501 r 1 
HETATM 47 C C35 PLX . . . TA 30 278.208 242.23 234.996 1 46.66 ? C35 PLX 501 r 1 
HETATM 48 C C36 PLX . . . TA 30 277.47 242.427 236.326 1 44.97 ? C36 PLX 501 r 1 
HETATM 49 C C37 PLX . . . TA 30 278.115 241.612 237.448 1 42.83 ? C37 PLX 501 r 1 
HETATM 50 C C38 PLX . . . TA 30 278.37 242.45 238.703 1 40.79 ? C38 PLX 501 r 1 
HETATM 51 C C39 PLX . . . TA 30 277.075 242.871 239.4 1 38.57 ? C39 PLX 501 r 1 
HETATM 52 O O3 PLX . . . TA 30 270.153 246.092 222.238 1 15.39 ? O3 PLX 501 r 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    72 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           52 
#