data_5XTC
#
_model_server_result.job_id            VRPZqlYqM1i0YjgCw3DQ4g 
_model_server_result.datetime_utc      '2024-11-14 06:49:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5xtc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"QA","auth_seq_id":704}' 
#
_entry.id    5XTC 
#
_exptl.entry_id    5XTC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          31 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5XTC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5XTC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 31 EA N N 
? 31 MA N N 
? 31 PA N N 
? 31 QA N N 
? 31 RA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 94 V CYS 95 1_555 D SG CYS 114 V CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 K SG CYS 111 c CYS 144 1_555 T SG CYS 279 l CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 L SG CYS 149 d CYS 149 1_555 M SG CYS 88 e CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 P SG CYS 32 h CYS 33 1_555 P SG CYS 65 h CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf5 P SG CYS 42 h CYS 43 1_555 P SG CYS 55 h CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 AA SG CYS 75 u CYS 78 1_555 AA SG CYS 107 u CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf7 BA SG CYS 67 v CYS 69 1_555 BA SG CYS 78 v CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     5XTC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 30 PLX U 1 101 101 PLX PLX . 
EA 31 CDL V 1 201 201 CDL CDL . 
FA 32 PEE V 1 202 202 PEE PEE . 
GA 30 PLX V 1 203 203 PLX PLX . 
HA 32 PEE W 1 201 201 PEE PEE . 
IA 30 PLX b 1 201 201 PLX PLX . 
JA 30 PLX g 1 201 201 PLX PLX . 
KA 30 PLX g 1 202 202 PLX PLX . 
LA 30 PLX g 1 203 203 PLX PLX . 
MA 31 CDL i 1 401 401 CDL CDL . 
NA 32 PEE l 1 701 701 PEE PEE . 
OA 32 PEE l 1 702 702 PEE PEE . 
PA 31 CDL l 1 703 703 CDL CDL . 
QA 31 CDL l 1 704 704 CDL CDL . 
RA 31 CDL n 1 101 101 CDL CDL . 
SA 33 8Q1 p 1 201 201 8Q1 8Q1 . 
TA 30 PLX r 1 501 501 PLX PLX . 
UA 30 PLX r 1 502 502 PLX PLX . 
VA 30 PLX s 1 401 401 PLX PLX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . QA 31 291.752 271.859 221.38 1 26.43 ? C1 CDL 704 l 1 
HETATM 2 O O1 CDL . . . QA 31 292.273 271.627 222.683 1 26.57 ? O1 CDL 704 l 1 
HETATM 3 C CA2 CDL . . . QA 31 292.227 270.691 220.49 1 30.23 ? CA2 CDL 704 l 1 
HETATM 4 O OA2 CDL . . . QA 31 292.382 269.562 221.345 1 36.05 ? OA2 CDL 704 l 1 
HETATM 5 P PA1 CDL . . . QA 31 292.331 268.087 220.738 1 41.48 ? PA1 CDL 704 l 1 
HETATM 6 O OA3 CDL . . . QA 31 292.164 268.162 219.238 1 43.86 ? OA3 CDL 704 l 1 
HETATM 7 O OA4 CDL . . . QA 31 293.611 267.378 221.054 1 41.35 ? OA4 CDL 704 l 1 
HETATM 8 O OA5 CDL . . . QA 31 291.114 267.256 221.345 1 41.39 ? OA5 CDL 704 l 1 
HETATM 9 C CA3 CDL . . . QA 31 291.383 265.934 221.893 1 40.68 ? CA3 CDL 704 l 1 
HETATM 10 C CA4 CDL . . . QA 31 291.473 266.053 223.403 1 41.61 ? CA4 CDL 704 l 1 
HETATM 11 O OA6 CDL . . . QA 31 290.893 264.889 223.98 1 41.23 ? OA6 CDL 704 l 1 
HETATM 12 C CA5 CDL . . . QA 31 290.74 264.905 225.427 1 43.07 ? CA5 CDL 704 l 1 
HETATM 13 O OA7 CDL . . . QA 31 289.682 265.267 225.93 1 44.55 ? OA7 CDL 704 l 1 
HETATM 14 C C11 CDL . . . QA 31 291.903 264.437 226.345 1 43.5 ? C11 CDL 704 l 1 
HETATM 15 C C12 CDL . . . QA 31 291.416 264.262 227.783 1 46.08 ? C12 CDL 704 l 1 
HETATM 16 C C13 CDL . . . QA 31 292.329 263.349 228.617 1 47.48 ? C13 CDL 704 l 1 
HETATM 17 C C14 CDL . . . QA 31 291.955 263.4 230.115 1 48.82 ? C14 CDL 704 l 1 
HETATM 18 C C15 CDL . . . QA 31 293.16 263.23 231 1 50.4 ? C15 CDL 704 l 1 
HETATM 19 C C16 CDL . . . QA 31 293.178 264.226 232.197 1 51.05 ? C16 CDL 704 l 1 
HETATM 20 C C17 CDL . . . QA 31 294.554 264.26 232.859 1 50.9 ? C17 CDL 704 l 1 
HETATM 21 C C18 CDL . . . QA 31 294.466 264.411 234.386 1 49.98 ? C18 CDL 704 l 1 
HETATM 22 C CA6 CDL . . . QA 31 290.742 267.317 223.875 1 42.59 ? CA6 CDL 704 l 1 
HETATM 23 O OA8 CDL . . . QA 31 291.683 268.425 223.915 1 45.3 ? OA8 CDL 704 l 1 
HETATM 24 C CA7 CDL . . . QA 31 291.278 269.571 224.705 1 44.46 ? CA7 CDL 704 l 1 
HETATM 25 O OA9 CDL . . . QA 31 291.011 270.618 224.166 1 46.67 ? OA9 CDL 704 l 1 
HETATM 26 C C31 CDL . . . QA 31 291.185 269.469 226.223 1 43.53 ? C31 CDL 704 l 1 
HETATM 27 C C32 CDL . . . QA 31 292.482 269.785 226.908 1 42.85 ? C32 CDL 704 l 1 
HETATM 28 C C33 CDL . . . QA 31 293.154 268.568 227.473 1 43.71 ? C33 CDL 704 l 1 
HETATM 29 C C34 CDL . . . QA 31 293.134 268.566 229.015 1 45.58 ? C34 CDL 704 l 1 
HETATM 30 C C35 CDL . . . QA 31 294.561 268.517 229.598 1 46.68 ? C35 CDL 704 l 1 
HETATM 31 C C36 CDL . . . QA 31 294.572 268.305 231.131 1 47.42 ? C36 CDL 704 l 1 
HETATM 32 C C37 CDL . . . QA 31 293.93 269.462 231.916 1 47.04 ? C37 CDL 704 l 1 
HETATM 33 C C38 CDL . . . QA 31 294.58 269.605 233.33 1 47.39 ? C38 CDL 704 l 1 
HETATM 34 C CB2 CDL . . . QA 31 292.219 273.245 220.927 1 22.53 ? CB2 CDL 704 l 1 
HETATM 35 O OB2 CDL . . . QA 31 291.88 274.193 221.939 1 15.55 ? OB2 CDL 704 l 1 
HETATM 36 P PB2 CDL . . . QA 31 290.774 275.335 221.606 1 11.56 ? PB2 CDL 704 l 1 
HETATM 37 O OB3 CDL . . . QA 31 291.375 276.374 220.718 1 11.22 ? OB3 CDL 704 l 1 
HETATM 38 O OB4 CDL . . . QA 31 289.608 274.709 220.894 1 13.22 ? OB4 CDL 704 l 1 
HETATM 39 O OB5 CDL . . . QA 31 290.262 276.018 222.957 1 16.06 ? OB5 CDL 704 l 1 
HETATM 40 C CB3 CDL . . . QA 31 291.207 276.56 223.877 1 26.24 ? CB3 CDL 704 l 1 
HETATM 41 C CB4 CDL . . . QA 31 290.764 277.961 224.289 1 32.14 ? CB4 CDL 704 l 1 
HETATM 42 O OB6 CDL . . . QA 31 291.461 278.902 223.517 1 35.51 ? OB6 CDL 704 l 1 
HETATM 43 C CB5 CDL . . . QA 31 290.841 280.184 223.368 1 37.72 ? CB5 CDL 704 l 1 
HETATM 44 O OB7 CDL . . . QA 31 289.676 280.267 223.009 1 39.71 ? OB7 CDL 704 l 1 
HETATM 45 C C51 CDL . . . QA 31 291.65 281.469 223.648 1 38.15 ? C51 CDL 704 l 1 
HETATM 46 C C52 CDL . . . QA 31 291.19 282.238 224.908 1 37.84 ? C52 CDL 704 l 1 
HETATM 47 C C53 CDL . . . QA 31 292.357 282.769 225.754 1 35.62 ? C53 CDL 704 l 1 
HETATM 48 C C54 CDL . . . QA 31 292.521 281.981 227.069 1 35.36 ? C54 CDL 704 l 1 
HETATM 49 C C55 CDL . . . QA 31 293.401 282.713 228.113 1 33.36 ? C55 CDL 704 l 1 
HETATM 50 C C56 CDL . . . QA 31 293.502 281.935 229.426 1 32.5 ? C56 CDL 704 l 1 
HETATM 51 C C57 CDL . . . QA 31 294.428 282.603 230.452 1 32.16 ? C57 CDL 704 l 1 
HETATM 52 C C58 CDL . . . QA 31 294.445 281.842 231.765 1 31.26 ? C58 CDL 704 l 1 
HETATM 53 C CB6 CDL . . . QA 31 291.067 278.192 225.779 1 35.7 ? CB6 CDL 704 l 1 
HETATM 54 O OB8 CDL . . . QA 31 290.249 277.341 226.58 1 41.59 ? OB8 CDL 704 l 1 
HETATM 55 C CB7 CDL . . . QA 31 290.708 277.153 227.949 1 44.06 ? CB7 CDL 704 l 1 
HETATM 56 O OB9 CDL . . . QA 31 290.186 277.76 228.848 1 46.92 ? OB9 CDL 704 l 1 
HETATM 57 C C71 CDL . . . QA 31 291.87 276.16 228.259 1 45.64 ? C71 CDL 704 l 1 
HETATM 58 C C72 CDL . . . QA 31 292.337 276.225 229.721 1 45.76 ? C72 CDL 704 l 1 
HETATM 59 C C73 CDL . . . QA 31 292.762 274.839 230.273 1 44.26 ? C73 CDL 704 l 1 
HETATM 60 C C74 CDL . . . QA 31 293.27 274.905 231.712 1 45.79 ? C74 CDL 704 l 1 
HETATM 61 C C75 CDL . . . QA 31 294.024 273.612 232.124 1 44.04 ? C75 CDL 704 l 1 
HETATM 62 C C76 CDL . . . QA 31 295.202 273.893 233.078 1 43.09 ? C76 CDL 704 l 1 
HETATM 63 C C77 CDL . . . QA 31 296.307 272.785 233.042 1 42.24 ? C77 CDL 704 l 1 
HETATM 64 C C78 CDL . . . QA 31 297.557 273.114 233.874 1 40.34 ? C78 CDL 704 l 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           236 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           64 
#